MELO3C008644 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008644
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcriptional regulator ATRX-like protein
Location	chr5 : 16001621 .. 16002098 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCACGAAACGCTACTCCAAGAGAATGAAGAGGAGAAACTATCCAAGGAGGAGCAAGATATGGCATGGGAAGTGTACAGAAAATCATTAGAATGGGAGGAAGTGCAGAAAGTTTCACCAGGAGATTTTATATCTGAGCAAAAGTTAACCACTTCAAATAATGCCCATCCTGCACCGGAGACTATTGATCTGGCACAGTCAAGGGCCAGGAACCGATTTGTTTCCCGTAAATGCACAAATCTTTCTCATTTGCTGACACTCAGAAGTCAGGGGACAAAGGTTGGTTGTAGTACAGTATGCGGGGAATGTGCACAGGAGATAAGCTGGGAAGACCTTAACAGAGATGCCAAGTTAGGGAAGTGAACCATTTTGTCTATTTTTTGTAAGTCAAGTTCTAACACAACATAGCCATTCCTTTTTGTAACATGAAGCCCCCCACCCTCATCCTCATTTATAATTGGCATGTCTGCATCCTGCAT

mRNA sequence

AGCACGAAACGCTACTCCAAGAGAATGAAGAGGAGAAACTATCCAAGGAGGAGCAAGATATGGCATGGGAAGTGTACAGAAAATCATTAGAATGGGAGGAAGTGCAGAAAGTTTCACCAGGAGATTTTATATCTGAGCAAAAGTTAACCACTTCAAATAATGCCCATCCTGCACCGGAGACTATTGATCTGGCACAGTCAAGGGCCAGGAACCGATTTGTTTCCCGTAAATGCACAAATCTTTCTCATTTGCTGACACTCAGAAGTCAGGGGACAAAGGTTGGTTGTAGTACAGTATGCGGGGAATGTGCACAGGAGATAAGCTGGGAAGACCTTAACAGAGATGCCAAGTTAGGGAAGTGAACCATTTTGTCTATTTTTTGTAAGTCAAGTTCTAACACAACATAGCCATTCCTTTTTGTAACATGAAGCCCCCCACCCTCATCCTCATTTATAATTGGCATGTCTGCATCCTGCAT

Coding sequence (CDS)

ATGGCATGGGAAGTGTACAGAAAATCATTAGAATGGGAGGAAGTGCAGAAAGTTTCACCAGGAGATTTTATATCTGAGCAAAAGTTAACCACTTCAAATAATGCCCATCCTGCACCGGAGACTATTGATCTGGCACAGTCAAGGGCCAGGAACCGATTTGTTTCCCGTAAATGCACAAATCTTTCTCATTTGCTGACACTCAGAAGTCAGGGGACAAAGGTTGGTTGTAGTACAGTATGCGGGGAATGTGCACAGGAGATAAGCTGGGAAGACCTTAACAGAGATGCCAAGTTAGGGAAGTGA

Protein sequence

MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK*

Homology

[Close]

BLAST of MELO3C008644 vs. Swiss-Prot
Match: CHR20_ARATH (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana GN=ATRX PE=2 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 4.6e-19
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYR++LEWEEVQ+V   +     K + S    P P+     +   R+RFV+R CT 
Sbjct: 1380 MAWEVYRRALEWEEVQRVPFSESPVVPKPSPSTQTEPLPQP----KGFNRSRFVNRNCTR 1439

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKL 99
            ++H LTL SQG KVG STVCGEC + I WED+   +KL
Sbjct: 1440 IAHQLTLISQGLKVGSSTVCGECGRVIRWEDVIPASKL 1473

[Close]

BLAST of MELO3C008644 vs. TrEMBL
Match: E0CU60_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g01460 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-29
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQ---SRARNRFVSRK 60
            MAWEVYR++LEWEEVQ+V   +   E+K   SN A    E+I L++   SR RN  V RK
Sbjct: 1375 MAWEVYRRTLEWEEVQRVPLDESTFERKPAVSNAAPLVTESISLSETKISRLRNHLVQRK 1434

