MELO3C008725 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008725
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cleavage and polyadenylation specificity factor subunit 1
Location	chr5 : 17917355 .. 17918071 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTCGCCGCTTATAGAATGATGCACTGGCCTACGGGCATCGAGAATTGTGATTCAGCCTTCATCACCCATTCTCGCGCCGACTTCGTCCCCGCCGTCACATCTCACTCTGACGACCTCGACTCCGACTGGCACCCCCGCCGAGATATTGGTCCAGTTCCCAATCTTGTAGTCACCGCCGGCAATGTCCTCGAGGTTTATGTTGTTAGGGTTCTAGAGGAAGGTGGGAGAGAATCAAGAAGCTCAGGAGAAGTCAGACGCGGTGGCATTATGGATGGTGTCTCTGGGGCCTCACTCGAGCTTGTTTGCCACTACAGGTATGTTCCATGTTTTGTGAATGTATACCCAATCATTTCAATCATATTTCTAGCTTGTTAGAACATACATGCATCATGGAACAGCTTTTTGCTAGCTTCTCAATTTGGGTCTTTTTGTTGCGTCTCGTTTTTACTTCTCATTTATGAGCGATAACTTTGCTTATAATAGAATACAAAAGTTACCGTATACTGGGTAAGCACTTGTTCTTTTTGTTTAGTGATAATTTACTATTCTTCCGTTTTGTTGCAGGTTGCATGGTAATGTCGAGTCCATGGCAATTTTGTCCAGTAGAGGAGGTGATGGTTCCAAGAAGAGAGATTCGATCATATTAGTCTTTCAAGAAGCAAAAATTTCTGTGCTGGAGTTTGATGATTCTATCCATAGTCTCCGTACAAG

mRNA sequence

ATGAGTTTCGCCGCTTATAGAATGATGCACTGGCCTACGGGCATCGAGAATTGTGATTCAGCCTTCATCACCCATTCTCGCGCCGACTTCGTCCCCGCCGTCACATCTCACTCTGACGACCTCGACTCCGACTGGCACCCCCGCCGAGATATTGGTCCAGTTCCCAATCTTGTAGTCACCGCCGGCAATGTCCTCGAGGTTTATGTTGTTAGGGTTCTAGAGGAAGGTGGGAGAGAATCAAGAAGCTCAGGAGAAGTCAGACGCGGTGGCATTATGGATGGTGTCTCTGGGGCCTCACTCGAGCTTGTTTGCCACTACAGGTTGCATGGTAATGTCGAGTCCATGGCAATTTTGTCCAGTAGAGGAGGTGATGGTTCCAAGAAGAGAGATTCGATCATATTAGTCTTTCAAGAAGCAAAAATTTCTGTGCTGGAGTTTGATGATTCTATCCATAGTCTCCGTACAAG

Coding sequence (CDS)

ATGAGTTTCGCCGCTTATAGAATGATGCACTGGCCTACGGGCATCGAGAATTGTGATTCAGCCTTCATCACCCATTCTCGCGCCGACTTCGTCCCCGCCGTCACATCTCACTCTGACGACCTCGACTCCGACTGGCACCCCCGCCGAGATATTGGTCCAGTTCCCAATCTTGTAGTCACCGCCGGCAATGTCCTCGAGGTTTATGTTGTTAGGGTTCTAGAGGAAGGTGGGAGAGAATCAAGAAGCTCAGGAGAAGTCAGACGCGGTGGCATTATGGATGGTGTCTCTGGGGCCTCACTCGAGCTTGTTTGCCACTACAGGTTGCATGGTAATGTCGAGTCCATGGCAATTTTGTCCAGTAGAGGAGGTGATGGTTCCAAGAAGAGAGATTCGATCATATTAGTCTTTCAAGAAGCAAAAATTTCTGTGCTGGAGTTTGATGATTCTATCCATAGTCTCCGTACAAG

Protein sequence

MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVTAGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT

