MELO3C008859.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C008859.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr08 : 25251401 .. 25252051 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAGTAAAAGCAAATAAGGGAATGAGAAAGAGCCTCACAAGAAAACCAAATTTCAAATGAAGCAAGTAACTATCCCAATCAAGGGCATGTATCAAAAGAATGAACCACCAATAAAAAGACTCTCGGTTGCTGAATTTTGTGCTAGGCTAGACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA

mRNA sequence

ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA

Coding sequence (CDS)

ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA

Protein sequence

MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDIGNKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Homology
[Close]
BLAST of MELO3C008859.2 vs. NCBI nr
Match: XP_016900785.1 (PREDICTED: uncharacterized protein LOC107991020 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 6.8e-40
Identity = 115/214 (53.74%), Postives = 127/214 (59.35%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 43  MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 102

Query: 61  SREDI------GN-------------------------------------------KGLC 120
           S E        GN                                           KGL 
Sbjct: 103 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 162

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEG--FELKTIM 164
           FRCNEKYSH H+CKVKEKRELMLF+LNE       N  E+V LK L++AEG   ELK IM
Sbjct: 163 FRCNEKYSHGHRCKVKEKRELMLFILNEXXXXXXXNREELVRLKQLELAEGAKIELKIIM 222

[Close]
BLAST of MELO3C008859.2 vs. NCBI nr
Match: XP_008456244.1 (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 9.5e-34
Identity = 96/207 (46.38%), Postives = 115/207 (55.56%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAF+T LEP LQAEV++RHPQTLEECM EA LVND NLALKL+R ELG+ + K
Sbjct: 194 MAESVLRDAFLTGLEPTLQAEVVSRHPQTLEECMMEALLVNDCNLALKLSRAELGIHKYK 253

Query: 61  SREDIGNK-------------------------------------------------GLC 120
             E    K                                                 GLC
Sbjct: 254 GGEPANTKAPVSNEKGNPRKNEFQMKQITIPLKGSYQKGDPLVKRLSDAEFRSRLERGLC 313

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGE-----IVELKHLDIAEG--FE 152
           FRCNEKYSH H CKVKEKRELMLF+LNEEE   +  + E     I+ELK LD  E    E
Sbjct: 314 FRCNEKYSHGHHCKVKEKRELMLFILNEEESADEGENSETQREKIMELKQLDTLEEAVIE 373

[Close]
BLAST of MELO3C008859.2 vs. NCBI nr
Match: XP_008447685.1 (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 1.1e-32
Identity = 92/207 (44.44%), Postives = 116/207 (56.04%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           M ESVLRD F+T LEP LQ EV++ HPQTLEECM  AQLVND NLALKLA+ E+G++EPK
Sbjct: 194 MVESVLRDTFLTGLEPTLQVEVMSCHPQTLEECMMAAQLVNDRNLALKLAQAEMGIMEPK 253

Query: 61  SRE----------DIG---------------------------------------NKGLC 120
             E          D G                                       +KGLC
Sbjct: 254 RSEATNTKVPWNNDKGSMRKNEFQMKQITIPLKRSYHKGEPPVKRLSDAEFRARLDKGLC 313

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGT-----SKENSGEIVELKHLDIAEG--FE 152
           FRCNEKYSH+H CK+KEKR+LMLF+LNEEE T     S     E +E+  L++ E    E
Sbjct: 314 FRCNEKYSHEHHCKIKEKRDLMLFILNEEESTEEGEGSDTQKTEPLEINQLEVLEEAVIE 373

[Close]
BLAST of MELO3C008859.2 vs. NCBI nr
Match: XP_011654353.1 (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 3.2e-29
Identity = 87/207 (42.03%), Postives = 115/207 (55.56%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           M ESVLRDAF+T LEP LQAEV++ +P TLEECM+EAQLVND NLAL+ ++ E G L  K
Sbjct: 194 MTESVLRDAFLTGLEPNLQAEVVSHNPLTLEECMREAQLVNDRNLALQWSKAEGGGLNYK 253

Query: 61  SREDIGN-------------------------------------------------KGLC 120
             E   N                                                 KGLC
Sbjct: 254 KGEGSTNKGPEGGEKGITRKTEFPLKQVTIPIKGNYQKSEPPVKRLLDVEFKARLDKGLC 313

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEG-----TSKENSGEIVELKHLDIAEG--FE 152
           F+CNE+YS  H+CK+K+KRELMLF++NEEE       ++E + E++EL  L + EG   E
Sbjct: 314 FKCNERYSPGHRCKMKDKRELMLFIMNEEESLEDEDRTEETNEEVLELNQLTLEEGTEIE 373

