MELO3C008642 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008642
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA repair protein-related
Locationchr5 : 15980231 .. 15981127 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATAGTTGAGGTGCGCATAAGTTGGTTTGGACACTCATGGATATTTTAAAAAAAAGAAGCATGGTTATACTACACACAAATCTACATTATGTATGTATATGATTTTGGCTATCTTTTAATTGCCAGGATGGACCAGATATTCTTGTATGTGACGAGGCCCACATGATTAAGAATACCAAGGCTGATATAACACAGGCATTGAAACAAGTGAAATGCCAGAGGAGGATTGCGCTGACTGGATCACCGCTACAGAACAATCTCATGGAGTACTATTGTGTAAGTCTTTGAAACAGTTACACCAGCCGATACCTTTATGAATGATATTCTTTTTTTGACCTTATAATTGGCACAGATGGTTGATTTTGTGAGAGAAGGTTTCCTGGGAAGTAGCCATGAATTTAGGAATCGGTAAGACTCCACCTTCAGTCTTCTTTTCTTCTGAGTTCTGCCTTTCTGTCTTTATATTTCTCTTACATATTCTCTTGTGCAGCTTCCAGAACCCCATAGAGAATGGGCAGCATACTAATTCAACTCTGGATGATGTTAAAATAATGAACCAGAGGTCTCATATCCTATATGAACAGTTGAAAGGGTTTGTTCAAAGAATGGACATGACCGTGGTGAAGAAGGACTTGCCACCTAAAACTGTCTTTGTGATATCCGTAAAACTCTCTCCCTTACAGAGGAAGTTATACAAAAGATTTCTTGACGTGCATGGATTTAATAATGGCAAGGATTCTAGTGAACAGTTAAGGAAACGGAGCTTTTTTGCTGGGTACCAAGCACTGGCCCAGGTATGCTCATGACATCTGAATTTGATTTTTGAGCTGCTAATTTACATTTTGTAGCTTATATTTTATAGCATGGATGCAGCGCAGCTGGACTGGATTAG

mRNA sequence

ATGAGAATAGTTGAGGATGGACCAGATATTCTTGTATGTGACGAGGCCCACATGATTAAGAATACCAAGGCTGATATAACACAGGCATTGAAACAAGTGAAATGCCAGAGGAGGATTGCGCTGACTGGATCACCGCTACAGAACAATCTCATGGAGTACTATTGTATGGTTGATTTTGTGAGAGAAGGTTTCCTGGGAAGTAGCCATGAATTTAGGAATCGCTTCCAGAACCCCATAGAGAATGGGCAGCATACTAATTCAACTCTGGATGATGTTAAAATAATGAACCAGAGGTCTCATATCCTATATGAACAGTTGAAAGGGTTTGTTCAAAGAATGGACATGACCGTGGTGAAGAAGGACTTGCCACCTAAAACTGTCTTTGTGATATCCGTAAAACTCTCTCCCTTACAGAGGAAGTTATACAAAAGATTTCTTGACGTGCATGGATTTAATAATGGCAAGGATTCTAGTGAACAGTTAAGGAAACGGAGCTTTTTTGCTGGGTACCAAGCACTGGCCCAGCATGGATGCAGCGCAGCTGGACTGGATTAG

Coding sequence (CDS)

ATGAGAATAGTTGAGGATGGACCAGATATTCTTGTATGTGACGAGGCCCACATGATTAAGAATACCAAGGCTGATATAACACAGGCATTGAAACAAGTGAAATGCCAGAGGAGGATTGCGCTGACTGGATCACCGCTACAGAACAATCTCATGGAGTACTATTGTATGGTTGATTTTGTGAGAGAAGGTTTCCTGGGAAGTAGCCATGAATTTAGGAATCGCTTCCAGAACCCCATAGAGAATGGGCAGCATACTAATTCAACTCTGGATGATGTTAAAATAATGAACCAGAGGTCTCATATCCTATATGAACAGTTGAAAGGGTTTGTTCAAAGAATGGACATGACCGTGGTGAAGAAGGACTTGCCACCTAAAACTGTCTTTGTGATATCCGTAAAACTCTCTCCCTTACAGAGGAAGTTATACAAAAGATTTCTTGACGTGCATGGATTTAATAATGGCAAGGATTCTAGTGAACAGTTAAGGAAACGGAGCTTTTTTGCTGGGTACCAAGCACTGGCCCAGCATGGATGCAGCGCAGCTGGACTGGATTAG

