MELO3C008729 (gene) Melon (DHL92) v3.5.1

NameMELO3C008729
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSerine hydroxymethyltransferase
Locationchr5 : 18042627 .. 18043049 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTAAGAAAGAAAGGATTGAGGAAGAAGAGTGTGAAGGTTGCAAGAAACACGACGAGGAAGATATGTAAAAGAGGGAGAAGTCAAAGAAACAAGGTGAAAAACAAAGAAGGATCCTCCACTTTTATCGTCGAAACGGACTTTGAGAGGGTCACGAGGAAGGCTCAAGAGAAAAAGGAGAAGGTGGTGTTAGACCTCATTCGCATCAAAATCAAAGCACATGGCGACAAAGCCCTCACAAAAACGAAAAAGGAGGTAAAATTGAGTCGGCGAGGAAAGCTCCTCAATAAAATTGAGAAAATCCCTCTCTCTACGGAGAAGGGCAATGTGAAGAAAACTCAAATCAAAGAGTTGGTTGAGAATTTTGACAGGGAGATGAATGAATTAAGCCCTCTAGATGACGCAATGGTGTTGCCTTAA

mRNA sequence

ATGAAATTAAGAAAGAAAGGATTGAGGAAGAAGAGTGTGAAGGTTGCAAGAAACACGACGAGGAAGATATGTAAAAGAGGGAGAAGTCAAAGAAACAAGGTGAAAAACAAAGAAGGATCCTCCACTTTTATCGTCGAAACGGACTTTGAGAGGGTCACGAGGAAGGCTCAAGAGAAAAAGGAGAAGGTGGTGTTAGACCTCATTCGCATCAAAATCAAAGCACATGGCGACAAAGCCCTCACAAAAACGAAAAAGGAGGTAAAATTGAGTCGGCGAGGAAAGCTCCTCAATAAAATTGAGAAAATCCCTCTCTCTACGGAGAAGGGCAATGTGAAGAAAACTCAAATCAAAGAGTTGGTTGAGAATTTTGACAGGGAGATGAATGAATTAAGCCCTCTAGATGACGCAATGGTGTTGCCTTAA

Coding sequence (CDS)

ATGAAATTAAGAAAGAAAGGATTGAGGAAGAAGAGTGTGAAGGTTGCAAGAAACACGACGAGGAAGATATGTAAAAGAGGGAGAAGTCAAAGAAACAAGGTGAAAAACAAAGAAGGATCCTCCACTTTTATCGTCGAAACGGACTTTGAGAGGGTCACGAGGAAGGCTCAAGAGAAAAAGGAGAAGGTGGTGTTAGACCTCATTCGCATCAAAATCAAAGCACATGGCGACAAAGCCCTCACAAAAACGAAAAAGGAGGTAAAATTGAGTCGGCGAGGAAAGCTCCTCAATAAAATTGAGAAAATCCCTCTCTCTACGGAGAAGGGCAATGTGAAGAAAACTCAAATCAAAGAGTTGGTTGAGAATTTTGACAGGGAGATGAATGAATTAAGCCCTCTAGATGACGCAATGGTGTTGCCTTAA

Protein sequence

MKLRKKGLRKKSVKVARNTTRKICKRGRSQRNKVKNKEGSSTFIVETDFERVTRKAQEKKEKVVLDLIRIKIKAHGDKALTKTKKEVKLSRRGKLLNKIEKIPLSTEKGNVKKTQIKELVENFDREMNELSPLDDAMVLP*
BLAST of MELO3C008729 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-09
Identity = 32/63 (50.79%), Postives = 49/63 (77.78%), Query Frame = 1

Query: 78  KALTKTKKEVKLSRRGKLLNKIEKIPLSTEKGNVKKTQIKELVENFDREMNELSPLDDAM 137
           KAL + KK+VKL  + +LLNKI++ P+ST+KG V+KT  +E+ E F+R++ +LSPL+D +
Sbjct: 6   KALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65

Query: 138 VLP 141
           V P
Sbjct: 66  VKP 68

BLAST of MELO3C008729 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 3.9e-16
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 1

