MELO3C008746 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008746
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ycf1
Location	chr5 : 18413937 .. 18414243 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGCCAAAAAAGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCATTCTCCGAGCTTGGGTTATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAACTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAATTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTAGAACAATCACAAACACTTTTTAAATTATGGATCTACTACCAGAAACTCAATGCGTA

mRNA sequence

ATGCGAGCCAAAAAAGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCATTCTCCGAGCTTGGGTTATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAACTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAATTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTAGAACAATCACAAACACTTTTTAAATTATGGATCTACTACCAGAAACTCAATGCGTA

Coding sequence (CDS)

ATGCGAGCCAAAAAAGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCATTCTCCGAGCTTGGGTTATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAACTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAATTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTAG

Protein sequence

MRAKKGLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTIIVLALPYLLFHFF*

Homology

[Close]

BLAST of MELO3C008746 vs. Swiss-Prot
Match: TI214_CUCSA (Protein TIC 214 OS=Cucumis sativus GN=TIC214 PE=3 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-37
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRAW+MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRAWLMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RP+TI VLALPYLLFHFF
Sbjct: 86  RPYTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. Swiss-Prot
Match: TI214_NICSY (Protein TIC 214 OS=Nicotiana sylvestris GN=TIC214 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-37
Identity = 75/78 (96.15%), Postives = 74/78 (94.87%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. Swiss-Prot
Match: TI214_NICTO (Protein TIC 214 OS=Nicotiana tomentosiformis GN=TIC214 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-37
Identity = 75/78 (96.15%), Postives = 74/78 (94.87%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. Swiss-Prot
Match: TI214_SOLTU (Protein TIC 214 OS=Solanum tuberosum GN=TIC214 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-37
Identity = 75/78 (96.15%), Postives = 74/78 (94.87%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. Swiss-Prot
Match: TI214_SOLBU (Protein TIC 214 OS=Solanum bulbocastanum GN=TIC214 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-37
Identity = 75/78 (96.15%), Postives = 74/78 (94.87%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. TrEMBL
Match: A0A0N7CK09_SOLCO (Ycf1 OS=Solanum commersonii GN=ycf1 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.9e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. TrEMBL
Match: A0A165TPQ1_9SOLA (Hypothetical chloroplast RF19 OS=Iochroma umbellatum GN=ycf1 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.9e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. TrEMBL
Match: A0A144YW14_9SOLA (Hypothetical chloroplast RF19 OS=Iochroma lehmannii GN=ycf1 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.9e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. TrEMBL
Match: A0A144YWC3_9SOLA (Hypothetical chloroplast RF19 OS=Iochroma lehmannii GN=ycf1 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.9e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. TrEMBL
Match: A0A060D4V1_9GENT (Hypothetical chloroplast RF1 OS=Rhazya stricta GN=ycf1 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.9e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 146.7 bits (369), Expect = 6.2e-36
Identity = 74/81 (91.36%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHL 65
           GLYYGFLTTFSIGPSYLF+LRA VM   EEGTEKKVSATTGFI GQLMMFISIYYAPLHL
Sbjct: 27  GLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHL 86

Query: 66  ALGRPHTIIVLALPYLLFHFF 84
           ALGRPHTI VLALPYLLFHFF
Sbjct: 87  ALGRPHTITVLALPYLLFHFF 107

[Close]

BLAST of MELO3C008746 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 146.7 bits (369), Expect = 6.2e-36
Identity = 74/81 (91.36%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHL 65
           GLYYGFLTTFSIGPSYLF+LRA VM   EEGTEKKVSATTGFI GQLMMFISIYYAPLHL
Sbjct: 27  GLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHL 86

Query: 66  ALGRPHTIIVLALPYLLFHFF 84
           ALGRPHTI VLALPYLLFHFF
Sbjct: 87  ALGRPHTITVLALPYLLFHFF 107

[Close]

BLAST of MELO3C008746 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 146.7 bits (369), Expect = 6.2e-36
Identity = 74/81 (91.36%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHL 65
           GLYYGFLTTFSIGPSYLF+LRA VM   EEGTEKKVSATTGFI GQLMMFISIYYAPLHL
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHL 85

Query: 66  ALGRPHTIIVLALPYLLFHFF 84
           ALGRPHTI VLALPYLLFHFF
Sbjct: 86  ALGRPHTITVLALPYLLFHFF 106

[Close]

BLAST of MELO3C008746 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 144.4 bits (363), Expect = 3.1e-35
Identity = 73/81 (90.12%), Postives = 72/81 (88.89%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHL 65
           GLYYGFLTTFSIGP YLF+LRA VM   EEGTEKKVSATTGFI GQLMMFISIYYAPLHL
Sbjct: 26  GLYYGFLTTFSIGPFYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHL 85

Query: 66  ALGRPHTIIVLALPYLLFHFF 84
           ALGRPHTI VLALPYLLFHFF
Sbjct: 86  ALGRPHTITVLALPYLLFHFF 106

[Close]

BLAST of MELO3C008746 vs. NCBI nr
Match: gi|74027156|gb|AAZ94706.1| (hypothetical protein [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 2.9e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRAW+MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRAWLMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RP+TI VLALPYLLFHFF
Sbjct: 86  RPYTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. NCBI nr
Match: gi|68164850|ref|YP_247646.1| (hypothetical protein CsCp100 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 2.9e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRAW+MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 27  GLYYGFLTTFSIGPSYLFLLRAWLMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 86

Query: 66  RPHTIIVLALPYLLFHFF 84
           RP+TI VLALPYLLFHFF
Sbjct: 87  RPYTITVLALPYLLFHFF 104

[Close]

