MELO3C008715 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008715
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase subunit beta'
Location	chr5 : 17776698 .. 17776865 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTTTCGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTACGCGACGACCATCGCTTCAGAAGACATTTACTACATTGAGACAACAAACGAGTGGTCTCAATGGCGCGACGACCTAGCCAAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATCTTTCGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTACGCGACGACCATCGCTTCAGAAGACATTTACTACATTGAGACAACAAACGAGTGGTCTCAATGGCGCGACGACCTAGCCAAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATCTTTCGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTACGCGACGACCATCGCTTCAGAAGACATTTACTACATTGAGACAACAAACGAGTGGTCTCAATGGCGCGACGACCTAGCCAAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA*

Homology

[Close]

BLAST of MELO3C008715 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-17
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 1


Query: 1   MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLR 54
           MT   DV+D DEGDSTYATT ASEDI YIETTNEWSQWRDDLA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]

BLAST of MELO3C008715 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-08
Identity = 30/48 (62.50%), Postives = 42/48 (87.50%), Query Frame = 1


Query: 1   MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFT 49
           MT+F+  D++DE DST+ATT A++DI+YIET+NEWSQWRD+LA+ + T
Sbjct: 311 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDNLAEEIMT 357

[Close]

BLAST of MELO3C008715 vs. TrEMBL
Match: A0A0A0M0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-06
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1


Query: 1  MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRN 55
          +T+ + + DVDE D  YATT    +I Y E +N+WSQWRDDL ++MF  WQL N
Sbjct: 14 ITNVKILKDVDEVDLNYATT-EGNNINYNEASNKWSQWRDDLVEAMFNGWQLCN 66

[Close]

BLAST of MELO3C008715 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-17
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 1


Query: 1   MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLR 54
           MT   DV+D DEGDSTYATT ASEDI YIETTNEWSQWRDDLA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]

BLAST of MELO3C008715 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-16
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 1


Query: 1   MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRNA 56
           MT  +DVDDVDEGD  YATT   E+I+YIE TNEWSQWRD LA+SMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

[Close]

BLAST of MELO3C008715 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 1


Query: 1   MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRN 55
           MT+F+  D++DE DST+ATT A++DI+YIET+NEWSQWRDDLA+ MFTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

[Close]

BLAST of MELO3C008715 vs. NCBI nr
Match: gi|659112451|ref|XP_008456228.1| (PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 9.4e-14
Identity = 36/54 (66.67%), Postives = 50/54 (92.59%), Query Frame = 1


Query: 1   MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRN 55
           MT+F+ VDD+DE DST+AT+ A++DI+YIET+NEW++WRDDLAK MF++W+LRN
Sbjct: 152 MTTFDIVDDIDEVDSTHATS-AADDIHYIETSNEWTRWRDDLAKEMFSEWELRN 204

[Close]

BLAST of MELO3C008715 vs. NCBI nr
Match: gi|659114872|ref|XP_008457266.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-13
Identity = 36/54 (66.67%), Postives = 49/54 (90.74%), Query Frame = 1


Query: 1   MTSFEDVDDVDEGDSTYATTIASEDIYYIETTNEWSQWRDDLAKSMFTDWQLRN 55
           MT+F+  D++DE DST+AT IA++DI+YIET+NEWSQWRDDLA+ MF++W+LRN
Sbjct: 251 MTNFDIQDNIDEVDSTHAT-IATDDIHYIETSNEWSQWRDDLAEEMFSEWELRN 303

The following BLAST results are available for this feature:

BLAST of MELO3C008715 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	2.8e-17	83.02	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	1.1e-08	62.50	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0M0G4_CUCSA	2.3e-06	51.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1	[more]

BLAST of MELO3C008715 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135889\|gb\|ADN33754.1\|	4.1e-17	83.02	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659099182\|ref\|XP_008450472.1\|	2.6e-16	76.36	PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo]	[more]
gi\|659121362\|ref\|XP_008460622.1\|	3.2e-14	70.37	PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo]	[more]
gi\|659112451\|ref\|XP_008456228.1\|	9.4e-14	66.67	PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo]	[more]
gi\|659114872\|ref\|XP_008457266.1\|	3.6e-13	66.67	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008715T1	MELO3C008715T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008715	Cucumber (Gy14) v2	cgybmeB120
MELO3C008715	Silver-seed gourd	carmeB0170
MELO3C008715	Silver-seed gourd	carmeB0712
MELO3C008715	Cucumber (Chinese Long) v3	cucmeB141
MELO3C008715	Watermelon (97103) v2	mewmbB369
MELO3C008715	Wax gourd	mewgoB456
MELO3C008715	Wax gourd	mewgoB468
MELO3C008715	Cucumber (Gy14) v1	cgymeB320
MELO3C008715	Cucurbita maxima (Rimu)	cmameB175
MELO3C008715	Cucurbita maxima (Rimu)	cmameB737
MELO3C008715	Cucurbita moschata (Rifu)	cmomeB164
MELO3C008715	Cucurbita moschata (Rifu)	cmomeB725
MELO3C008715	Wild cucumber (PI 183967)	cpimeB139
MELO3C008715	Cucumber (Chinese Long) v2	cumeB133
MELO3C008715	Watermelon (Charleston Gray)	mewcgB367
MELO3C008715	Watermelon (97103) v1	mewmB426
MELO3C008715	Cucurbita pepo (Zucchini)	cpemeB102
MELO3C008715	Cucurbita pepo (Zucchini)	cpemeB777
MELO3C008715	Bottle gourd (USVL1VR-Ls)	lsimeB115