Protein sequence

MRIVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQHGCSAAGLD*
Homology
[Close]
BLAST of MELO3C008642 vs. Swiss-Prot
Match: CHR20_ARATH (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana GN=ATRX PE=2 SV=2)

HSP 1 Score: 293.1 bits (749), Expect = 2.1e-78
Identity = 146/172 (84.88%), Postives = 158/172 (91.86%), Query Frame = 1 

Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            + DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 865  LRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 924

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKGFVQRMDM VVKKDLP
Sbjct: 925  FLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 984

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFVISVKLSPLQR LY+RFL+++GF++G+ + E++RK +FFA YQ LAQ
Sbjct: 985  PKTVFVISVKLSPLQRILYQRFLELYGFSDGR-TDERMRK-NFFAAYQVLAQ 1034

[Close]
BLAST of MELO3C008642 vs. Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=3)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-43
Identity = 83/174 (47.70%), Postives = 121/174 (69.54%), Query Frame = 1 

Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            +V+ GPD +VCDE H++KN  + +++A+  +K +RRI LTG+PLQNNL+EY+CMV+F++E
Sbjct: 1693 LVDPGPDFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKE 1752

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
              LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G VQR D T + K L
Sbjct: 1753 NLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFL 1812

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLD-VHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPK  +V++V+++ +Q KLY+ +LD + G  N  +          F  +Q L++
Sbjct: 1813 PPKHEYVLAVRMTAIQCKLYQYYLDHLTGVGNSTEGGRGKAGAKLFQDFQMLSR 1866

[Close]
BLAST of MELO3C008642 vs. Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-43
Identity = 82/174 (47.13%), Postives = 121/174 (69.54%), Query Frame = 1 

Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            +V+ GPD +VCDE H++KN  + +++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E
Sbjct: 1708 LVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1767

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
              LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G VQR D T + K L
Sbjct: 1768 NLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFL 1827

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLD-VHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPK  +V++V+++ +Q KLY+ +LD + G  N  +          F  +Q L++
Sbjct: 1828 PPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSR 1881

[Close]
BLAST of MELO3C008642 vs. Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-43
Identity = 82/174 (47.13%), Postives = 121/174 (69.54%), Query Frame = 1 

Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            +V+ GPD +VCDE H++KN  + +++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E
Sbjct: 1708 LVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1767

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
              LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G VQR D T + K L
Sbjct: 1768 NLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFL 1827

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLD-VHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPK  +V++V+++ +Q KLY+ +LD + G  N  +          F  +Q L++
Sbjct: 1828 PPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSR 1881

[Close]
BLAST of MELO3C008642 vs. Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-43
Identity = 82/174 (47.13%), Postives = 121/174 (69.54%), Query Frame = 1 

Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            +V+ GPD +VCDE H++KN  + +++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E
Sbjct: 1708 LVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1767

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
              LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G VQR D T + K L
Sbjct: 1768 NLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFL 1827

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLD-VHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPK  +V++V+++ +Q KLY+ +LD + G  N  +          F  +Q L++
Sbjct: 1828 PPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSR 1881

[Close]
BLAST of MELO3C008642 vs. TrEMBL
Match: A0A072VY46_MEDTR (Chromatin remodeling complex subunit OS=Medicago truncatula GN=MTR_1g080420 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 8.0e-85
Identity = 155/172 (90.12%), Postives = 165/172 (95.93%), Query Frame = 1 

Query: 4   VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
           ++DGPDILVCDEAH+IKNTKAD+T ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 728 LQDGPDILVCDEAHIIKNTKADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 787

Query: 64  FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
           FLGSSHEFRNRFQNPIENGQHTNST  DVKIMNQRSHILYEQLKGFVQRMDM VVKKDLP
Sbjct: 788 FLGSSHEFRNRFQNPIENGQHTNSTQTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 847

Query: 124 PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
           PKTVFVI+VKLSPLQRKLYKRF+DVHGF+N K++ E LRKRSFFAGYQALA+
Sbjct: 848 PKTVFVITVKLSPLQRKLYKRFIDVHGFSNVKENQENLRKRSFFAGYQALAR 899

[Close]
BLAST of MELO3C008642 vs. TrEMBL
Match: G7I6U2_MEDTR (Chromatin remodeling complex subunit OS=Medicago truncatula GN=MTR_1g080420 PE=4 SV=2)

