MELO3C008625 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008625
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Acyl-CoA binding protein, putative
Location	chr5 : 15221894 .. 15222115 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCGATGGCGAGGGCGAGCTCCGACTTGCAATATCCCGACCGGTTCTACATTGCAGCTTCTTATGCCGGTTTTGATGGATCACTAAAATCGTCTTCAAAGGCCCTCAGGTCTATGTTCTCCGATGAGGCCGCTTTGTTACTTTATGGCTTGTATCAGCAGGTACTACCACATGTTCTTACACCTGTGACTTACCGGTGCTGTTTCAGTTTGTGTTGA

mRNA sequence

ATGGCTGCGATGGCGAGGGCGAGCTCCGACTTGCAATATCCCGACCGGTTCTACATTGCAGCTTCTTATGCCGGTTTTGATGGATCACTAAAATCGTCTTCAAAGGCCCTCAGGTCTATGTTCTCCGATGAGGCCGCTTTGTTACTTTATGGCTTGTATCAGCAGGTACTACCACATGTTCTTACACCTGTGACTTACCGGTGCTGTTTCAGTTTGTGTTGA

Coding sequence (CDS)

ATGGCTGCGATGGCGAGGGCGAGCTCCGACTTGCAATATCCCGACCGGTTCTACATTGCAGCTTCTTATGCCGGTTTTGATGGATCACTAAAATCGTCTTCAAAGGCCCTCAGGTCTATGTTCTCCGATGAGGCCGCTTTGTTACTTTATGGCTTGTATCAGCAGGTACTACCACATGTTCTTACACCTGTGACTTACCGGTGCTGTTTCAGTTTGTGTTGA

Protein sequence

MAAMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQVLPHVLTPVTYRCCFSLC*

Homology

[Close]

BLAST of MELO3C008625 vs. Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-10
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1


Query: 1  MAAMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          MA M RASS L YP+RFY AASY G DGS +SS K L S FS++ +LLLY L+QQ
Sbjct: 1  MAHMVRASSGLSYPERFYAAASYVGLDGS-QSSVKQLSSKFSNDTSLLLYTLHQQ 54

[Close]

BLAST of MELO3C008625 vs. Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-09
Identity = 33/53 (62.26%), Postives = 36/53 (67.92%), Query Frame = 1


Query: 3  AMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          AM RA+S   YP+RFY AASY G DGS  SS+K + S F D+ ALLLY LYQQ
Sbjct: 2  AMPRATSGPAYPERFYAAASYVGLDGS-DSSAKNVISKFPDDTALLLYALYQQ 53

[Close]

BLAST of MELO3C008625 vs. TrEMBL
Match: A0A0A0LFW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030060 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-18
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 1  MAAMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          MAAMARASS LQYPDRFY AASYAGFDGS KSSSKALRS FSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C008625 vs. TrEMBL
Match: M5WQY4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002406mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.6e-14
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 3  AMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          AMARASS LQYP+RFY AASYAGFDGS +SSSKA+RS F+ E+AL+LY LYQQ
Sbjct: 2  AMARASSGLQYPERFYAAASYAGFDGSPRSSSKAVRSKFNSESALILYALYQQ 54

[Close]

BLAST of MELO3C008625 vs. TrEMBL
Match: D7U9T2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g02410 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-12
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 1


Query: 3  AMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          AMARASS L YPDRFY AASYAGFDGS  SSSK + S FS++ ALLLY LYQQ
Sbjct: 4  AMARASSGLAYPDRFYAAASYAGFDGSPNSSSKGVSSKFSNDVALLLYALYQQ 56

[Close]

BLAST of MELO3C008625 vs. TrEMBL
Match: A0A067EMH1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0066451mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-12
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 3  AMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          AMARASS L YP+RFY AASYAGFDGS  SS+K L S FS+++ALLLY LYQQ
Sbjct: 2  AMARASSGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQ 54

[Close]

BLAST of MELO3C008625 vs. TrEMBL
Match: V4T0M2_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100005042mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-12
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 3  AMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          AMARASS L YP+RFY AASYAGFDGS  SS+K L S FS+++ALLLY LYQQ
Sbjct: 2  AMARASSGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQ 54

[Close]

BLAST of MELO3C008625 vs. TAIR10
Match: AT5G27630.1 (AT5G27630.1 acyl-CoA binding protein 5)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-11
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1


Query: 1  MAAMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          MA M RASS L YP+RFY AASY G DGS +SS K L S FS++ +LLLY L+QQ
Sbjct: 1  MAHMVRASSGLSYPERFYAAASYVGLDGS-QSSVKQLSSKFSNDTSLLLYTLHQQ 54

