MELO3C008706 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008706
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Non-POU domain-containing octamer-binding protein
Location	chr5 : 17575971 .. 17576189 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACGGAGGGCGGCTGGGCGTCGACAGACACGGTCGGACGAAGGGTGCACGGCGGCGATTGGTTGCGTGAGACCGAGAGGGCGATCGAAAATGACGCGGCCGCGACGGTTGTACGCTGGCGTTGTGAAACCGACGACGACGGAGACGGAGACTGACGACCACCACAGAGAAGGAGACAGAGACGGACGAGCTTGCGAGTGGAATAGAAATAGATGA

mRNA sequence

ATGCGACGGAGGGCGGCTGGGCGTCGACAGACACGGTCGGACGAAGGGTGCACGGCGGCGATTGGTTGCGTGAGACCGAGAGGGCGATCGAAAATGACGCGGCCGCGACGGTTGTACGCTGGCGTTGTGAAACCGACGACGACGGAGACGGAGACTGACGACCACCACAGAGAAGGAGACAGAGACGGACGAGCTTGCGAGTGGAATAGAAATAGATGA

Coding sequence (CDS)

ATGCGACGGAGGGCGGCTGGGCGTCGACAGACACGGTCGGACGAAGGGTGCACGGCGGCGATTGGTTGCGTGAGACCGAGAGGGCGATCGAAAATGACGCGGCCGCGACGGTTGTACGCTGGCGTTGTGAAACCGACGACGACGGAGACGGAGACTGACGACCACCACAGAGAAGGAGACAGAGACGGACGAGCTTGCGAGTGGAATAGAAATAGATGA

Protein sequence

MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGDRDGRACEWNRNR*

Homology

[Close]

BLAST of MELO3C008706 vs. TrEMBL
Match: E5GCG0_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-18
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1   MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGD 60
           MRRRAAGRRQTRSDEG T A G ++PRGRS+M RPRR   GV KPTTTET+T DHHR+GD
Sbjct: 223 MRRRAAGRRQTRSDEGRTTASGGMKPRGRSEMVRPRRKDVGVAKPTTTETKTGDHHRDGD 282

Query: 61  ------RDGRACEWNRNR 73
                  DG ACE  R R
Sbjct: 283 GDGDRGGDGDACERERWR 300

[Close]

BLAST of MELO3C008706 vs. NCBI nr
Match: gi|307136344|gb|ADN34159.1| (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-18
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1   MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGD 60
           MRRRAAGRRQTRSDEG T A G ++PRGRS+M RPRR   GV KPTTTET+T DHHR+GD
Sbjct: 223 MRRRAAGRRQTRSDEGRTTASGGMKPRGRSEMVRPRRKDVGVAKPTTTETKTGDHHRDGD 282

Query: 61  ------RDGRACEWNRNR 73
                  DG ACE  R R
Sbjct: 283 GDGDRGGDGDACERERWR 300

The following BLAST results are available for this feature:

BLAST of MELO3C008706 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCG0_CUCME	2.6e-18	66.67	NBS-LRR type resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C008706 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136344\|gb\|ADN34159.1\|	3.7e-18	66.67	NBS-LRR type resistance protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008706T1	MELO3C008706T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008706	Wax gourd	mewgoB456
MELO3C008706	Wax gourd	mewgoB468
MELO3C008706	Cucumber (Gy14) v1	cgymeB320
MELO3C008706	Cucurbita maxima (Rimu)	cmameB175
MELO3C008706	Cucurbita maxima (Rimu)	cmameB737
MELO3C008706	Cucurbita moschata (Rifu)	cmomeB164
MELO3C008706	Cucurbita moschata (Rifu)	cmomeB725
MELO3C008706	Wild cucumber (PI 183967)	cpimeB139
MELO3C008706	Cucumber (Chinese Long) v2	cumeB133
MELO3C008706	Watermelon (Charleston Gray)	mewcgB367
MELO3C008706	Watermelon (97103) v1	mewmB426
MELO3C008706	Cucurbita pepo (Zucchini)	cpemeB102
MELO3C008706	Cucurbita pepo (Zucchini)	cpemeB777
MELO3C008706	Bottle gourd (USVL1VR-Ls)	lsimeB115
MELO3C008706	Cucumber (Gy14) v2	cgybmeB120
MELO3C008706	Silver-seed gourd	carmeB0170
MELO3C008706	Silver-seed gourd	carmeB0712
MELO3C008706	Cucumber (Chinese Long) v3	cucmeB141
MELO3C008706	Watermelon (97103) v2	mewmbB369