MELO3C008711 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008711
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA-binding 42
Locationchr5 : 17669304 .. 17669988 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGTCCTTCCTCGGCTCCTTCATCAGCTTCTTCCTCTTCAGCTTCCCAATTTACGTATTCAAACGGTTCTTACTTCCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCAGCGCCCGCACCCCCAGTATCCCTCTCCCTATGTCGCTCCTCCAGGTCCTCCGCCAGTTCCCCTCCCCGTCGCACCTGTTTATCCTGCTCCCGCTCCGCCTCCGGCGGTCTATACTCTCCCTCAGTACCAGCAGGTACCAAATATACGACTTGAATCTTTACTTCGAAGTTCTGCTTTTCATTTATTTTGGATAGGGTTTGTGGGGAATTGTTATGGAGGACGTTTCTGATGGATAATGGGTGTGTTTTTTTTTTTTTTTTTTTAATTTCAATTTATGGGTTTAGCATGGTTGTATTTGTTTTTTCTTTTTCCTATTTTATTTATTTATTATGAACAGGCCCAACAATTGTTTCAAAGGGATGCTCAAACCATAACACCGGAAGCTCTTGAGAGTGTTAAAGCTGCTCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCTTGGGAGGATCCAACTCTTGCTGAGTGGCCTGAAAGTATGCATTTTCTGCTTTCTTTGATTTCACGTGTTTGCAATCATTGGACTTGCTGA

mRNA sequence

ATGGCGGGTCCTTCCTCGGCTCCTTCATCAGCTTCTTCCTCTTCAGCTTCCCAATTTACGTATTCAAACGGTCCTCCGCCAGTTCCCCTCCCCGTCGCACCTGTTTATCCTGCTCCCGCTCCGCCTCCGGCGGTCTATACTCTCCCTCAGTACCAGCAGGCCCAACAATTGTTTCAAAGGGATGCTCAAACCATAACACCGGAAGCTCTTGAGAGTGTTAAAGCTGCTCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCTTGGGAGGATCCAACTCTTGCTGAGTGGCCTGAAAGTATGCATTTTCTGCTTTCTTTGATTTCACGTGTTTGCAATCATTGGACTTGCTGA

Coding sequence (CDS)

ATGGCGGGTCCTTCCTCGGCTCCTTCATCAGCTTCTTCCTCTTCAGCTTCCCAATTTACGTATTCAAACGGTCCTCCGCCAGTTCCCCTCCCCGTCGCACCTGTTTATCCTGCTCCCGCTCCGCCTCCGGCGGTCTATACTCTCCCTCAGTACCAGCAGGCCCAACAATTGTTTCAAAGGGATGCTCAAACCATAACACCGGAAGCTCTTGAGAGTGTTAAAGCTGCTCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCTTGGGAGGATCCAACTCTTGCTGAGTGGCCTGAAAGTATGCATTTTCTGCTTTCTTTGATTTCACGTGTTTGCAATCATTGGACTTGCTGA

Protein sequence

MAGPSSAPSSASSSSASQFTYSNGPPPVPLPVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPESMHFLLSLISRVCNHWTC*
Homology
[Close]
BLAST of MELO3C008711 vs. TrEMBL
Match: A0A0A0LH39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.8e-52
Identity = 112/143 (78.32%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 1   MAGPSSAPSSASSSSASQFTYSNG------------------------------PPPVPL 60
           MAGPSSAPSSASSSSASQFTYSNG                              PPPVPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 114
           PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

[Close]
BLAST of MELO3C008711 vs. TrEMBL
Match: K4BPF7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-40
Identity = 92/132 (69.70%), Postives = 100/132 (75.76%), Query Frame = 1 

Query: 5   SSAPSS--ASSSSASQFTYSNG---------------------PPPVPLPVAPVYPAPAP 64
           SS PS+  A++SS+SQFTYSNG                     PPPV LPV  VYPAPA 
Sbjct: 2   SSMPSTSAAATSSSSQFTYSNGTYFPTPFHLQQQPPQPYIGAAPPPVQLPVPSVYPAPAA 61

Query: 65  PPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 114
            P VYTLPQ+QQAQQLFQRDAQTITPEALE+VKAALASSEIEHKAE KKKA+PRKAAG S
Sbjct: 62  IPGVYTLPQFQQAQQLFQRDAQTITPEALENVKAALASSEIEHKAEAKKKAVPRKAAGHS 121

[Close]
BLAST of MELO3C008711 vs. TrEMBL
Match: K4BPF5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 91/132 (68.94%), Postives = 99/132 (75.00%), Query Frame = 1 

Query: 5   SSAPSS--ASSSSASQFTYSNG---------------------PPPVPLPVAPVYPAPAP 64
           SS PS+  A++SS+SQFTYSNG                     PPPV LPV  VYPAPA 
Sbjct: 2   SSMPSTSAAATSSSSQFTYSNGTYFPTPFHLQQHPPQPYIGAAPPPVQLPVPSVYPAPAV 61

