MELO3C008755 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008755
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibonuclease PH
Locationchr5 : 18572605 .. 18572850 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCTGACGACATAATGGGCACACAACCCGAACGTGCAAGTGATGGTAGGAATGCTTCAAACGGATCGAAGAGGAAGCAGGGAAGCCAGCCAGTAGAAACTACGAAAATCATTCGTAGTGCCATGGAATACGCCAATAACCATCTTAACCACATTGCAGACTGGTCGATCATACAACGCCAAGATGCAAGCGTAACATGGCAAGAGGTGTCGTTCTACAGTTACAGGGAATCCTCGAACTGA

mRNA sequence

ATGTCGTCTGACGACATAATGGGCACACAACCCGAACGTGCAAGTGATGGTAGGAATGCTTCAAACGGATCGAAGAGGAAGCAGGGAAGCCAGCCAGTAGAAACTACGAAAATCATTCGTAGTGCCATGGAATACGCCAATAACCATCTTAACCACATTGCAGACTGGTCGATCATACAACGCCAAGATGCAAGCGTAACATGGCAAGAGGTGTCGTTCTACAGTTACAGGGAATCCTCGAACTGA

Coding sequence (CDS)

ATGTCGTCTGACGACATAATGGGCACACAACCCGAACGTGCAAGTGATGGTAGGAATGCTTCAAACGGATCGAAGAGGAAGCAGGGAAGCCAGCCAGTAGAAACTACGAAAATCATTCGTAGTGCCATGGAATACGCCAATAACCATCTTAACCACATTGCAGACTGGTCGATCATACAACGCCAAGATGCAAGCGTAACATGGCAAGAGGTGTCGTTCTACAGTTACAGGGAATCCTCGAACTGA

Protein sequence

MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQRQDASVTWQEVSFYSYRESSN*
Homology
[Close]
BLAST of MELO3C008755 vs. TrEMBL
Match: E5GBS5_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-12
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS D+ M ++  R+ DGRNAS+ SKRK+  + +E   II++AMEYAN+ LN I DW I++
Sbjct: 116 MSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILR 175

Query: 61  RQDASVTWQEV 72
            QDASVT QEV
Sbjct: 176 NQDASVTQQEV 186

[Close]
BLAST of MELO3C008755 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-11
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS DD+M T+  R S+ RN S+GSKRK+     ++  I+R+A+EY N  L+ IA+W I+Q
Sbjct: 535 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 594

Query: 61  RQDASVTWQEV 72
           RQDA+ T QE+
Sbjct: 595 RQDATQTRQEI 605

[Close]
BLAST of MELO3C008755 vs. TrEMBL
Match: E5GBB1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.7e-07
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1 

Query: 1  MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWS 58
          M S+++ G + ++AS+ RN S+GSKRKQGS+  E  ++I+SAME+ N+ L    DWS
Sbjct: 26 MLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEMVEVIKSAMEFGNDQLKAFEDWS 82

[Close]
BLAST of MELO3C008755 vs. TrEMBL
Match: A0A0A0M036_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654880 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-06
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHL 51
           MSSD+++GT   + S+GRN SNG+KRKQG Q  E  +++R+AME+AN+ L
Sbjct: 71  MSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPL 120

[Close]
BLAST of MELO3C008755 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS D++MGT+  R S+GR  S+GSK+K+G   +++  I+R+A+EY N  LN IA+W ++Q
Sbjct: 129 MSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRIAEWHVLQ 188

Query: 61  RQDASVTWQEV 72
           RQDA+ T QEV
Sbjct: 189 RQDATQTRQEV 199

[Close]
BLAST of MELO3C008755 vs. NCBI nr
Match: gi|307136067|gb|ADN33917.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-12
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS D+ M ++  R+ DGRNAS+ SKRK+  + +E   II++AMEYAN+ LN I DW I++
Sbjct: 116 MSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILR 175

Query: 61  RQDASVTWQEV 72
            QDASVT QEV
Sbjct: 176 NQDASVTQQEV 186

[Close]
BLAST of MELO3C008755 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 6.4e-11
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS+DD+M T+  R S+ RN S+GSKRK      ++  I+R+A++Y N  L+ IA+W I+Q
Sbjct: 521 MSADDLMETRTARVSERRNVSSGSKRKHPGHATDSGDIVRTAIKYGNEQLHRIAEWPILQ 580

Query: 61  RQDASVTWQEV 72
           RQDAS T QE+
Sbjct: 581 RQDASQTRQEI 591

[Close]
BLAST of MELO3C008755 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 75.1 bits (183), Expect = 6.4e-11
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS DD+M T+  R S+ RN S+GSKRK+     ++  I+R+A+EY N  L+ IA+W I+Q
Sbjct: 535 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 594

Query: 61  RQDASVTWQEV 72
           RQDA+ T QE+
Sbjct: 595 RQDATQTRQEI 605

[Close]
BLAST of MELO3C008755 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1 

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS DD+M T+  R S+ RN S+GSKRK+     ++  I+R A+EY N  L+ IA+W I+Q
Sbjct: 387 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRIAIEYGNEQLHRIAEWPILQ 446

Query: 61  RQDASVTWQEV 72
           RQDA+ T QE+
Sbjct: 447 RQDATQTRQEI 457

The following BLAST results are available for this feature:
BLAST of MELO3C008755 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBS5_CUCME2.4e-1254.93Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME4.4e-1149.30Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB1_CUCME8.7e-0747.37Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M036_CUCSA3.3e-0654.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654880 PE=4 SV=1[more]
BLAST of MELO3C008755 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123900|ref|XP_008461893.1|1.2e-1250.70PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|307136067|gb|ADN33917.1|3.4e-1254.93hypothetical protein [Cucumis melo subsp. melo][more]
gi|659126986|ref|XP_008463462.1|6.4e-1149.30PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|6.4e-1149.30retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659133698|ref|XP_008466863.1|1.4e-1049.30PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008755T1MELO3C008755T1mRNA