MELO3C008744 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008744
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Auxin efflux carrier family protein
Location	chr5 : 18337462 .. 18337617 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTGCAAGAAAAATTGATAGCTTGTGGACCAACACTCACTATAGTTGAAATGGTGTTGAAGTTTATTGCTGGACCAGCTGCAATGGCCATTGGCTCCGTTGCCATGGGTTTGCATGGTGATGTTCTTCGTGTAGCTATAGTTCAGGTTTAA

mRNA sequence

ATGGCATTGCAAGAAAAATTGATAGCTTGTGGACCAACACTCACTATAGTTGAAATGGTGTTGAAGTTTATTGCTGGACCAGCTGCAATGGCCATTGGCTCCGTTGCCATGGGTTTGCATGGTGATGTTCTTCGTGTAGCTATAGTTCAGGTTTAA

Coding sequence (CDS)

ATGGCATTGCAAGAAAAATTGATAGCTTGTGGACCAACACTCACTATAGTTGAAATGGTGTTGAAGTTTATTGCTGGACCAGCTGCAATGGCCATTGGCTCCGTTGCCATGGGTTTGCATGGTGATGTTCTTCGTGTAGCTATAGTTCAGGTTTAA

Protein sequence

MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQV*

Homology

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BLAST of MELO3C008744 vs. Swiss-Prot
Match: PIN5_ARATH (Auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=2 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 5.5e-16
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLI CG +LT++ MVLKFIAGPAAMAIGS+ +GLHGDVLRVAI+Q
Sbjct: 253 MALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVAIIQ 302

[Close]

BLAST of MELO3C008744 vs. Swiss-Prot
Match: PIN6_ORYSJ (Probable auxin efflux carrier component 6 OS=Oryza sativa subsp. japonica GN=PIN6 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.2e-12
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MA QEK+IACG +   + +VLKF  GPAAMAIGS+A+GL GDVLRVAI+Q
Sbjct: 265 MAQQEKIIACGTSFAALGLVLKFALGPAAMAIGSIAVGLRGDVLRVAIIQ 314

[Close]

BLAST of MELO3C008744 vs. Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-10
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ K+IACG ++    M ++FI GPA MA+  +A+GLHGD+LR+AIVQ
Sbjct: 520 MALQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQ 569

[Close]

BLAST of MELO3C008744 vs. Swiss-Prot
Match: PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.6e-10
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ KLIACG ++    M ++F+ GPA MA+ ++A+GL GD+LRVAIVQ
Sbjct: 544 MALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLRGDLLRVAIVQ 593

[Close]

BLAST of MELO3C008744 vs. Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-09
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ KLIACG +     M ++F  GPA MA+ ++A+GL GD+LRVAIVQ
Sbjct: 523 MALQPKLIACGNSTATFAMAVRFFTGPAVMAVAAMAIGLRGDLLRVAIVQ 572

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BLAST of MELO3C008744 vs. TrEMBL
Match: A0A0A0LH23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074170 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-17
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACGPTLTIV MVLKFIAGPAAMAIGS+AMGLHGDVLRVAI+Q
Sbjct: 270 MALQEKLIACGPTLTIVGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 319

[Close]

BLAST of MELO3C008744 vs. TrEMBL
Match: D7M857_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_326097 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-14
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLI CG +LT++ MVLKFIAGPAAMAIGS+A+GLHGDVLRVAI+Q
Sbjct: 254 MALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIALGLHGDVLRVAIIQ 303

[Close]

BLAST of MELO3C008744 vs. TrEMBL
Match: V7B1G0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G055200g PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-14
Identity = 40/50 (80.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ+KLIACGP+LT+  +VLKFIAGPAAMAIG++A+GLHGDVLRVAI+Q
Sbjct: 280 MALQDKLIACGPSLTVFGLVLKFIAGPAAMAIGAIAVGLHGDVLRVAIIQ 329

[Close]

BLAST of MELO3C008744 vs. TrEMBL
Match: A0A087G7L8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G172900 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.6e-14
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLI CG +LT++ M+LKFIAGPAAMAIGS+A+GLHGDVLRVAI+Q
Sbjct: 252 MALQEKLIVCGTSLTLIGMLLKFIAGPAAMAIGSIALGLHGDVLRVAIIQ 301

[Close]

BLAST of MELO3C008744 vs. TrEMBL
Match: M5VYT3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007621mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.6e-14
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEK +ACG +LTI+ MVL+FIAGPAAMAIGS+A+GLHGDVLRVAI+Q
Sbjct: 263 MALQEKFVACGTSLTIIGMVLRFIAGPAAMAIGSIAVGLHGDVLRVAIIQ 312