HSP 1 Score: 321.2 bits (822), Expect = 8.0e-85
Identity = 155/172 (90.12%), Postives = 165/172 (95.93%), Query Frame = 1 

Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            ++DGPDILVCDEAH+IKNTKAD+T ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 859  LQDGPDILVCDEAHIIKNTKADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 918

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSSHEFRNRFQNPIENGQHTNST  DVKIMNQRSHILYEQLKGFVQRMDM VVKKDLP
Sbjct: 919  FLGSSHEFRNRFQNPIENGQHTNSTQTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 978

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFVI+VKLSPLQRKLYKRF+DVHGF+N K++ E LRKRSFFAGYQALA+
Sbjct: 979  PKTVFVITVKLSPLQRKLYKRFIDVHGFSNVKENQENLRKRSFFAGYQALAR 1030

[Close]
BLAST of MELO3C008642 vs. TrEMBL
Match: K4BRY7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 5.2e-84
Identity = 154/172 (89.53%), Postives = 163/172 (94.77%), Query Frame = 1 

Query: 4   VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
           ++DGPDILVCDEAH+IKNT+AD+TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 588 LQDGPDILVCDEAHIIKNTRADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 647

Query: 64  FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
           FLGSSHEFRNRFQNPIENGQHTNST DDVKIMNQRSHILYEQLKGFVQRMDM VVK DLP
Sbjct: 648 FLGSSHEFRNRFQNPIENGQHTNSTADDVKIMNQRSHILYEQLKGFVQRMDMNVVKMDLP 707

Query: 124 PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
           PKTV+V+SVKLSPLQRKLYKRFLDVHGF   K S E++ KRSFFAGYQALAQ
Sbjct: 708 PKTVYVMSVKLSPLQRKLYKRFLDVHGFTKDKVSGEKIMKRSFFAGYQALAQ 759

[Close]
BLAST of MELO3C008642 vs. TrEMBL
Match: E0CU60_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g01460 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.0e-83
Identity = 154/172 (89.53%), Postives = 163/172 (94.77%), Query Frame = 1 

Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            ++DGPDILVCDEAHMIKNT+AD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 851  LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 910

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSSHEFRNRFQNPIENGQH NST DDVKIMNQRSHILYEQLKGFVQRMDM+VVK DLP
Sbjct: 911  FLGSSHEFRNRFQNPIENGQHMNSTSDDVKIMNQRSHILYEQLKGFVQRMDMSVVKNDLP 970

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFV++VKLS LQRKLYKRFLDVHGF N K SS+++RKR FFAGYQALAQ
Sbjct: 971  PKTVFVMAVKLSSLQRKLYKRFLDVHGFTNDKVSSDKIRKRCFFAGYQALAQ 1022

[Close]
BLAST of MELO3C008642 vs. TrEMBL
Match: A0A061F8L0_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_026141 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.0e-83
Identity = 156/172 (90.70%), Postives = 164/172 (95.35%), Query Frame = 1 

Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            ++DGPDILVCDEAH IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 865  LQDGPDILVCDEAHTIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 924

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSSHEFRNRFQNPIENGQHTNST +DVKIMNQRSHILYEQLKGFVQRMDM+VVKKDLP
Sbjct: 925  FLGSSHEFRNRFQNPIENGQHTNSTHEDVKIMNQRSHILYEQLKGFVQRMDMSVVKKDLP 984

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFVI+VKLSPLQRKLYKRFLDVHGF N   S+E++RK SFFAGYQALAQ
Sbjct: 985  PKTVFVIAVKLSPLQRKLYKRFLDVHGFTNDSSSNEKIRK-SFFAGYQALAQ 1035

[Close]
BLAST of MELO3C008642 vs. TAIR10
Match: AT1G08600.3 (AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 293.1 bits (749), Expect = 1.2e-79
Identity = 146/172 (84.88%), Postives = 158/172 (91.86%), Query Frame = 1 

Query: 4    VEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 63
            + DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG
Sbjct: 865  LRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 924

Query: 64   FLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLP 123
            FLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKGFVQRMDM VVKKDLP
Sbjct: 925  FLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 984

Query: 124  PKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PKTVFVISVKLSPLQR LY+RFL+++GF++G+ + E++RK +FFA YQ LAQ
Sbjct: 985  PKTVFVISVKLSPLQRILYQRFLELYGFSDGR-TDERMRK-NFFAAYQVLAQ 1034

