MELO3C008718 (gene) Melon (DHL92) v3.5.1

NameMELO3C008718
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein
Locationchr5 : 17799412 .. 17799579 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGAGGACGTTGACGACATGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACTTAGCCGAATTGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGACGACATGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACTTAGCCGAATTGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGACGACATGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACTTAGCCGAATTGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA*
BLAST of MELO3C008718 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLR 54
           MTYC DV+D DEGDSTYATTTASEDI YIETTNEWSQWRDDLA  MFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C008718 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-08
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFT 49
           MT  +  D++DE DST+AT TA++DIHYIET+NEWSQWRD+LAE + T
Sbjct: 311 MTNFDIEDNIDEVDSTHAT-TAADDIHYIETSNEWSQWRDNLAEEIMT 357

BLAST of MELO3C008718 vs. TrEMBL
Match: A0A0A0M0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-06
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1

Query: 1  MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRN 55
          +T  + + D+DE D  YATT  + +I+Y E +N+WSQWRDDL E MF  WQL N
Sbjct: 14 ITNVKILKDVDEVDLNYATTEGN-NINYNEASNKWSQWRDDLVEAMFNGWQLCN 66

BLAST of MELO3C008718 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLR 54
           MTYC DV+D DEGDSTYATTTASEDI YIETTNEWSQWRDDLA  MFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C008718 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-19
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
           MTYC+DVDD+DEGD  YATTT  E+IHYIE TNEWSQWRD LAE MFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of MELO3C008718 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-13
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRN 55
           MT  +  D++DE DST+AT TA++DIHYIET+NEWSQWRDDLAE MFTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHAT-TAADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

BLAST of MELO3C008718 vs. NCBI nr
Match: gi|659112451|ref|XP_008456228.1| (PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-12
Identity = 35/54 (64.81%), Postives = 48/54 (88.89%), Query Frame = 1

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRN 55
           MT  + VDD+DE DST+AT +A++DIHYIET+NEW++WRDDLA+ MF++W+LRN
Sbjct: 152 MTTFDIVDDIDEVDSTHAT-SAADDIHYIETSNEWTRWRDDLAKEMFSEWELRN 204

BLAST of MELO3C008718 vs. NCBI nr
Match: gi|659114872|ref|XP_008457266.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-12
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRN 55
           MT  +  D++DE DST+AT  A++DIHYIET+NEWSQWRDDLAE MF++W+LRN
Sbjct: 251 MTNFDIQDNIDEVDSTHATI-ATDDIHYIETSNEWSQWRDDLAEEMFSEWELRN 303

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME1.0e-1986.79Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME5.4e-0864.58Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M0G4_CUCSA2.3e-0651.85Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|1.5e-1986.79retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659099182|ref|XP_008450472.1|2.0e-1981.82PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|1.6e-1372.22PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
gi|659112451|ref|XP_008456228.1|3.9e-1264.81PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo][more]
gi|659114872|ref|XP_008457266.1|6.7e-1266.67PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008718T1MELO3C008718T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None