[Close]

BLAST of MELO3C008744 vs. TAIR10
Match: AT5G16530.1 (AT5G16530.1 Auxin efflux carrier family protein)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-17
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLI CG +LT++ MVLKFIAGPAAMAIGS+ +GLHGDVLRVAI+Q
Sbjct: 253 MALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVAIIQ 302

[Close]

BLAST of MELO3C008744 vs. TAIR10
Match: AT2G01420.2 (AT2G01420.2 Auxin efflux carrier family protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-11
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ K+IACG ++    M ++FI GPA MA+  +A+GLHGD+LR+AIVQ
Sbjct: 520 MALQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQ 569

[Close]

BLAST of MELO3C008744 vs. TAIR10
Match: AT1G70940.1 (AT1G70940.1 Auxin efflux carrier family protein)

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-11
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ KLIACG ++    M ++F+ GPA MA+ ++A+GL GD+LRVAIVQ
Sbjct: 544 MALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLRGDLLRVAIVQ 593

[Close]

BLAST of MELO3C008744 vs. TAIR10
Match: AT1G23080.1 (AT1G23080.1 Auxin efflux carrier family protein)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-10
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ KLIACG +     M ++F  GPA MA+ ++A+GL GD+LRVAIVQ
Sbjct: 523 MALQPKLIACGNSTATFAMAVRFFTGPAVMAVAAMAIGLRGDLLRVAIVQ 572

[Close]

BLAST of MELO3C008744 vs. TAIR10
Match: AT5G57090.1 (AT5G57090.1 Auxin efflux carrier family protein)

HSP 1 Score: 56.2 bits (134), Expect = 6.9e-09
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ K+IACG ++    M ++F+ GPA +A  S+A+G+ GD+L +AIVQ
Sbjct: 551 MALQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGIRGDLLHIAIVQ 600

[Close]

BLAST of MELO3C008744 vs. NCBI nr
Match: gi|659082484|ref|XP_008441865.1| (PREDICTED: putative auxin efflux carrier component 8 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 4.9e-17
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1


Query: 1  MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
          MALQEKLIACGPTLTIV MVLKFIAGPAAMAIGSVAMGLHGDVLRVAI+Q
Sbjct: 28 MALQEKLIACGPTLTIVGMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIIQ 77

[Close]

BLAST of MELO3C008744 vs. NCBI nr
Match: gi|449470249|ref|XP_004152830.1| (PREDICTED: putative auxin efflux carrier component 8 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 6.4e-17
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACGPTLTIV MVLKFIAGPAAMAIGS+AMGLHGDVLRVAI+Q
Sbjct: 272 MALQEKLIACGPTLTIVGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 321

[Close]

BLAST of MELO3C008744 vs. NCBI nr
Match: gi|700206136|gb|KGN61255.1| (hypothetical protein Csa_2G074170 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 6.4e-17
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACGPTLTIV MVLKFIAGPAAMAIGS+AMGLHGDVLRVAI+Q
Sbjct: 270 MALQEKLIACGPTLTIVGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 319

[Close]

BLAST of MELO3C008744 vs. NCBI nr
Match: gi|720039508|ref|XP_010268327.1| (PREDICTED: putative auxin efflux carrier component 8 [Nelumbo nucifera])

HSP 1 Score: 87.4 bits (215), Expect = 7.9e-15
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQEKLIACGP LTI  MVLKFIAGPAAMAIG++A+GLHGDVLRVAI+Q
Sbjct: 265 MALQEKLIACGPPLTIFGMVLKFIAGPAAMAIGAIAVGLHGDVLRVAIIQ 314

[Close]

BLAST of MELO3C008744 vs. NCBI nr
Match: gi|593332625|ref|XP_007139738.1| (hypothetical protein PHAVU_008G055200g [Phaseolus vulgaris])

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-14
Identity = 40/50 (80.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 1   MALQEKLIACGPTLTIVEMVLKFIAGPAAMAIGSVAMGLHGDVLRVAIVQ 51
           MALQ+KLIACGP+LT+  +VLKFIAGPAAMAIG++A+GLHGDVLRVAI+Q
Sbjct: 280 MALQDKLIACGPSLTVFGLVLKFIAGPAAMAIGAIAVGLHGDVLRVAIIQ 329

The following BLAST results are available for this feature:

BLAST of MELO3C008744 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PIN5_ARATH	5.5e-16	80.00	Auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=2 SV=2	[more]
PIN6_ORYSJ	6.2e-12	68.00	Probable auxin efflux carrier component 6 OS=Oryza sativa subsp. japonica GN=PIN...	[more]
PIN4_ARATH	2.0e-10	58.00	Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1	[more]
PIN3_ARATH	7.6e-10	58.00	Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1	[more]
PIN7_ARATH	3.8e-09	58.00	Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2	[more]

BLAST of MELO3C008744 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH23_CUCSA	4.5e-17	94.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074170 PE=4 SV=1	[more]
D7M857_ARALL	2.1e-14	82.00	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
V7B1G0_PHAVU	2.1e-14	80.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G055200g PE=4 SV=1	[more]
A0A087G7L8_ARAAL	3.6e-14	80.00	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G172900 PE=4 SV=1	[more]
M5VYT3_PRUPE	3.6e-14	80.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007621mg PE=4 SV=1	[more]

BLAST of MELO3C008744 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16530.1	3.1e-17	80.00	Auxin efflux carrier family protein	[more]
AT2G01420.2	1.1e-11	58.00	Auxin efflux carrier family protein	[more]
AT1G70940.1	4.3e-11	58.00	Auxin efflux carrier family protein	[more]
AT1G23080.1	2.1e-10	58.00	Auxin efflux carrier family protein	[more]
AT5G57090.1	6.9e-09	50.00	Auxin efflux carrier family protein	[more]

BLAST of MELO3C008744 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082484\|ref\|XP_008441865.1\|	4.9e-17	96.00	PREDICTED: putative auxin efflux carrier component 8 [Cucumis melo]	[more]
gi\|449470249\|ref\|XP_004152830.1\|	6.4e-17	94.00	PREDICTED: putative auxin efflux carrier component 8 [Cucumis sativus]	[more]
gi\|700206136\|gb\|KGN61255.1\|	6.4e-17	94.00	hypothetical protein Csa_2G074170 [Cucumis sativus]	[more]
gi\|720039508\|ref\|XP_010268327.1\|	7.9e-15	86.00	PREDICTED: putative auxin efflux carrier component 8 [Nelumbo nucifera]	[more]
gi\|593332625\|ref\|XP_007139738.1\|	3.0e-14	80.00	hypothetical protein PHAVU_008G055200g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004776	Mem_trans

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010252	auxin homeostasis
biological_process	GO:0080162	intracellular auxin transport
biological_process	GO:0009555	pollen development
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0010315	auxin efflux
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0080161	auxin transmembrane transporter activity
molecular_function	GO:0010329	auxin efflux transmembrane transporter activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008744T1	MELO3C008744T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004776	Membrane transport protein	PFAM	PF03547	Mem_trans	coord: 1..50 score: 8.2
None	No IPR available	PANTHER	PTHR31752	FAMILY NOT NAMED	coord: 1..51 score: 5.5
None	No IPR available	PANTHER	PTHR31752:SF2	AUXIN EFFLUX CARRIER COMPONENT 8-RELATED	coord: 1..51 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008744	ClCG11G010840	Watermelon (Charleston Gray)	mewcgB367
MELO3C008744	Cla97C11G217010	Watermelon (97103) v2	mewmbB369
MELO3C008744	Bhi06G000984	Wax gourd	mewgoB456
MELO3C008744	CSPI02G07160	Wild cucumber (PI 183967)	cpimeB139
MELO3C008744	Cucsa.178590	Cucumber (Gy14) v1	cgymeB320
MELO3C008744	CmaCh12G009550	Cucurbita maxima (Rimu)	cmameB175
MELO3C008744	CmoCh12G009550	Cucurbita moschata (Rifu)	cmomeB164
MELO3C008744	Lsi11G008610	Bottle gourd (USVL1VR-Ls)	lsimeB115
MELO3C008744	CsGy2G007380	Cucumber (Gy14) v2	cgybmeB120
MELO3C008744	Carg22651	Silver-seed gourd	carmeB0004
MELO3C008744	CsaV3_2G009610	Cucumber (Chinese Long) v3	cucmeB141

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008744	Silver-seed gourd	carmeB0170
MELO3C008744	Cucurbita maxima (Rimu)	cmameB737
MELO3C008744	Cucurbita moschata (Rifu)	cmomeB725
MELO3C008744	Cucumber (Chinese Long) v2	cumeB133
MELO3C008744	Cucurbita pepo (Zucchini)	cpemeB102
MELO3C008744	Cucurbita pepo (Zucchini)	cpemeB777