[Close]
BLAST of MELO3C008642 vs. TAIR10
Match: AT3G19210.1 (AT3G19210.1 homolog of RAD54)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-24
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 1 

Query: 9   DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 68
           D+L+CDEAH +KN +    +AL  + C+RR+ L+G+P+QN+L E++ MV+F   G LG +
Sbjct: 317 DLLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDA 376

Query: 69  HEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVF 128
             FR+ ++ PI  G+   +T ++  +   RS  L  ++  F+ R    ++   LPPK + 
Sbjct: 377 AHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIE 436

Query: 129 VISVKLSPLQRKLYKRFLDVHGFNNG-KDSSEQLRKRSFFAGYQALAQH 177
           V+  K++ LQ  LY  F+          D+++Q +  ++    + L  H
Sbjct: 437 VVCCKMTTLQSTLYNHFISSKNLKRALADNAKQTKVLAYITALKKLCNH 485

[Close]
BLAST of MELO3C008642 vs. TAIR10
Match: AT3G54280.2 (AT3G54280.2 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-20
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 1 

Query: 12   VCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 71
            + DE H+IKN K+ IT A+KQ+K Q R+ L+G+P+QNN+ME + + DF+  GFLG+  +F
Sbjct: 1613 ILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQF 1672

Query: 72   RNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVIS 131
            +  +  P+   +    +  D +        L++Q+  F+ R     V  DLP K +    
Sbjct: 1673 QASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRY 1732

Query: 132  VKLSPLQRKLYKRF 146
              LSP+Q KLY++F
Sbjct: 1733 CDLSPVQLKLYEQF 1746

[Close]
BLAST of MELO3C008642 vs. TAIR10
Match: AT3G12810.1 (AT3G12810.1 SNF2 domain-containing protein / helicase domain-containing protein)

HSP 1 Score: 80.9 bits (198), Expect = 9.2e-16
Identity = 52/136 (38.24%), Postives = 70/136 (51.47%), Query Frame = 1 

Query: 11  LVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 70
           L+ DEAH+IKN K+   Q L     +RRI LTG+PLQN+LME + ++ F+      S  E
Sbjct: 661 LILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQE 720

Query: 71  FRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVI 130
           F++ F NPI             KI  +    L+  L+ F+ R     V+K LP K   VI
Sbjct: 721 FKDWFCNPI-----AGMVEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVI 780

Query: 131 SVKLSPLQRKLYKRFL 147
             +LS  QR LY+ F+
Sbjct: 781 FCRLSKRQRNLYEDFI 791

[Close]
BLAST of MELO3C008642 vs. TAIR10
Match: AT1G03750.1 (AT1G03750.1 switch 2)

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-15
Identity = 41/141 (29.08%), Postives = 80/141 (56.74%), Query Frame = 1 

Query: 9   DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 68
           +I++ DEAH +KN K+ + +A  ++K ++RI LTG+ +QN + E + + ++V  G LG+ 
Sbjct: 269 EIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTR 328

Query: 69  HEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGF-VQRMDMTVVKKDLPPKTV 128
             FR+ +  P++ GQ   +    V+I ++R   L   L+ + ++R     +   +  K  
Sbjct: 329 EHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKED 388

Query: 129 FVISVKLSPLQRKLYKRFLDV 149
            V+  ++S LQR++Y+R + +
Sbjct: 389 NVVFCQMSQLQRRVYQRMIQL 409

[Close]
BLAST of MELO3C008642 vs. NCBI nr
Match: gi|778667972|ref|XP_011649019.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 6.7e-93
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 1 

Query: 3   IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
           I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 759 ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 818

Query: 63  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
           GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 819 GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 878

Query: 123 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
           PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 879 PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 931

[Close]
BLAST of MELO3C008642 vs. NCBI nr
Match: gi|659082329|ref|XP_008441780.1| (PREDICTED: transcriptional regulator ATRX isoform X1 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 6.7e-93
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 1 

Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 866  ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 925

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
            GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 926  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 985

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 986  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 1038

[Close]
BLAST of MELO3C008642 vs. NCBI nr
Match: gi|778667965|ref|XP_011649017.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 6.7e-93
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 1 

Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 860  ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 919

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
            GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 920  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 979

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 980  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 1032