Query: 65  PPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 114
            P VYTLPQ+QQAQQLFQRDAQTITPEALE+VKAALAS EIEHKAE KKKA+PRKAAG S
Sbjct: 62  IPGVYTLPQFQQAQQLFQRDAQTITPEALENVKAALASCEIEHKAEAKKKAVPRKAAGHS 121

[Close]
BLAST of MELO3C008711 vs. TrEMBL
Match: F6H614_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00630 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 93/146 (63.70%), Postives = 102/146 (69.86%), Query Frame = 1 

Query: 5   SSAPSSASSSSASQFTYSNG-----------------------------PPPVPLPV--- 64
           +S  +S+S+SS+SQFTYSN                              PPPV +PV   
Sbjct: 2   ASTSASSSTSSSSQFTYSNASYFPLPFHLQQSDPMAAVSQYPKPYVAPPPPPVQVPVPPV 61

Query: 65  -----APVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 114
                APVYPAPAP   VY+LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE
Sbjct: 62  KIPAVAPVYPAPAPVAGVYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 121

[Close]
BLAST of MELO3C008711 vs. TrEMBL
Match: A0A0V0HZ54_SOLCH (Putative RNA-binding protein 42-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.6e-39
Identity = 89/132 (67.42%), Postives = 99/132 (75.00%), Query Frame = 1 

Query: 5   SSAPSS--ASSSSASQFTYSNG---------------------PPPVPLPVAPVYPAPAP 64
           SS PS+  A++SS+SQFTYSNG                     PPPV LP   +YPAPA 
Sbjct: 2   SSVPSTSAAATSSSSQFTYSNGTYFPTPFHLQQQPPQPYIGAAPPPVQLPAPSLYPAPAA 61

Query: 65  PPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 114
            P VYTLPQ+QQAQQLFQRDAQTITPEALE+VKAALASSEIEHKAE KKK++PRKAAG S
Sbjct: 62  IPGVYTLPQFQQAQQLFQRDAQTITPEALENVKAALASSEIEHKAEAKKKSVPRKAAGHS 121

[Close]
BLAST of MELO3C008711 vs. TAIR10
Match: AT3G04500.1 (AT3G04500.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 151.0 bits (380), Expect = 5.2e-37
Identity = 86/133 (64.66%), Postives = 92/133 (69.17%), Query Frame = 1 

Query: 4   PSSAPSSASSSSASQFTYSNGP-----------------PPVPLPVAP-----VYPAPAP 63
           PSS   S+SSSS+SQ+TY+                    P VP PVA      VYP P  
Sbjct: 5   PSSG--SSSSSSSSQYTYAANSYYSAPYQPPQPYAAAPSPAVPAPVASIPGATVYPQPVG 64

Query: 64  P-PAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQ 114
           P PAVY  PQYQQA QLFQRDAQTITPEALE+VKAALASSE EHKAETKK+AIPRKAAGQ
Sbjct: 65  PVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPRKAAGQ 124

[Close]
BLAST of MELO3C008711 vs. NCBI nr
Match: gi|449470234|ref|XP_004152823.1| (PREDICTED: RNA-binding protein 42 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 4.1e-52
Identity = 112/143 (78.32%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 1   MAGPSSAPSSASSSSASQFTYSNG------------------------------PPPVPL 60
           MAGPSSAPSSASSSSASQFTYSNG                              PPPVPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 114
           PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

[Close]
BLAST of MELO3C008711 vs. NCBI nr
Match: gi|659082432|ref|XP_008441837.1| (PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 4.1e-52
Identity = 112/143 (78.32%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 1   MAGPSSAPSSASSSSASQFTYSNG------------------------------PPPVPL 60
           MAGPSSAPSSASSSSASQFTYSNG                              PPPVPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPPYPSPYVAPPGPPPVPL 60

Query: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 114
           PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

[Close]
BLAST of MELO3C008711 vs. NCBI nr
Match: gi|460382109|ref|XP_004236782.1| (PREDICTED: RNA-binding protein 42-like [Solanum lycopersicum])

HSP 1 Score: 172.6 bits (436), Expect = 4.7e-40
Identity = 92/132 (69.70%), Postives = 100/132 (75.76%), Query Frame = 1 

Query: 5   SSAPSS--ASSSSASQFTYSNG---------------------PPPVPLPVAPVYPAPAP 64
           SS PS+  A++SS+SQFTYSNG                     PPPV LPV  VYPAPA 
Sbjct: 33  SSMPSTSAAATSSSSQFTYSNGTYFPTPFHLQQQPPQPYIGAAPPPVQLPVPSVYPAPAA 92

Query: 65  PPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 114
            P VYTLPQ+QQAQQLFQRDAQTITPEALE+VKAALASSEIEHKAE KKKA+PRKAAG S
Sbjct: 93  IPGVYTLPQFQQAQQLFQRDAQTITPEALENVKAALASSEIEHKAEAKKKAVPRKAAGHS 152