Homology

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BLAST of MELO3C008725 vs. Swiss-Prot
Match: CPSF1_ARATH (Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 9.7e-53
Identity = 103/159 (64.78%), Postives = 127/159 (79.87%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADF---VPAVTSHSDDLDSDW-HPRRDIGPVPN 60
           MSFAAY+MMHWPTG+ENC S +ITHS +D    +P V+ H DD++++W +P+R IGP+PN
Sbjct: 1   MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVH-DDIEAEWPNPKRGIGPLPN 60

Query: 61  LVVTAGNVLEVYVVRVLEEGG-RESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESM 120
           +V+TA N+LEVY+VR  EEG  +E R+    +RGG+MDGV G SLELVCHYRLHGNVES+
Sbjct: 61  VVITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESI 120

Query: 121 AILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLR 155
           A+L   GG+ SK RDSIIL F++AKISVLEFDDSIHSLR
Sbjct: 121 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLR 158

[Close]

BLAST of MELO3C008725 vs. Swiss-Prot
Match: CPSF1_ORYSJ (Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-36
Identity = 88/168 (52.38%), Postives = 113/168 (67.26%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRAD---FVPAVT---SHSDDLDSDW---HPRRDI 60
           MS+AAY+MMHWPTG+++C + F+THS +D   F  A T       D+DS      PRR +
Sbjct: 1   MSYAAYKMMHWPTGVDHCAAGFVTHSPSDAAAFFTAATVGPGPEGDIDSAAAASRPRR-L 60

Query: 61  GPVPNLVVTAGNVLEVYVVRV---LEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRL 120
           GP PNLVV A NVLEVY VR     E+GG  ++ S     G ++DG+SGA LELVC+YRL
Sbjct: 61  GPSPNLVVAAANVLEVYAVRAETAAEDGGGGTQPSSS--SGAVLDGISGARLELVCYYRL 120

Query: 121 HGNVESMAILSSRGGDGSK-KRDSIILVFQEAKISVLEFDDSIHSLRT 156
           HGN+ESM +LS    DG++ +R +I L F++AKI+ LEFDD+IH LRT
Sbjct: 121 HGNIESMTVLS----DGAENRRATIALAFKDAKITCLEFDDAIHGLRT 161

[Close]

BLAST of MELO3C008725 vs. Swiss-Prot
Match: CPSF1_BOVIN (Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.9e-06
Identity = 43/154 (27.92%), Postives = 65/154 (42.21%), Query Frame = 1


Query: 3   FAAYRMMHWPTGIE-NCDSAFITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVTA 62
           +A Y+  H PTG+E +    F  +S  + V A TS                         
Sbjct: 2   YAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTS------------------------- 61

Query: 63  GNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSSR 122
               ++YV R+  +   E+ +  +    G         LELV  +   GNV SMA +   
Sbjct: 62  ----QLYVYRLNRDS--EAPTKNDRSTDGKAHREHREKLELVASFSFFGNVMSMASVQLA 120

Query: 123 GGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           G     KRD+++L F++AK+SV+E+D   H L+T
Sbjct: 122 GA----KRDALLLSFKDAKLSVVEYDPGTHDLKT 120

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BLAST of MELO3C008725 vs. Swiss-Prot
Match: CPSF1_MOUSE (Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cpsf1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.9e-06
Identity = 42/154 (27.27%), Postives = 64/154 (41.56%), Query Frame = 1


Query: 3   FAAYRMMHWPTGIE-NCDSAFITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVTA 62
           +A Y+  H PTG+E      F  +S  + V A TS                         
Sbjct: 2   YAVYKQAHPPTGLEFTMYCNFFNNSERNLVVAGTS------------------------- 61

Query: 63  GNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSSR 122
               ++YV R+  +    +++ G        +      LELV  +   GNV SMA +   
Sbjct: 62  ----QLYVYRLNRDAEALTKNDGSTEGKAHRE-----KLELVASFSFFGNVMSMASVQLA 117