[Close]
BLAST of MELO3C008642 vs. NCBI nr
Match: gi|659082333|ref|XP_008441784.1| (PREDICTED: transcriptional regulator ATRX isoform X2 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 6.7e-93
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 1 

Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 860  ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 919

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
            GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 920  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 979

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 980  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 1032

[Close]
BLAST of MELO3C008642 vs. NCBI nr
Match: gi|778667959|ref|XP_011649015.1| (PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 6.7e-93
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 1 

Query: 3    IVEDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 62
            I++DGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE
Sbjct: 866  ILQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 925

Query: 63   GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 122
            GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL
Sbjct: 926  GFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDL 985

Query: 123  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 176
            PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ
Sbjct: 986  PPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSEQLRKRSFFAGYQALAQ 1038

The following BLAST results are available for this feature:
BLAST of MELO3C008642 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CHR20_ARATH2.1e-7884.88Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana GN=ATRX PE=2 SV=2[more]
ATRX_MOUSE2.2e-4347.70Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=3[more]
ATRX_HUMAN3.7e-4347.13Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5[more]
ATRX_PANTR3.7e-4347.13Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1[more]
ATRX_PONPY3.7e-4347.13Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1[more]
BLAST of MELO3C008642 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A072VY46_MEDTR8.0e-8590.12Chromatin remodeling complex subunit OS=Medicago truncatula GN=MTR_1g080420 PE=4... [more]
G7I6U2_MEDTR8.0e-8590.12Chromatin remodeling complex subunit OS=Medicago truncatula GN=MTR_1g080420 PE=4... [more]
K4BRY7_SOLLC5.2e-8489.53Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
E0CU60_VITVI2.0e-8389.53Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g01460 PE=4 SV=... [more]
A0A061F8L0_THECC2.0e-8390.70P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform... [more]
BLAST of MELO3C008642 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08600.31.2e-7984.88 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
AT3G19210.13.2e-2431.36 homolog of RAD54[more]
AT3G54280.21.6e-2036.57 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP b... [more]
AT3G12810.19.2e-1638.24 SNF2 domain-containing protein / helicase domain-containing protein[more]
AT1G03750.17.8e-1529.08 switch 2[more]
BLAST of MELO3C008642 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778667972|ref|XP_011649019.1|6.7e-9398.84PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis sativus][more]
gi|659082329|ref|XP_008441780.1|6.7e-9398.84PREDICTED: transcriptional regulator ATRX isoform X1 [Cucumis melo][more]
gi|778667965|ref|XP_011649017.1|6.7e-9398.84PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus][more]
gi|659082333|ref|XP_008441784.1|6.7e-9398.84PREDICTED: transcriptional regulator ATRX isoform X2 [Cucumis melo][more]
gi|778667959|ref|XP_011649015.1|6.7e-9398.84PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008642T1MELO3C008642T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 9..149
score: 7.3
IPR014001Helicase superfamily 1/2, ATP-binding domainPROFILEPS51192HELICASE_ATP_BIND_1coord: 1..63
score: 9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 10..49
score: 1.
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..112
score: 5.1
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 1..175
score: 1.5
NoneNo IPR availablePANTHERPTHR10799:SF350TRANSCRIPTIONAL REGULATOR ATRX HOMOLOGcoord: 1..175
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008642Cla007889Watermelon (97103) v1mewmB428
MELO3C008642CSPI02G07520Wild cucumber (PI 183967)cpimeB142
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008642Wax gourdmewgoB458
MELO3C008642Cucumber (Gy14) v1cgymeB321
MELO3C008642Cucurbita maxima (Rimu)cmameB178
MELO3C008642Cucurbita maxima (Rimu)cmameB739
MELO3C008642Cucurbita moschata (Rifu)cmomeB167
MELO3C008642Cucurbita moschata (Rifu)cmomeB726
MELO3C008642Cucumber (Chinese Long) v2cumeB137
MELO3C008642Watermelon (Charleston Gray)mewcgB369
MELO3C008642Cucurbita pepo (Zucchini)cpemeB106
MELO3C008642Cucurbita pepo (Zucchini)cpemeB780
MELO3C008642Bottle gourd (USVL1VR-Ls)lsimeB117
MELO3C008642Cucumber (Gy14) v2cgybmeB125
MELO3C008642Silver-seed gourdcarmeB0487
MELO3C008642Cucumber (Chinese Long) v3cucmeB144
MELO3C008642Watermelon (97103) v2mewmbB372