MELO3C008859 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008859
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, unclassified
Locationchr8 : 23504691 .. 23505341 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAGTAAAAGCAAATAAGGGAATGAGAAAGAGCCTCACAAGAAAACCAAATTTCAAATGAAGCAAGTAACTATCCCAATCAAGGGCATGTATCAAAAGAATGAACCACCAATAAAAAGACTCTCGGTTGCTGAATTTTGTGCTAGGCTAGACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA

mRNA sequence

ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA

Coding sequence (CDS)

ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA

Protein sequence

MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDIGNKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH*
Homology
[Close]
BLAST of MELO3C008859 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-19
Identity = 61/125 (48.80%), Postives = 71/125 (56.80%), Query Frame = 1 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEEC----------MKEAQLVNDPNLALKLA 60
           MAESVL DAFVT LE  LQAEV +RHP TLEEC          MK+  L    N   K  
Sbjct: 166 MAESVLIDAFVTGLETNLQAEVKSRHPVTLEECSGKPKWADFAMKQLTLPIKGNFVKKEP 225

Query: 61  REELGLLEPKSREDIGNKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEE--GTSKENS 114
           +  +  L         +KGLCFRCN+KYS  H+CK K  RELM F+ NE+E  GT KE  
Sbjct: 226 QPPVKRLSDSEFRARLDKGLCFRCNDKYSPGHRCKAKTNRELMFFITNEDEELGTEKEKE 285

[Close]
BLAST of MELO3C008859 vs. TrEMBL
Match: A0A0D3CF76_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 1 

Query: 68  KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFE--- 127
           +GLC+RC+EKY + H+C   E   LM+     E+GT  + S   VEL+  +IAE  E   
Sbjct: 121 EGLCYRCDEKYIYPHRCAQPEVVVLMVL----EDGTEIDVSNYSVELEEEEIAEEVEVAA 180

Query: 128 --LKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLK 164
             + +I+ +SS  T++LK  LM  EVVVL        FV K
Sbjct: 181 ISISSIVGISSTRTIKLKGKLMGREVVVLIDNGATYNFVSK 217

[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: gi|659112485|ref|XP_008456244.1| (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 82/210 (39.05%), Postives = 108/210 (51.43%), Query Frame = 1 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLE----------------------------- 60
           MAESVLRDAF+T LEP LQAEV++RHPQTLE                             
Sbjct: 194 MAESVLRDAFLTGLEPTLQAEVVSRHPQTLEECMMEALLVNDCNLALKLSRAELGIHKYK 253

Query: 61  ---ECMKEAQLVNDPN-------------LALKLAREE-------LGLLEPKSREDIGNK 120
                  +A + N+               + LK + ++       L   E +SR +   +
Sbjct: 254 GGEPANTKAPVSNEKGNPRKNEFQMKQITIPLKGSYQKGDPLVKRLSDAEFRSRLE---R 313

Query: 121 GLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGE-----IVELKHLDIAEG- 152
           GLCFRCNEKYSH H CKVKEKRELMLF+LNEEE   +  + E     I+ELK LD  E  
Sbjct: 314 GLCFRCNEKYSHGHHCKVKEKRELMLFILNEEESADEGENSETQREKIMELKQLDTLEEA 373

[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 78/210 (37.14%), Postives = 105/210 (50.00%), Query Frame = 1 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLE-------------ECMKEAQL---VNDPN 60
           M ESVLRD F+T LEP LQ EV++ HPQTLE               +K AQ    + +P 
Sbjct: 194 MVESVLRDTFLTGLEPTLQVEVMSCHPQTLEECMMAAQLVNDRNLALKLAQAEMGIMEPK 253

Query: 61  ---------------------------LALKLAR---------EELGLLEPKSREDIGNK 120
                                      + + L R         + L   E ++R D   K
Sbjct: 254 RSEATNTKVPWNNDKGSMRKNEFQMKQITIPLKRSYHKGEPPVKRLSDAEFRARLD---K 313