Query: 123 GGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           G     KRD+++L F++AK+SV+E+D   H L+T
Sbjct: 122 GA----KRDALLLSFKDAKLSVVEYDPGTHDLKT 117

[Close]

BLAST of MELO3C008725 vs. Swiss-Prot
Match: CPSF1_DROME (Cleavage and polyadenylation specificity factor subunit 1 OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.9e-06
Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 1


Query: 56  NLVVTAGNVLEVY-VVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVES 115
           NLVV   NVL+VY +   +E   R+  +  E+R    M       LE +  Y L+GNV S
Sbjct: 29  NLVVAGANVLKVYRIAPNVEASQRQKLNPSEMRLAPKM------RLECLATYTLYGNVMS 88

Query: 116 MAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           +  +S  G      RD++++ F++AK+SVL+ D    +L+T
Sbjct: 89  LQCVSLAGA----MRDALLISFKDAKLSVLQHDPDTFALKT 119

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BLAST of MELO3C008725 vs. TrEMBL
Match: A0A0A0LKI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074280 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.0e-81
Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT 60
           MSFAAYRMMHWPTGIENCDSA+ITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT
Sbjct: 1   MSFAAYRMMHWPTGIENCDSAYITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT 60

Query: 61  AGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120
           AGNVLEVYVVRVLEEGGRES+SSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS
Sbjct: 61  AGNVLEVYVVRVLEEGGRESKSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120

Query: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           RGGDGSKKRDSIILVFQEAKISVLEFDDS HSLRT
Sbjct: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSTHSLRT 155

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BLAST of MELO3C008725 vs. TrEMBL
Match: A0A067JEX3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26213 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-60
Identity = 114/156 (73.08%), Postives = 136/156 (87.18%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTS-HSDDLDSDWHPRRDIGPVPNLVV 60
           MS+AAY+MMHW TGIENC S F+TH RADFVP + S  +D+++S+W  +R IGPVPNL+V
Sbjct: 1   MSYAAYKMMHWSTGIENCASGFLTHCRADFVPQIPSVQTDEVESEWPAKRGIGPVPNLIV 60

Query: 61  TAGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILS 120
           TAGNVLEVYVVRV EEG RESR+S E +RGG+MDGVSGASLELVCHYRLHGN+ESMA+L 
Sbjct: 61  TAGNVLEVYVVRVQEEGSRESRNSRESKRGGVMDGVSGASLELVCHYRLHGNIESMAVLP 120

Query: 121 SRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
             GGDGS++RDSIIL F+++K+SVLEFDDSIH LRT
Sbjct: 121 IEGGDGSRRRDSIILSFKDSKMSVLEFDDSIHGLRT 156

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BLAST of MELO3C008725 vs. TrEMBL
Match: A0A061G7F2_THECC (Cleavage and polyadenylation specificity factor 160 isoform 1 OS=Theobroma cacao GN=TCM_014995 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.4e-60
Identity = 113/156 (72.44%), Postives = 136/156 (87.18%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVT-SHSDDLDSDWHPRRDIGPVPNLVV 60
           MS+AAY+MMHWPTGIENC S F+TH RADF P +  + ++DL+S+W  RR IGPVPNL+V
Sbjct: 1   MSYAAYKMMHWPTGIENCASGFVTHCRADFTPQIPLNQTEDLESEWPARRGIGPVPNLIV 60

Query: 61  TAGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILS 120
           TA N+LE+YVVRV EEG RE+R+S EV+RGG++DGVSG SLELVC+YRLHGNVESMA+LS
Sbjct: 61  TAANLLEIYVVRVQEEGRREARNSTEVKRGGVLDGVSGVSLELVCNYRLHGNVESMAVLS 120

Query: 121 SRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
             GGDGS++RDSIIL F++AKISVLEFDDSIH LRT
Sbjct: 121 IGGGDGSRRRDSIILAFKDAKISVLEFDDSIHGLRT 156

[Close]