[Close]
BLAST of MELO3C008711 vs. NCBI nr
Match: gi|970020900|ref|XP_015071698.1| (PREDICTED: RNA-binding protein 42-like [Solanum pennellii])

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-39
Identity = 91/132 (68.94%), Postives = 99/132 (75.00%), Query Frame = 1 

Query: 5   SSAPSS--ASSSSASQFTYSNG---------------------PPPVPLPVAPVYPAPAP 64
           SS PS+  A++SS+SQFTYSNG                     PPP  LPV  VYPAPA 
Sbjct: 2   SSMPSTSAAATSSSSQFTYSNGTYFPTPFHLQQQPPQPYIGAAPPPAQLPVPSVYPAPAV 61

Query: 65  PPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 114
            P VYTLPQ+QQAQQLFQRDAQTITPEALE+VKAALASSEIEHKAE KKKA+PRKAAG S
Sbjct: 62  IPGVYTLPQFQQAQQLFQRDAQTITPEALENVKAALASSEIEHKAEAKKKAVPRKAAGHS 121

[Close]
BLAST of MELO3C008711 vs. NCBI nr
Match: gi|460382111|ref|XP_004236783.1| (PREDICTED: RNA-binding protein 42 [Solanum lycopersicum])

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 91/132 (68.94%), Postives = 99/132 (75.00%), Query Frame = 1 

Query: 5   SSAPSS--ASSSSASQFTYSNG---------------------PPPVPLPVAPVYPAPAP 64
           SS PS+  A++SS+SQFTYSNG                     PPPV LPV  VYPAPA 
Sbjct: 2   SSMPSTSAAATSSSSQFTYSNGTYFPTPFHLQQHPPQPYIGAAPPPVQLPVPSVYPAPAV 61

Query: 65  PPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 114
            P VYTLPQ+QQAQQLFQRDAQTITPEALE+VKAALAS EIEHKAE KKKA+PRKAAG S
Sbjct: 62  IPGVYTLPQFQQAQQLFQRDAQTITPEALENVKAALASCEIEHKAEAKKKAVPRKAAGHS 121

The following BLAST results are available for this feature:
BLAST of MELO3C008711 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH39_CUCSA2.8e-5278.32Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075290 PE=4 SV=1[more]
K4BPF7_SOLLC3.3e-4069.70Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
K4BPF5_SOLLC1.6e-3968.94Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
F6H614_VITVI2.8e-3963.70Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00630 PE=4 SV=... [more]
A0A0V0HZ54_SOLCH3.6e-3967.42Putative RNA-binding protein 42-like OS=Solanum chacoense PE=4 SV=1[more]
BLAST of MELO3C008711 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04500.15.2e-3764.66 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of MELO3C008711 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449470234|ref|XP_004152823.1|4.1e-5278.32PREDICTED: RNA-binding protein 42 [Cucumis sativus][more]
gi|659082432|ref|XP_008441837.1|4.1e-5278.32PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo][more]
gi|460382109|ref|XP_004236782.1|4.7e-4069.70PREDICTED: RNA-binding protein 42-like [Solanum lycopersicum][more]
gi|970020900|ref|XP_015071698.1|1.8e-3968.94PREDICTED: RNA-binding protein 42-like [Solanum pennellii][more]
gi|460382111|ref|XP_004236783.1|2.3e-3968.94PREDICTED: RNA-binding protein 42 [Solanum lycopersicum][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU59954melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008711T1MELO3C008711T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU59954MU59954transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008711Csa2G075290Cucumber (Chinese Long) v2cumeB133
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008711Cucumber (Chinese Long) v3cucmeB141
MELO3C008711Watermelon (97103) v2mewmbB369
MELO3C008711Wax gourdmewgoB456
MELO3C008711Wax gourdmewgoB468
MELO3C008711Cucumber (Gy14) v1cgymeB320
MELO3C008711Cucurbita maxima (Rimu)cmameB175
MELO3C008711Cucurbita maxima (Rimu)cmameB737
MELO3C008711Cucurbita moschata (Rifu)cmomeB164
MELO3C008711Cucurbita moschata (Rifu)cmomeB725
MELO3C008711Wild cucumber (PI 183967)cpimeB139
MELO3C008711Watermelon (Charleston Gray)mewcgB367
MELO3C008711Watermelon (97103) v1mewmB426
MELO3C008711Cucurbita pepo (Zucchini)cpemeB102
MELO3C008711Cucurbita pepo (Zucchini)cpemeB777
MELO3C008711Bottle gourd (USVL1VR-Ls)lsimeB115
MELO3C008711Cucumber (Gy14) v2cgybmeB120
MELO3C008711Silver-seed gourdcarmeB0170
MELO3C008711Silver-seed gourdcarmeB0712