[Close]
BLAST of MELO3C008859.2 vs. NCBI nr
Match: XP_008448087.1 (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 90/207 (43.48%), Postives = 111/207 (53.62%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLE-- 60
           MA SVL DAFVT LEP+LQAEVI+RHPQTLE+CM+EAQLVND NLALKL++ ELG+ E  
Sbjct: 137 MAGSVLVDAFVTGLEPSLQAEVISRHPQTLEDCMREAQLVNDRNLALKLSKMELGMTEWE 196

Query: 61  ----------------PKSREDI----------GN---------------------KGLC 120
                           P  + D           GN                     +GLC
Sbjct: 197 EGGSSKVKKLGDVDKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLC 256

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGE-----IVELKHLDIAE--GFE 152
           FRCN+KYS  H+CK KEKRELM              S E      VELK L++ E    E
Sbjct: 257 FRCNDKYSPGHRCKTKEKRELMXXXXXXXXXXXXXXSHEEVTEGTVELKTLELTEDVAIE 316

[Close]
BLAST of MELO3C008859.2 vs. TrEMBL
Match: tr|A0A1S4DYI9|A0A1S4DYI9_CUCME (uncharacterized protein LOC107991020 OS=Cucumis melo OX=3656 GN=LOC107991020 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.5e-40
Identity = 115/214 (53.74%), Postives = 127/214 (59.35%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 43  MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 102

Query: 61  SREDI------GN-------------------------------------------KGLC 120
           S E        GN                                           KGL 
Sbjct: 103 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 162

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEG--FELKTIM 164
           FRCNEKYSH H+CKVKEKRELMLF+LNE       N  E+V LK L++AEG   ELK IM
Sbjct: 163 FRCNEKYSHGHRCKVKEKRELMLFILNEXXXXXXXNREELVRLKQLELAEGAKIELKIIM 222

[Close]
BLAST of MELO3C008859.2 vs. TrEMBL
Match: tr|A0A1S3C415|A0A1S3C415_CUCME (uncharacterized protein LOC103496243 OS=Cucumis melo OX=3656 GN=LOC103496243 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.3e-34
Identity = 96/207 (46.38%), Postives = 115/207 (55.56%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAF+T LEP LQAEV++RHPQTLEECM EA LVND NLALKL+R ELG+ + K
Sbjct: 194 MAESVLRDAFLTGLEPTLQAEVVSRHPQTLEECMMEALLVNDCNLALKLSRAELGIHKYK 253

Query: 61  SREDIGNK-------------------------------------------------GLC 120
             E    K                                                 GLC
Sbjct: 254 GGEPANTKAPVSNEKGNPRKNEFQMKQITIPLKGSYQKGDPLVKRLSDAEFRSRLERGLC 313

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGE-----IVELKHLDIAEG--FE 152
           FRCNEKYSH H CKVKEKRELMLF+LNEEE   +  + E     I+ELK LD  E    E
Sbjct: 314 FRCNEKYSHGHHCKVKEKRELMLFILNEEESADEGENSETQREKIMELKQLDTLEEAVIE 373

[Close]
BLAST of MELO3C008859.2 vs. TrEMBL
Match: tr|A0A1S3BIL2|A0A1S3BIL2_CUCME (uncharacterized protein LOC103490096 OS=Cucumis melo OX=3656 GN=LOC103490096 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.0e-33
Identity = 92/207 (44.44%), Postives = 116/207 (56.04%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           M ESVLRD F+T LEP LQ EV++ HPQTLEECM  AQLVND NLALKLA+ E+G++EPK
Sbjct: 194 MVESVLRDTFLTGLEPTLQVEVMSCHPQTLEECMMAAQLVNDRNLALKLAQAEMGIMEPK 253

Query: 61  SRE----------DIG---------------------------------------NKGLC 120
             E          D G                                       +KGLC
Sbjct: 254 RSEATNTKVPWNNDKGSMRKNEFQMKQITIPLKRSYHKGEPPVKRLSDAEFRARLDKGLC 313

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGT-----SKENSGEIVELKHLDIAEG--FE 152
           FRCNEKYSH+H CK+KEKR+LMLF+LNEEE T     S     E +E+  L++ E    E
Sbjct: 314 FRCNEKYSHEHHCKIKEKRDLMLFILNEEESTEEGEGSDTQKTEPLEINQLEVLEEAVIE 373