BLAST of MELO3C008725 vs. TrEMBL
Match: B9R9N0_RICCO (Cleavage and polyadenylation specificity factor cpsf, putative OS=Ricinus communis GN=RCOM_1498840 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.7e-60
Identity = 115/157 (73.25%), Postives = 137/157 (87.26%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTS-HSDDLDSDWHP-RRDIGPVPNLV 60
           MS+AAY+M+HWPTGIE+C S +ITHSRADFVP +    +D+LDS+W P +R IGP+PNL+
Sbjct: 1   MSYAAYKMLHWPTGIESCASGYITHSRADFVPQIPPIQTDNLDSEWPPSKRGIGPMPNLI 60

Query: 61  VTAGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAIL 120
           VTAG+VLEVYVVRV E+G RESRSS E +RGG+MDGVSGASLELVCHYRLHGNVESM +L
Sbjct: 61  VTAGSVLEVYVVRVQEDGSRESRSSRETKRGGLMDGVSGASLELVCHYRLHGNVESMVVL 120

Query: 121 SSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
            + GGD S++RDSIIL F++AKISVLEFDDSIH LRT
Sbjct: 121 PTEGGDSSRRRDSIILAFKDAKISVLEFDDSIHGLRT 157

[Close]

BLAST of MELO3C008725 vs. TrEMBL
Match: W9SC01_9ROSA (Cleavage and polyadenylation specificity factor subunit 1 OS=Morus notabilis GN=L484_012973 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.2e-59
Identity = 119/158 (75.32%), Postives = 136/158 (86.08%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTS-HSDDLDSDWHP-RRDIGPVPNLV 60
           MSFAAY+MMHWPTGIENC + F++HSRADFVP +    SDDLDSDW   RR+ GPVPNLV
Sbjct: 1   MSFAAYKMMHWPTGIENCAAGFVSHSRADFVPRIPPIQSDDLDSDWPAGRRETGPVPNLV 60

Query: 61  VTAGNVLEVYVVRVLEEGG-RESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAI 120
           VTAGNVLEVYVVR+ EE   R SR+  E RRGG+MDG+SGASLELVCHYRLHGNV+++A+
Sbjct: 61  VTAGNVLEVYVVRLQEEDDTRSSRAPAESRRGGLMDGLSGASLELVCHYRLHGNVQTIAV 120

Query: 121 LSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           LSS GGDGS++RDSIIL FQ+AKISVLEFDDSIH LRT
Sbjct: 121 LSSGGGDGSRRRDSIILSFQDAKISVLEFDDSIHGLRT 158

[Close]

BLAST of MELO3C008725 vs. TAIR10
Match: AT5G51660.1 (AT5G51660.1 cleavage and polyadenylation specificity factor 160)

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-54
Identity = 103/159 (64.78%), Postives = 127/159 (79.87%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADF---VPAVTSHSDDLDSDW-HPRRDIGPVPN 60
           MSFAAY+MMHWPTG+ENC S +ITHS +D    +P V+ H DD++++W +P+R IGP+PN
Sbjct: 1   MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVH-DDIEAEWPNPKRGIGPLPN 60

Query: 61  LVVTAGNVLEVYVVRVLEEGG-RESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESM 120
           +V+TA N+LEVY+VR  EEG  +E R+    +RGG+MDGV G SLELVCHYRLHGNVES+
Sbjct: 61  VVITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESI 120

Query: 121 AILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLR 155
           A+L   GG+ SK RDSIIL F++AKISVLEFDDSIHSLR
Sbjct: 121 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLR 158

[Close]

BLAST of MELO3C008725 vs. NCBI nr
Match: gi|659082456|ref|XP_008441850.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 313.9 bits (803), Expect = 1.5e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT 60
           MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT
Sbjct: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT 60

Query: 61  AGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120
           AGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS
Sbjct: 61  AGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120

Query: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT
Sbjct: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 155

[Close]

BLAST of MELO3C008725 vs. NCBI nr
Match: gi|778667872|ref|XP_011648998.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 2.9e-81
Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT 60
           MSFAAYRMMHWPTGIENCDSA+ITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT
Sbjct: 1   MSFAAYRMMHWPTGIENCDSAYITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT 60

