MELO3C008787 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008787
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Tripartite motif-containing protein 49
Location	chr8 : 24926247 .. 24926744 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTAAGATCTTTGCTGCAATTGCGATTAGTGGCAGCAACAACCTTACCTTTTTAAAAGAACTTGTGGATGGTTACTTCCAAGGTGTAGAGAACCATAATCAAATGTGTTTCTCAATTTTGCTCCAATCAACTAAGGATGCTCAATTAATGGAGGCGAAAGGTTTTGTGAAGACTTTGCGACTTGATGAGAACTGTATATTGGAGGAGACAAGTACTGTCCAACGCCGCCTTGCGCGACTATCCGCCAAAGAGGCTAAACTAGAAGCAAAACTAAAAGTGGTACGGACAGAGTCCACCAAACTTTCTGACATAATTTCTAAAAATGAGATAGAGCTAAAGCAGAAGCAGCATGAGATTTCAAAGACTTGCGAGGAAATTGACAAACATGAATGTGCCCCCATCATTGAAGATGTTGATGCAAAAATGTTGTCGGCACTCCGTGAATCTTTAAAAAACACATTAGAAGAGCTTAAGAACCTTAAATGGACCCCTTGA

mRNA sequence

ATGCGTAAGATCTTTGCTGCAATTGCGATTAGTGGCAGCAACAACCTTACCTTTTTAAAAGAACTTGTGGATGGTTACTTCCAAGGTGTAGAGAACCATAATCAAATGTGTTTCTCAATTTTGCTCCAATCAACTAAGGATGCTCAATTAATGGAGGCGAAAGGTTTTGTGAAGACTTTGCGACTTGATGAGAACTGTATATTGGAGGAGACAAGTACTGTCCAACGCCGCCTTGCGCGACTATCCGCCAAAGAGGCTAAACTAGAAGCAAAACTAAAAGTGGTACGGACAGAGTCCACCAAACTTTCTGACATAATTTCTAAAAATGAGATAGAGCTAAAGCAGAAGCAGCATGAGATTTCAAAGACTTGCGAGGAAATTGACAAACATGAATGTGCCCCCATCATTGAAGATGTTGATGCAAAAATGTTGTCGGCACTCCGTGAATCTTTAAAAAACACATTAGAAGAGCTTAAGAACCTTAAATGGACCCCTTGA

Coding sequence (CDS)

ATGCGTAAGATCTTTGCTGCAATTGCGATTAGTGGCAGCAACAACCTTACCTTTTTAAAAGAACTTGTGGATGGTTACTTCCAAGGTGTAGAGAACCATAATCAAATGTGTTTCTCAATTTTGCTCCAATCAACTAAGGATGCTCAATTAATGGAGGCGAAAGGTTTTGTGAAGACTTTGCGACTTGATGAGAACTGTATATTGGAGGAGACAAGTACTGTCCAACGCCGCCTTGCGCGACTATCCGCCAAAGAGGCTAAACTAGAAGCAAAACTAAAAGTGGTACGGACAGAGTCCACCAAACTTTCTGACATAATTTCTAAAAATGAGATAGAGCTAAAGCAGAAGCAGCATGAGATTTCAAAGACTTGCGAGGAAATTGACAAACATGAATGTGCCCCCATCATTGAAGATGTTGATGCAAAAATGTTGTCGGCACTCCGTGAATCTTTAAAAAACACATTAGAAGAGCTTAAGAACCTTAAATGGACCCCTTGA

Protein sequence

MRKIFAAIAISGSNNLTFLKELVDGYFQGVENHNQMCFSILLQSTKDAQLMEAKGFVKTLRLDENCILEETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSDIISKNEIELKQKQHEISKTCEEIDKHECAPIIEDVDAKMLSALRESLKNTLEELKNLKWTP*

Homology

[Close]

BLAST of MELO3C008787 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 43/154 (27.92%), Postives = 75/154 (48.70%), Query Frame = 1


Query: 13  SNNLTFLKELVDGYFQGVENHNQMCFSI---LLQSTKDAQLMEAKGFVKTLRLDENCILE 72
           ++ LT L+E ++ Y + V+N N +  S    LL + K  QL E    +K        +  
Sbjct: 546 ADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLSTDKARQLNEKTSAIKEALTLVKQLRG 605

Query: 73  ETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSDIISKNEIELKQKQHEISKTCEEIDK 132
           +   +Q R A LS +  +LE +L  +  E  +LS +  +    + Q++ E+    +E++ 
Sbjct: 606 DVKVIQERAAELSLERKELEKRLWSINAEFEQLSILSCEKAEAIDQQELEVFMLQDEVNT 665