Query: 121 GLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGT-----SKENSGEIVELKHLDIAEG- 152
           GLCFRCNEKYSH+H CK+KEKR+LMLF+LNEEE T     S     E +E+  L++ E  
Sbjct: 314 GLCFRCNEKYSHEHHCKIKEKRDLMLFILNEEESTEEGEGSDTQKTEPLEINQLEVLEEA 373

[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: gi|307136368|gb|ADN34181.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 102.8 bits (255), Expect = 5.9e-19
Identity = 61/125 (48.80%), Postives = 71/125 (56.80%), Query Frame = 1 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEEC----------MKEAQLVNDPNLALKLA 60
           MAESVL DAFVT LE  LQAEV +RHP TLEEC          MK+  L    N   K  
Sbjct: 166 MAESVLIDAFVTGLETNLQAEVKSRHPVTLEECSGKPKWADFAMKQLTLPIKGNFVKKEP 225

Query: 61  REELGLLEPKSREDIGNKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEE--GTSKENS 114
           +  +  L         +KGLCFRCN+KYS  H+CK K  RELM F+ NE+E  GT KE  
Sbjct: 226 QPPVKRLSDSEFRARLDKGLCFRCNDKYSPGHRCKAKTNRELMFFITNEDEELGTEKEKE 285

[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: gi|778726094|ref|XP_011659055.1| (PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 6.5e-18
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 67  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEG-----TSKENSGEIVELKHLDIAE 126
           +KGLCF CN+KY+  H+CK+KEKRELMLF+ NEEEG      S+EN+ EIVELK +D+ E
Sbjct: 44  DKGLCFTCNDKYAPGHRCKLKEKRELMLFICNEEEGGNEGENSEENTEEIVELKKMDLIE 103

Query: 127 G--FELKTIMDLSSKGTVRLKVVLMDNEVVVL 152
           G   EL+TI  LSSKGT++L  ++    V VL
Sbjct: 104 GEEVELRTITSLSSKGTMKLMGMVKGKAVTVL 135

[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: gi|659093928|ref|XP_008447791.1| (PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 8.5e-18
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAF+T LEPALQAEV++RHP TLEECM  AQLVND NLALKLA  E+G++EPK
Sbjct: 188 MAESVLRDAFLTGLEPALQAEVMSRHPHTLEECMMAAQLVNDRNLALKLAHAEMGIIEPK 247

Query: 61  SREDIGNK 69
             E    K
Sbjct: 248 RNEATSTK 255

The following BLAST results are available for this feature:
BLAST of MELO3C008859 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCI2_CUCME4.1e-1948.80Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0D3CF76_BRAOL1.4e-0639.60Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
BLAST of MELO3C008859 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112485|ref|XP_008456244.1|1.1e-2239.05PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo][more]
gi|659093726|ref|XP_008447685.1|1.4e-2037.14PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
gi|307136368|gb|ADN34181.1|5.9e-1948.80retrotransposon protein [Cucumis melo subsp. melo][more]
gi|778726094|ref|XP_011659055.1|6.5e-1856.52PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus][more]
gi|659093928|ref|XP_008447791.1|8.5e-1872.06PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008859T1MELO3C008859T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008859ClCG04G005600Watermelon (Charleston Gray)mewcgB532
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008859Watermelon (97103) v2mewmbB542
MELO3C008859Wax gourdmewgoB649
MELO3C008859Wax gourdmewgoB652
MELO3C008859Cucurbita maxima (Rimu)cmameB610
MELO3C008859Cucurbita maxima (Rimu)cmameB801
MELO3C008859Cucurbita moschata (Rifu)cmomeB599
MELO3C008859Cucurbita moschata (Rifu)cmomeB785
MELO3C008859Watermelon (Charleston Gray)mewcgB533
MELO3C008859Watermelon (97103) v1mewmB587
MELO3C008859Cucurbita pepo (Zucchini)cpemeB070
MELO3C008859Cucurbita pepo (Zucchini)cpemeB459
MELO3C008859Bottle gourd (USVL1VR-Ls)lsimeB157
MELO3C008859Silver-seed gourdcarmeB0586
MELO3C008859Silver-seed gourdcarmeB0998