Query: 61  AGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120
           AGNVLEVYVVRVLEEGGRES+SSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS
Sbjct: 61  AGNVLEVYVVRVLEEGGRESKSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120

Query: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           RGGDGSKKRDSIILVFQEAKISVLEFDDS HSLRT
Sbjct: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSTHSLRT 155

[Close]

BLAST of MELO3C008725 vs. NCBI nr
Match: gi|1009122186|ref|XP_015877866.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Ziziphus jujuba])

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 119/157 (75.80%), Postives = 137/157 (87.26%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTS-HSDDLDSDWHP-RRDIGPVPNLV 60
           MSFAA++MMHWPTGIENC S FITHSRADFVP +    +DDLDSDW   RR+IGP+PNLV
Sbjct: 1   MSFAAFKMMHWPTGIENCASGFITHSRADFVPRIPPIQNDDLDSDWSASRREIGPIPNLV 60

Query: 61  VTAGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAIL 120
           VTAGNVLEVYVVR+ EE  R SR+SGE RRGG+MDG+SGASLELVCHYRLHGNVE+MA+L
Sbjct: 61  VTAGNVLEVYVVRIQEESNRSSRASGESRRGGVMDGLSGASLELVCHYRLHGNVETMAVL 120

Query: 121 SSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           S+ GG+ S++RDSIIL FQ+AKISVL+FDDS H LRT
Sbjct: 121 STGGGESSRRRDSIILSFQDAKISVLDFDDSTHGLRT 157

[Close]

BLAST of MELO3C008725 vs. NCBI nr
Match: gi|658016719|ref|XP_008343710.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like isoform X1 [Malus domestica])

HSP 1 Score: 242.3 bits (617), Expect = 5.7e-61
Identity = 120/158 (75.95%), Postives = 139/158 (87.97%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTS-HSDDLDSDWHP-RRDIGPVPNLV 60
           MSFAAY+MMHWPTGIENC S FI+HSRADFVP +    +DDL+SDW P RR+IGP+P+LV
Sbjct: 1   MSFAAYKMMHWPTGIENCASGFISHSRADFVPRMPQIQTDDLESDWPPTRREIGPIPDLV 60

Query: 61  VTAGNVLEVYVVRVLEE-GGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAI 120
           VTAGNVLEVYVVRV EE G R SR+SGE +RGG+MDGVSGASLELVCHYR+HGNV +MA+
Sbjct: 61  VTAGNVLEVYVVRVQEEDGARGSRASGEPKRGGLMDGVSGASLELVCHYRMHGNVVTMAV 120

Query: 121 LSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           LS  GGDGS++RDSI+L F++AKISVLEFDDSIH LRT
Sbjct: 121 LSGGGGDGSRRRDSIVLTFEDAKISVLEFDDSIHGLRT 158

[Close]

BLAST of MELO3C008725 vs. NCBI nr
Match: gi|694398757|ref|XP_009374536.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 242.3 bits (617), Expect = 5.7e-61
Identity = 120/158 (75.95%), Postives = 139/158 (87.97%), Query Frame = 1


Query: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTS-HSDDLDSDWHP-RRDIGPVPNLV 60
           MSFAAY+MMHWPTGIENC S FI+HSRADFVP +    +DDL+SDW P RR+IGP+P+LV
Sbjct: 1   MSFAAYKMMHWPTGIENCASGFISHSRADFVPRMPQVQTDDLESDWPPTRREIGPIPDLV 60

Query: 61  VTAGNVLEVYVVRVLEE-GGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAI 120
           VTAGNVLEVYVVRV EE G R SR+SGE +RGG+MDGVSGASLELVCHYR+HGNV +MA+
Sbjct: 61  VTAGNVLEVYVVRVQEEEGARGSRASGEPKRGGLMDGVSGASLELVCHYRMHGNVVTMAV 120