Query: 61   CTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAK 98
            CTNLSH+LTLRSQGTKVGCSTVCGECAQEISWEDLNRD +
Sbjct: 1435 CTNLSHMLTLRSQGTKVGCSTVCGECAQEISWEDLNRDGR 1474

[Close]

BLAST of MELO3C008644 vs. TrEMBL
Match: A5C3T7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027611 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-29
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 1   MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQ---SRARNRFVSRK 60
           MAWEVYR++LEWEEVQ+V   +   E+K   SN A    E+I L++   SR RN  V RK
Sbjct: 1   MAWEVYRRTLEWEEVQRVPLDESTFERKPAVSNAAPLVTESISLSETKISRLRNHLVQRK 60

Query: 61  CTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAK 98
           CTNLSH+LTLRSQGTKVGCSTVCGECAQEISWEDLNRD +
Sbjct: 61  CTNLSHMLTLRSQGTKVGCSTVCGECAQEISWEDLNRDGR 100

[Close]

BLAST of MELO3C008644 vs. TrEMBL
Match: A0A061F1R3_THECC (Chromatin remodeling complex subunit isoform 1 OS=Theobroma cacao GN=TCM_026141 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-29
Identity = 67/104 (64.42%), Postives = 79/104 (75.96%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNA--HPAPETIDLAQSRA--RNRFVSR 60
            MAWEVYRK++EWEEVQ+VS  +  +E+K   S+ +   P PE I L Q R   R+R V R
Sbjct: 1418 MAWEVYRKTIEWEEVQRVSVDESAAERKPAVSDVSPPKPEPEPIHLTQPRGIFRSRIVQR 1477

Query: 61   KCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            KCTNL+HLLTLRSQGTK+GCSTVCGEC QEISWEDLNRD K  +
Sbjct: 1478 KCTNLAHLLTLRSQGTKMGCSTVCGECGQEISWEDLNRDGKTAR 1521

[Close]

BLAST of MELO3C008644 vs. TrEMBL
Match: W9S6N2_9ROSA (Transcriptional regulator ATRX-like protein OS=Morus notabilis GN=L484_024481 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.4e-28
Identity = 62/100 (62.00%), Postives = 72/100 (72.00%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRK+ EWEEVQ+V   +  +EQ    S +A   P+T    +S  RN  V RKCTN
Sbjct: 1341 MAWEVYRKTFEWEEVQRVPLSETATEQNQPGSKDAPEEPDTSSFRRSNMRNHVVPRKCTN 1400

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            L+H+LTLRSQGTK GCSTVCGECAQEISWE LNRD +  K
Sbjct: 1401 LAHMLTLRSQGTKSGCSTVCGECAQEISWETLNRDGRTSK 1440

[Close]

BLAST of MELO3C008644 vs. TrEMBL
Match: M5W6K1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000170mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 60/100 (60.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYR++LEWEEVQ+V   +   ++K    N A  APE   LA+S+A++  V RKCTN
Sbjct: 1441 MAWEVYRRALEWEEVQRVPLNESAVDRKPAALNVASSAPEMSSLAESKAKDISVQRKCTN 1500

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTK+GC+TVCGEC +EI W+DL+RD +L +
Sbjct: 1501 LSHLLTLRSQGTKIGCTTVCGECGREICWKDLHRDGRLAR 1540

[Close]

BLAST of MELO3C008644 vs. TAIR10
Match: AT1G08600.3 (AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-20
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYR++LEWEEVQ+V   +     K + S    P P+     +   R+RFV+R CT 
Sbjct: 1380 MAWEVYRRALEWEEVQRVPFSESPVVPKPSPSTQTEPLPQP----KGFNRSRFVNRNCTR 1439

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKL 99
            ++H LTL SQG KVG STVCGEC + I WED+   +KL
Sbjct: 1440 IAHQLTLISQGLKVGSSTVCGECGRVIRWEDVIPASKL 1473