[Close]

BLAST of MELO3C008625 vs. TAIR10
Match: AT3G05420.2 (AT3G05420.2 acyl-CoA binding protein 4)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-10
Identity = 33/53 (62.26%), Postives = 36/53 (67.92%), Query Frame = 1


Query: 3  AMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          AM RA+S   YP+RFY AASY G DGS  SS+K + S F D+ ALLLY LYQQ
Sbjct: 2  AMPRATSGPAYPERFYAAASYVGLDGS-DSSAKNVISKFPDDTALLLYALYQQ 53

[Close]

BLAST of MELO3C008625 vs. NCBI nr
Match: gi|449454077|ref|XP_004144782.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-18
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 1  MAAMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          MAAMARASS LQYPDRFY AASYAGFDGS KSSSKALRS FSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C008625 vs. NCBI nr
Match: gi|778666903|ref|XP_011648837.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-18
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 1  MAAMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          MAAMARASS LQYPDRFY AASYAGFDGS KSSSKALRS FSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C008625 vs. NCBI nr
Match: gi|659070286|ref|XP_008454347.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-18
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 1  MAAMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          MAAMARASS LQYPDRFY AASYAGFDGS KSSSKALRS FSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C008625 vs. NCBI nr
Match: gi|659070284|ref|XP_008454338.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-18
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 1  MAAMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          MAAMARASS LQYPDRFY AASYAGFDGS KSSSKALRS FSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C008625 vs. NCBI nr
Match: gi|659125410|ref|XP_008462673.1| (PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MAAMARASSDLQYPDRFYIAASYAGFDGSLKSSSKALRSMFSDEAALLLYGLYQQ 56
          MA M RASS LQYPDRFY AASYAGFDGS K SSKALRS FSDEAALLLYGLYQQ
Sbjct: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 55

The following BLAST results are available for this feature:

BLAST of MELO3C008625 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACBP5_ARATH	2.9e-10	63.64	Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE...	[more]
ACBP4_ARATH	4.1e-09	62.26	Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE...	[more]

BLAST of MELO3C008625 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFW3_CUCSA	2.6e-18	92.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030060 PE=4 SV=1	[more]
M5WQY4_PRUPE	8.6e-14	77.36	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002406mg PE=4 SV=1	[more]
D7U9T2_VITVI	2.1e-12	75.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g02410 PE=4 SV=...	[more]
A0A067EMH1_CITSI	6.2e-12	73.58	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0066451mg PE=4 ...	[more]
V4T0M2_9ROSI	6.2e-12	73.58	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100005042mg PE...	[more]

BLAST of MELO3C008625 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27630.1	1.6e-11	63.64	acyl-CoA binding protein 5	[more]
AT3G05420.2	2.3e-10	62.26	acyl-CoA binding protein 4	[more]

BLAST of MELO3C008625 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454077\|ref\|XP_004144782.1\|	3.7e-18	92.73	PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X1 [Cucumis sati...	[more]
gi\|778666903\|ref\|XP_011648837.1\|	3.7e-18	92.73	PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis sati...	[more]
gi\|659070286\|ref\|XP_008454347.1\|	3.7e-18	92.73	PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X2 [Cucumis...	[more]
gi\|659070284\|ref\|XP_008454338.1\|	3.7e-18	92.73	PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X1 [Cucumis...	[more]
gi\|659125410\|ref\|XP_008462673.1\|	1.6e-16	87.27	PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000062	fatty-acyl-CoA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU57482	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008625T1	MELO3C008625T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU57482	MU57482	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008625	Watermelon (97103) v2	mewmbB372
MELO3C008625	Wax gourd	mewgoB458
MELO3C008625	Cucumber (Gy14) v1	cgymeB321
MELO3C008625	Cucurbita maxima (Rimu)	cmameB178
MELO3C008625	Cucurbita maxima (Rimu)	cmameB739
MELO3C008625	Cucurbita moschata (Rifu)	cmomeB167
MELO3C008625	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008625	Wild cucumber (PI 183967)	cpimeB142
MELO3C008625	Cucumber (Chinese Long) v2	cumeB137
MELO3C008625	Watermelon (Charleston Gray)	mewcgB369
MELO3C008625	Watermelon (97103) v1	mewmB428
MELO3C008625	Cucurbita pepo (Zucchini)	cpemeB106
MELO3C008625	Cucurbita pepo (Zucchini)	cpemeB780
MELO3C008625	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008625	Cucumber (Gy14) v2	cgybmeB125
MELO3C008625	Silver-seed gourd	carmeB0487
MELO3C008625	Cucumber (Chinese Long) v3	cucmeB144