Query: 44  IVETDFERVTRKAQEKKEKVVLDLIRIKIKAHGDKALTKTKKEVKLSRRGKLLNKIEKIP 103
           +V+T+FERV  KAQEK EKV   L++IK+KA    AL + KKE+KL +  +LLNK++K+ 
Sbjct: 1   MVQTEFERVVNKAQEKTEKVRARLLKIKVKAQRAMALAEGKKEIKLRQPEELLNKVDKLA 60

Query: 104 LSTEKGNVKKTQIKELVENFDREMNELSPLDDAMV 139
           LS EKG  K+   +E  + F++E++E SPL+D +V
Sbjct: 61  LSVEKGKEKEKTFEEFYKEFEKEIDEFSPLEDNVV 95

BLAST of MELO3C008729 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1

Query: 46  ETDFERVTRKAQEKKEKVVLDLIRIKIKAHGDKALTKTKKEVKLSRRGKLLNKIEKIPLS 105
           + D E+  +++  +  +    L++IK+KA G KAL + KKE+KL  + +LLNK++K+ LS
Sbjct: 23  QDDIEKDGKESPGEDGESRTGLLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALS 82

Query: 106 TEKGNVKKTQIKELVENFDREMNELSPLDDAMV 139
            EK   +KT  +E  E F +E+ ELSPL+D +V
Sbjct: 83  VEKRKEEKT-FEEHCEEFKKEIEELSPLEDEVV 114

BLAST of MELO3C008729 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-09
Identity = 32/63 (50.79%), Postives = 49/63 (77.78%), Query Frame = 1

Query: 78  KALTKTKKEVKLSRRGKLLNKIEKIPLSTEKGNVKKTQIKELVENFDREMNELSPLDDAM 137
           KAL + KK+VKL  + +LLNKI++ P+ST+KG V+KT  +E+ E F+R++ +LSPL+D +
Sbjct: 6   KALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65

Query: 138 VLP 141
           V P
Sbjct: 66  VKP 68

BLAST of MELO3C008729 vs. NCBI nr
Match: gi|659123312|ref|XP_008461598.1| (PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = 1

Query: 47  TDFERVTRKAQEKKEKVVLDLIRIKIKAHGDKALTKTKKEVKLSRRGKLLNKIEKIPLST 106
           T+F++V RK  +K +K+   L++IK+KA G KAL + KKE  L  R +LLN+++K+ L  
Sbjct: 40  TNFDKVARKPLKKTKKLKKWLLKIKVKAQGVKALAEEKKESMLREREELLNEVDKMALLV 99

Query: 107 EKGNVKKTQIKELVENFDREMNELSPLDDAMV 139
            K   K+       + F++E+ E   L+D +V
Sbjct: 100 NKSKGKEKTTDGYDKEFEKELEEFISLEDGVV 131

BLAST of MELO3C008729 vs. NCBI nr
Match: gi|659109371|ref|XP_008454680.1| (PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-07
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1

Query: 78  KALTKTKKEVKLSRRGKLLNKIEKIPLSTEKGNVKKTQIKELVENFDREMNELSPLDDAM 137
           KAL   KKE KL  + +LLNK+EK+ LSTEKG  KKT  +E  + F+RE+ ELSP  D  
Sbjct: 53  KALADEKKETKLREQEELLNKVEKVALSTEKGKTKKT-TEEYCKEFEREVEELSPFKDEE 112

Query: 138 VL 140
           V+
Sbjct: 113 VV 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K7W9_CUCSA3.2e-0950.79Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659083323|ref|XP_008442290.1|3.9e-1648.42PREDICTED: stress response protein NST1-like [Cucumis melo][more]
gi|659130998|ref|XP_008465464.1|1.6e-0940.86PREDICTED: DNA ligase 1-like [Cucumis melo][more]
gi|700189199|gb|KGN44432.1|4.6e-0950.79hypothetical protein Csa_7G290550 [Cucumis sativus][more]
gi|659123312|ref|XP_008461598.1|1.1e-0736.96PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucum... [more]
gi|659109371|ref|XP_008454680.1|7.4e-0753.23PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008729T1MELO3C008729T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None