Query: 121 LSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT 156
           LS  GGDGS++RDSI+L F++AKISVLEFDDSIH LRT
Sbjct: 121 LSGGGGDGSRRRDSIVLTFEDAKISVLEFDDSIHGLRT 158

The following BLAST results are available for this feature:

BLAST of MELO3C008725 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CPSF1_ARATH	9.7e-53	64.78	Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thalian...	[more]
CPSF1_ORYSJ	2.2e-36	52.38	Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sati...	[more]
CPSF1_BOVIN	8.9e-06	27.92	Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1...	[more]
CPSF1_MOUSE	8.9e-06	27.27	Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cps...	[more]
CPSF1_DROME	8.9e-06	34.65	Cleavage and polyadenylation specificity factor subunit 1 OS=Drosophila melanoga...	[more]

BLAST of MELO3C008725 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKI9_CUCSA	2.0e-81	98.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074280 PE=4 SV=1	[more]
A0A067JEX3_JATCU	2.0e-60	73.08	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26213 PE=4 SV=1	[more]
A0A061G7F2_THECC	4.4e-60	72.44	Cleavage and polyadenylation specificity factor 160 isoform 1 OS=Theobroma cacao...	[more]
B9R9N0_RICCO	5.7e-60	73.25	Cleavage and polyadenylation specificity factor cpsf, putative OS=Ricinus commun...	[more]
W9SC01_9ROSA	2.2e-59	75.32	Cleavage and polyadenylation specificity factor subunit 1 OS=Morus notabilis GN=...	[more]

BLAST of MELO3C008725 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51660.1	5.5e-54	64.78	cleavage and polyadenylation specificity factor 160	[more]

BLAST of MELO3C008725 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082456\|ref\|XP_008441850.1\|	1.5e-82	100.00	PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 ...	[more]
gi\|778667872\|ref\|XP_011648998.1\|	2.9e-81	98.06	PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Cucumis sa...	[more]
gi\|1009122186\|ref\|XP_015877866.1\|	1.5e-61	75.80	PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Ziziphus j...	[more]
gi\|658016719\|ref\|XP_008343710.1\|	5.7e-61	75.95	PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like isofor...	[more]
gi\|694398757\|ref\|XP_009374536.1\|	5.7e-61	75.95	PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008725T1	MELO3C008725T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10644	DNA REPAIR/RNA PROCESSING CPSF FAMILY	coord: 1..29 score: 7.3E-37coord: 56..69 score: 7.3E-37coord: 92..155 score: 7.3
None	No IPR available	PANTHER	PTHR10644:SF2	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1	coord: 56..69 score: 7.3E-37coord: 92..155 score: 7.3E-37coord: 1..29 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008725	Csa2G074280	Cucumber (Chinese Long) v2	cumeB133

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008725	Silver-seed gourd	carmeB0170
MELO3C008725	Silver-seed gourd	carmeB0712
MELO3C008725	Cucumber (Chinese Long) v3	cucmeB141
MELO3C008725	Watermelon (97103) v2	mewmbB369
MELO3C008725	Wax gourd	mewgoB456
MELO3C008725	Wax gourd	mewgoB468
MELO3C008725	Cucumber (Gy14) v1	cgymeB320
MELO3C008725	Cucurbita maxima (Rimu)	cmameB175
MELO3C008725	Cucurbita maxima (Rimu)	cmameB737
MELO3C008725	Cucurbita moschata (Rifu)	cmomeB164
MELO3C008725	Cucurbita moschata (Rifu)	cmomeB725
MELO3C008725	Wild cucumber (PI 183967)	cpimeB139
MELO3C008725	Watermelon (Charleston Gray)	mewcgB367
MELO3C008725	Watermelon (97103) v1	mewmB426
MELO3C008725	Cucurbita pepo (Zucchini)	cpemeB102
MELO3C008725	Cucurbita pepo (Zucchini)	cpemeB777
MELO3C008725	Bottle gourd (USVL1VR-Ls)	lsimeB115
MELO3C008725	Cucumber (Gy14) v2	cgybmeB120