[Close]

BLAST of MELO3C008644 vs. NCBI nr
Match: gi|778667969|ref|XP_011649018.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X3 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 5.9e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1381 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1440

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1441 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1480

[Close]

BLAST of MELO3C008644 vs. NCBI nr
Match: gi|659082329|ref|XP_008441780.1| (PREDICTED: transcriptional regulator ATRX isoform X1 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 5.9e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1391 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1450

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1451 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1490

[Close]

BLAST of MELO3C008644 vs. NCBI nr
Match: gi|778667972|ref|XP_011649019.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 5.9e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1284 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1343

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1344 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1383

[Close]

BLAST of MELO3C008644 vs. NCBI nr
Match: gi|659082333|ref|XP_008441784.1| (PREDICTED: transcriptional regulator ATRX isoform X2 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 5.9e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1385 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1444

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1445 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1484

[Close]

BLAST of MELO3C008644 vs. NCBI nr
Match: gi|778667959|ref|XP_011649015.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 5.9e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1391 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1450

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1451 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1490

The following BLAST results are available for this feature:

BLAST of MELO3C008644 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CHR20_ARATH	4.6e-19	50.00	Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana GN=ATRX PE=2 SV=2	[more]

BLAST of MELO3C008644 vs. TrEMBL


Match Name	E-value	Identity	Description
E0CU60_VITVI	3.4e-29	67.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g01460 PE=4 SV=...	[more]
A5C3T7_VITVI	3.4e-29	67.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027611 PE=4 SV=1	[more]
A0A061F1R3_THECC	5.8e-29	64.42	Chromatin remodeling complex subunit isoform 1 OS=Theobroma cacao GN=TCM_026141 ...	[more]
W9S6N2_9ROSA	6.4e-28	62.00	Transcriptional regulator ATRX-like protein OS=Morus notabilis GN=L484_024481 PE...	[more]
M5W6K1_PRUPE	1.4e-27	60.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000170mg PE=4 SV=1	[more]

BLAST of MELO3C008644 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08600.3	2.6e-20	50.00	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]

BLAST of MELO3C008644 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778667969\|ref\|XP_011649018.1\|	5.9e-51	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X3 [Cucumis sativus]	[more]
gi\|659082329\|ref\|XP_008441780.1\|	5.9e-51	100.00	PREDICTED: transcriptional regulator ATRX isoform X1 [Cucumis melo]	[more]
gi\|778667972\|ref\|XP_011649019.1\|	5.9e-51	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis sativus]	[more]
gi\|659082333\|ref\|XP_008441784.1\|	5.9e-51	100.00	PREDICTED: transcriptional regulator ATRX isoform X2 [Cucumis melo]	[more]
gi\|778667959\|ref\|XP_011649015.1\|	5.9e-51	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008644T1	MELO3C008644T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008644	Lsi11G008980	Bottle gourd (USVL1VR-Ls)	lsimeB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008644	Silver-seed gourd	carmeB0487
MELO3C008644	Cucumber (Chinese Long) v3	cucmeB144
MELO3C008644	Watermelon (97103) v2	mewmbB372
MELO3C008644	Wax gourd	mewgoB458
MELO3C008644	Cucumber (Gy14) v1	cgymeB321
MELO3C008644	Cucurbita maxima (Rimu)	cmameB178
MELO3C008644	Cucurbita maxima (Rimu)	cmameB739
MELO3C008644	Cucurbita moschata (Rifu)	cmomeB167
MELO3C008644	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008644	Wild cucumber (PI 183967)	cpimeB142
MELO3C008644	Cucumber (Chinese Long) v2	cumeB137
MELO3C008644	Watermelon (Charleston Gray)	mewcgB369
MELO3C008644	Watermelon (97103) v1	mewmB428
MELO3C008644	Cucurbita pepo (Zucchini)	cpemeB106
MELO3C008644	Cucurbita pepo (Zucchini)	cpemeB780
MELO3C008644	Cucumber (Gy14) v2	cgybmeB125