[Close]
BLAST of MELO3C008859.2 vs. TrEMBL
Match: tr|A0A1S3BJT6|A0A1S3BJT6_CUCME (uncharacterized protein LOC103490375 OS=Cucumis melo OX=3656 GN=LOC103490375 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.8e-28
Identity = 90/207 (43.48%), Postives = 111/207 (53.62%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLE-- 60
           MA SVL DAFVT LEP+LQAEVI+RHPQTLE+CM+EAQLVND NLALKL++ ELG+ E  
Sbjct: 137 MAGSVLVDAFVTGLEPSLQAEVISRHPQTLEDCMREAQLVNDRNLALKLSKMELGMTEWE 196

Query: 61  ----------------PKSREDI----------GN---------------------KGLC 120
                           P  + D           GN                     +GLC
Sbjct: 197 EGGSSKVKKLGDVDKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLC 256

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGE-----IVELKHLDIAE--GFE 152
           FRCN+KYS  H+CK KEKRELM              S E      VELK L++ E    E
Sbjct: 257 FRCNDKYSPGHRCKTKEKRELMXXXXXXXXXXXXXXSHEEVTEGTVELKTLELTEDVAIE 316

[Close]
BLAST of MELO3C008859.2 vs. TrEMBL
Match: tr|E5GCI2|E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.3e-18
Identity = 61/125 (48.80%), Postives = 71/125 (56.80%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEEC----------MKEAQLVNDPNLALKLA 60
           MAESVL DAFVT LE  LQAEV +RHP TLEEC          MK+  L    N   K  
Sbjct: 166 MAESVLIDAFVTGLETNLQAEVKSRHPVTLEECSGKPKWADFAMKQLTLPIKGNFVKKEP 225

Query: 61  REELGLLEPKSREDIGNKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEE--GTSKENS 114
           +  +  L         +KGLCFRCN+KYS  H+CK K  RELM F+ NE+E  GT KE  
Sbjct: 226 QPPVKRLSDSEFRARLDKGLCFRCNDKYSPGHRCKAKTNRELMFFITNEDEELGTEKEKE 285

The following BLAST results are available for this feature:
BLAST of MELO3C008859.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900785.16.8e-4053.74PREDICTED: uncharacterized protein LOC107991020 [Cucumis melo][more]
XP_008456244.19.5e-3446.38PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo][more]
XP_008447685.11.1e-3244.44PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
XP_011654353.13.2e-2942.03PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
XP_008448087.11.3e-2743.48PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
BLAST of MELO3C008859.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C008859.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C008859.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DYI9|A0A1S4DYI9_CUCME4.5e-4053.74uncharacterized protein LOC107991020 OS=Cucumis melo OX=3656 GN=LOC107991020 PE=... [more]
tr|A0A1S3C415|A0A1S3C415_CUCME6.3e-3446.38uncharacterized protein LOC103496243 OS=Cucumis melo OX=3656 GN=LOC103496243 PE=... [more]
tr|A0A1S3BIL2|A0A1S3BIL2_CUCME7.0e-3344.44uncharacterized protein LOC103490096 OS=Cucumis melo OX=3656 GN=LOC103490096 PE=... [more]
tr|A0A1S3BJT6|A0A1S3BJT6_CUCME8.8e-2843.48uncharacterized protein LOC103490375 OS=Cucumis melo OX=3656 GN=LOC103490375 PE=... [more]
tr|E5GCI2|E5GCI2_CUCME6.3e-1848.80Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008859.2.1MELO3C008859.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008859.2ClCG04G005600Watermelon (Charleston Gray)medwcgB529
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008859.2Cucurbita maxima (Rimu)cmamedB693
MELO3C008859.2Cucurbita maxima (Rimu)cmamedB899
MELO3C008859.2Cucurbita moschata (Rifu)cmomedB685
MELO3C008859.2Cucurbita moschata (Rifu)cmomedB888
MELO3C008859.2Cucurbita pepo (Zucchini)cpemedB089
MELO3C008859.2Cucurbita pepo (Zucchini)cpemedB542
MELO3C008859.2Bottle gourd (USVL1VR-Ls)lsimedB164
MELO3C008859.2Watermelon (Charleston Gray)medwcgB532
MELO3C008859.2Watermelon (97103) v1medwmB575
MELO3C008859.2Silver-seed gourdcarmedB0593
MELO3C008859.2Silver-seed gourdcarmedB1010
MELO3C008859.2Watermelon (97103) v2medwmbB538
MELO3C008859.2Wax gourdmedwgoB656
MELO3C008859.2Wax gourdmedwgoB659