BLAST of MELO3C008746 vs. NCBI nr
Match: gi|158518591|sp|Q4VZL0.2|TI214_CUCSA (RecName: Full=Protein TIC 214; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 214; Short=AtTIC214)

HSP 1 Score: 156.0 bits (393), Expect = 2.9e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRAW+MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRAWLMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RP+TI VLALPYLLFHFF
Sbjct: 86  RPYTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. NCBI nr
Match: gi|68164862|ref|YP_247658.1| (hypothetical protein CsCp113 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 2.9e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRAW+MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRAWLMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RP+TI VLALPYLLFHFF
Sbjct: 86  RPYTITVLALPYLLFHFF 103

[Close]

BLAST of MELO3C008746 vs. NCBI nr
Match: gi|641803868|gb|AIA77019.1| (hypothetical chloroplast RF19 (chloroplast) (chloroplast) [Capsicum annuum var. glabriusculum])

HSP 1 Score: 154.5 bits (389), Expect = 8.5e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 6   GLYYGFLTTFSIGPSYLFILRAWVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 65
           GLYYGFLTTFSIGPSYLF+LRA VMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG
Sbjct: 26  GLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALG 85

Query: 66  RPHTIIVLALPYLLFHFF 84
           RPHTI VLALPYLLFHFF
Sbjct: 86  RPHTITVLALPYLLFHFF 103

The following BLAST results are available for this feature:

BLAST of MELO3C008746 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI214_CUCSA	1.8e-37	94.87	Protein TIC 214 OS=Cucumis sativus GN=TIC214 PE=3 SV=2	[more]
TI214_NICSY	5.3e-37	96.15	Protein TIC 214 OS=Nicotiana sylvestris GN=TIC214 PE=3 SV=1	[more]
TI214_NICTO	5.3e-37	96.15	Protein TIC 214 OS=Nicotiana tomentosiformis GN=TIC214 PE=3 SV=1	[more]
TI214_SOLTU	5.3e-37	96.15	Protein TIC 214 OS=Solanum tuberosum GN=TIC214 PE=3 SV=1	[more]
TI214_SOLBU	5.3e-37	96.15	Protein TIC 214 OS=Solanum bulbocastanum GN=TIC214 PE=3 SV=1	[more]

BLAST of MELO3C008746 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0N7CK09_SOLCO	5.9e-35	96.15	Ycf1 OS=Solanum commersonii GN=ycf1 PE=4 SV=1	[more]
A0A165TPQ1_9SOLA	5.9e-35	96.15	Hypothetical chloroplast RF19 OS=Iochroma umbellatum GN=ycf1 PE=4 SV=1	[more]
A0A144YW14_9SOLA	5.9e-35	96.15	Hypothetical chloroplast RF19 OS=Iochroma lehmannii GN=ycf1 PE=4 SV=1	[more]
A0A144YWC3_9SOLA	5.9e-35	96.15	Hypothetical chloroplast RF19 OS=Iochroma lehmannii GN=ycf1 PE=4 SV=1	[more]
A0A060D4V1_9GENT	5.9e-35	96.15	Hypothetical chloroplast RF1 OS=Rhazya stricta GN=ycf1 PE=4 SV=1	[more]

BLAST of MELO3C008746 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01130.1	6.2e-36	91.36	ATCG01130.1 Ycf1 protein	[more]
ATCG01000.1	6.2e-36	91.36	ATCG01000.1 Ycf1 protein	[more]
ATMG00370.1	6.2e-36	91.36	ATMG00370.1 Ycf1 protein	[more]
AT2G07739.1	3.1e-35	90.12	Ycf1 protein	[more]

BLAST of MELO3C008746 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|74027156\|gb\|AAZ94706.1\|	2.9e-35	94.87	hypothetical protein [Cucumis sativus]	[more]
gi\|68164850\|ref\|YP_247646.1\|	2.9e-35	94.87	hypothetical protein CsCp100 [Cucumis sativus]	[more]
gi\|158518591\|sp\|Q4VZL0.2\|TI214_CUCSA	2.9e-35	94.87	RecName: Full=Protein TIC 214; AltName: Full=Translocon at the inner envelope me...	[more]
gi\|68164862\|ref\|YP_247658.1\|	2.9e-35	94.87	hypothetical protein CsCp113 [Cucumis sativus]	[more]
gi\|641803868\|gb\|AIA77019.1\|	8.5e-35	96.15	hypothetical chloroplast RF19 (chloroplast) (chloroplast) [Capsicum annuum var. ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008896	TIC214

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008746T1	MELO3C008746T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 6..83 score: 3.9
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 6..83 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008746	Watermelon (97103) v2	mewmbB369
MELO3C008746	Wax gourd	mewgoB456
MELO3C008746	Cucumber (Gy14) v1	cgymeB320
MELO3C008746	Cucurbita maxima (Rimu)	cmameB175
MELO3C008746	Cucurbita maxima (Rimu)	cmameB737
MELO3C008746	Cucurbita moschata (Rifu)	cmomeB164
MELO3C008746	Cucurbita moschata (Rifu)	cmomeB725
MELO3C008746	Wild cucumber (PI 183967)	cpimeB139
MELO3C008746	Cucumber (Chinese Long) v2	cumeB133
MELO3C008746	Watermelon (Charleston Gray)	mewcgB367
MELO3C008746	Cucurbita pepo (Zucchini)	cpemeB102
MELO3C008746	Cucurbita pepo (Zucchini)	cpemeB777
MELO3C008746	Bottle gourd (USVL1VR-Ls)	lsimeB115
MELO3C008746	Cucumber (Gy14) v2	cgybmeB120
MELO3C008746	Silver-seed gourd	carmeB0004
MELO3C008746	Silver-seed gourd	carmeB0170
MELO3C008746	Cucumber (Chinese Long) v3	cucmeB141