Query: 133 HECAPIIEDVDAKMLSALRESLKNTLEELKNLKW 164
            E  P I     K L+ +R+S++   EE KN KW
Sbjct: 666 LESTPAITKEAIKALATVRQSMEVAREEFKNFKW 699

[Close]

BLAST of MELO3C008787 vs. NCBI nr
Match: gi|778665095|ref|XP_011648484.1| (PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 90/165 (54.55%), Postives = 99/165 (60.00%), Query Frame = 1


Query: 1   MRKIFAAIAISGSNNLTFLKELVDGYFQGVENHNQMCFSILLQSTKDAQLMEAKGFVKTL 60
           M KIF AIA S +NNL  L EL                             EAKGFVKTL
Sbjct: 586 MHKIFDAIATSDNNNLIVLTEL---------------------------FTEAKGFVKTL 645

Query: 61  RLDENCILEETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSDIISKNEIELKQKQHEI 120
           R+DEN IL ET+T +RRL RLSAKEAKLEAKLK+                     KQHEI
Sbjct: 646 RVDENRILAETNTAKRRLTRLSAKEAKLEAKLKM---------------------KQHEI 702

Query: 121 SKTCEEIDKHECAPIIEDVDAKMLSALRESLKNTLEELKNLKWTP 166
           SKTCEEIDK ECA I+ D+DAKMLS LRESL++TLEELKN KWTP
Sbjct: 706 SKTCEEIDKLECASIVGDIDAKMLSTLRESLESTLEELKNFKWTP 702

[Close]

BLAST of MELO3C008787 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 43/154 (27.92%), Postives = 75/154 (48.70%), Query Frame = 1


Query: 13  SNNLTFLKELVDGYFQGVENHNQMCFSI---LLQSTKDAQLMEAKGFVKTLRLDENCILE 72
           ++ LT L+E ++ Y + V+N N +  S    LL + K  QL E    +K        +  
Sbjct: 546 ADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLSTDKARQLNEKTSAIKEALTLVKQLRG 605

Query: 73  ETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSDIISKNEIELKQKQHEISKTCEEIDK 132
           +   +Q R A LS +  +LE +L  +  E  +LS +  +    + Q++ E+    +E++ 
Sbjct: 606 DVKVIQERAAELSLERKELEKRLWSINAEFEQLSILSCEKAEAIDQQELEVFMLQDEVNT 665

Query: 133 HECAPIIEDVDAKMLSALRESLKNTLEELKNLKW 164
            E  P I     K L+ +R+S++   EE KN KW
Sbjct: 666 LESTPAITKEAIKALATVRQSMEVAREEFKNFKW 699

The following BLAST results are available for this feature:

BLAST of MELO3C008787 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB9_CUCME	1.2e-07	27.92	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C008787 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665095\|ref\|XP_011648484.1\|	2.0e-32	54.55	PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus]	[more]
gi\|307136292\|gb\|ADN34118.1\|	1.7e-07	27.92	hypothetical protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008787T1	MELO3C008787T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 141..164 score: -coord: 78..98 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008787	Cucurbita maxima (Rimu)	cmameB610
MELO3C008787	Cucurbita maxima (Rimu)	cmameB801
MELO3C008787	Cucurbita moschata (Rifu)	cmomeB599
MELO3C008787	Cucurbita moschata (Rifu)	cmomeB785
MELO3C008787	Wild cucumber (PI 183967)	cpimeB323
MELO3C008787	Cucumber (Chinese Long) v2	cumeB324
MELO3C008787	Watermelon (Charleston Gray)	mewcgB532
MELO3C008787	Watermelon (97103) v1	mewmB585
MELO3C008787	Cucurbita pepo (Zucchini)	cpemeB070
MELO3C008787	Cucurbita pepo (Zucchini)	cpemeB459
MELO3C008787	Bottle gourd (USVL1VR-Ls)	lsimeB157
MELO3C008787	Cucumber (Gy14) v2	cgybmeB280
MELO3C008787	Silver-seed gourd	carmeB0283
MELO3C008787	Silver-seed gourd	carmeB0627
MELO3C008787	Cucumber (Chinese Long) v3	cucmeB328
MELO3C008787	Watermelon (97103) v2	mewmbB540
MELO3C008787	Wax gourd	mewgoB652
MELO3C008787	Cucumber (Gy14) v1	cgymeB009