MELO3C008712 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008712
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPentatricopeptide repeat (PPR) superfamily protein
Locationchr5 : 17704936 .. 17705154 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTGCAGATAGATATTCGCCTGCCTAATGGATTAAAAATGATTTTGGCCCTGCAACTGAAGAAGGGCCTCGCTCGCAATGAACCGATATTCATGGCCATGATGCTTGGGTCGTTGGAAATCCCGAAAGAGATGATTCCCAAAGATATTATGTATGGCTTAGAGAATTATAGTGTTGTGATGCCTGATAGTTTACCCAAATCTCTACCACCCTGA

mRNA sequence

ATGGTTGTGCAGATAGATATTCGCCTGCCTAATGGATTAAAAATGATTTTGGCCCTGCAACTGAAGAAGGGCCTCGCTCGCAATGAACCGATATTCATGGCCATGATGCTTGGGTCGTTGGAAATCCCGAAAGAGATGATTCCCAAAGATATTATGTATGGCTTAGAGAATTATAGTGTTGTGATGCCTGATAGTTTACCCAAATCTCTACCACCCTGA

Coding sequence (CDS)

ATGGTTGTGCAGATAGATATTCGCCTGCCTAATGGATTAAAAATGATTTTGGCCCTGCAACTGAAGAAGGGCCTCGCTCGCAATGAACCGATATTCATGGCCATGATGCTTGGGTCGTTGGAAATCCCGAAAGAGATGATTCCCAAAGATATTATGTATGGCTTAGAGAATTATAGTGTTGTGATGCCTGATAGTTTACCCAAATCTCTACCACCCTGA

Protein sequence

MVVQIDIRLPNGLKMILALQLKKGLARNEPIFMAMMLGSLEIPKEMIPKDIMYGLENYSVVMPDSLPKSLPP*
Homology
[Close]
BLAST of MELO3C008712 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-14
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 2   VVQIDIRLPNGLKMILALQLKKGLARNEPIFMAMMLGSLEIPKEMIPKDIMYGLENYSVV 61
           VVQ D+R P+GLKMI A+QLKKGL+R+EP FMA+ L S E   E +P +I+  LE Y  V
Sbjct: 36  VVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPTEIVRVLEKYRDV 95

Query: 62  MPDSLPKSLPP 73
           MPDS PKSLPP
Sbjct: 96  MPDSFPKSLPP 106

[Close]
BLAST of MELO3C008712 vs. NCBI nr
Match: gi|659121588|ref|XP_008460733.1| (PREDICTED: uncharacterized protein LOC103499495, partial [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 2   VVQIDIRLPNGLKMILALQLKKGLARNEPIFMAMMLGSLEIPKEMIPKDIMYGLENYSVV 61
           VVQ DIR PNG KMI  +QL +  A+ EP ++ ++LG+LE P+E +PKD +   E    V
Sbjct: 215 VVQADIRQPNGFKMISVMQLDESRAQEEPPYVEILLGALEKPRETVPKDTLCVPEKCHGV 274

Query: 62  MPDSLPKS 70
           MP S PKS
Sbjct: 275 MPSSWPKS 282

The following BLAST results are available for this feature:
BLAST of MELO3C008712 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114583|ref|XP_008457127.1|2.5e-1461.97PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me... [more]
gi|659121588|ref|XP_008460733.1|1.5e-0850.00PREDICTED: uncharacterized protein LOC103499495, partial [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008712T1MELO3C008712T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008712Silver-seed gourdcarmeB0170
MELO3C008712Silver-seed gourdcarmeB0712
MELO3C008712Cucumber (Chinese Long) v3cucmeB141
MELO3C008712Watermelon (97103) v2mewmbB369
MELO3C008712Wax gourdmewgoB456
MELO3C008712Wax gourdmewgoB468
MELO3C008712Cucumber (Gy14) v1cgymeB320
MELO3C008712Cucurbita maxima (Rimu)cmameB175
MELO3C008712Cucurbita maxima (Rimu)cmameB737
MELO3C008712Cucurbita moschata (Rifu)cmomeB164
MELO3C008712Cucurbita moschata (Rifu)cmomeB725
MELO3C008712Wild cucumber (PI 183967)cpimeB139
MELO3C008712Cucumber (Chinese Long) v2cumeB133
MELO3C008712Watermelon (Charleston Gray)mewcgB367
MELO3C008712Watermelon (97103) v1mewmB426
MELO3C008712Cucurbita pepo (Zucchini)cpemeB102
MELO3C008712Cucurbita pepo (Zucchini)cpemeB777
MELO3C008712Bottle gourd (USVL1VR-Ls)lsimeB115
MELO3C008712Cucumber (Gy14) v2cgybmeB120