MELO3C008615 (gene) Melon (DHL92) v3.5.1

NameMELO3C008615
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPlant thionin family protein
Locationchr5 : 14932723 .. 14933088 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAAGATGTGCTGGTAAACATGTTCACAAATGGGCTTGACCTAGTCAGCTGTATGGAGGTTTTCTCCATGAGAATTGTGGGCCTCAAGGATATGATGGACGCAGCCCGGTTAGCAGAGGAAAAACTTGAAACGGCCTGCACGGCCCAAGGCTCATATGGGAAAGATGAGAAACCAGCCCACAAACCCACGATAAAGAATGCCGACAGTTATACCACCTGTATGGTTACCCTAGACGAAAAAGTCCCCAACGGAGGAACAAACCCTAACTTGATGGGAGCATCTAATCAGCAAGAAATGCCTTTTCAAAGGTGGACAAACTCCGAATTGCAAGCTCGAAGAGATAAGGGTTTATGCTACTAG

mRNA sequence

ATGGCCGAAGATGTGCTGGTAAACATGTTCACAAATGGGCTTGACCTAGTCAGCTGTATGGAGGTTTTCTCCATGAGAATTGTGGGCCTCAAGGATATGATGGACGCAGCCCGGTTAGCAGAGGAAAAACTTGAAACGGCCTGCACGGCCCAAGGCTCATATGGGAAAGATGAGAAACCAGCCCACAAACCCACGATAAAGAATGCCGACAGTTATACCACCTGTATGGTTACCCTAGACGAAAAAGTCCCCAACGGAGGAACAAACCCTAACTTGATGGGAGCATCTAATCAGCAAGAAATGCCTTTTCAAAGGTGGACAAACTCCGAATTGCAAGCTCGAAGAGATAAGGGTTTATGCTACTAG

Coding sequence (CDS)

ATGGCCGAAGATGTGCTGGTAAACATGTTCACAAATGGGCTTGACCTAGTCAGCTGTATGGAGGTTTTCTCCATGAGAATTGTGGGCCTCAAGGATATGATGGACGCAGCCCGGTTAGCAGAGGAAAAACTTGAAACGGCCTGCACGGCCCAAGGCTCATATGGGAAAGATGAGAAACCAGCCCACAAACCCACGATAAAGAATGCCGACAGTTATACCACCTGTATGGTTACCCTAGACGAAAAAGTCCCCAACGGAGGAACAAACCCTAACTTGATGGGAGCATCTAATCAGCAAGAAATGCCTTTTCAAAGGTGGACAAACTCCGAATTGCAAGCTCGAAGAGATAAGGGTTTATGCTACTAG

Protein sequence

MAEDVLVNMFTNGLDLVSCMEVFSMRIVGLKDMMDAARLAEEKLETACTAQGSYGKDEKPAHKPTIKNADSYTTCMVTLDEKVPNGGTNPNLMGASNQQEMPFQRWTNSELQARRDKGLCY*
BLAST of MELO3C008615 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1

Query: 1   MAEDVLVNMFTNGLDLVSCMEVFSMRIVGLKDMMDAARLAEEKLETACTAQGSYGKDEKP 60
           MAEDVLV  FT GLD V   EVF+MR+VGL+DM+D ARLAEEKLE A  +   Y KD KP
Sbjct: 207 MAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDVARLAEEKLEIARASHSPYAKDGKP 266

Query: 61  AHKPTIKNADSYTTCMVTLDEKVP---NGGTNP 91
           A K   KN++  +T +VTL E++P   N  +NP
Sbjct: 267 AQKHAPKNSEIPSTKIVTLAERIPTSLNQASNP 299

BLAST of MELO3C008615 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 1

Query: 1   MAEDVLVNMFTNGLDLVSCMEVFSMRIVGLKDMMDAARLAEEKLETACTAQGSYGKD-EK 60
           MAE+VL   FTNGLD     EVF+MR+VGL+D+M+AA+LAEEK E   T  G Y     K
Sbjct: 179 MAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEAAQLAEEKAEV--TKGGPYPYPYSK 238

Query: 61  PAHKPTI----KNADSYTTCMVTLDEKVPNGGTNPN-----LMGASNQQEMPFQRWTNSE 120
            A K  +    K   S  T MVTL +KV N  +N N      +G   ++E  ++RW +S+
Sbjct: 239 EAAKTNLGSSPKTFGSPPTKMVTLAKKVVNQTSNSNTSQSHTVGGGGRREPSYRRWIDSK 298

Query: 121 LQARRDKGLCY 122
           LQAR++KGLCY
Sbjct: 299 LQARKEKGLCY 307

BLAST of MELO3C008615 vs. NCBI nr
Match: gi|307136196|gb|ADN34034.1| (gypsy/ty3 element polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1

Query: 1   MAEDVLVNMFTNGLDLVSCMEVFSMRIVGLKDMMDAARLAEEKLETACTAQGSYGKDEKP 60
           MAEDVLV  FT GLD V   EVF+MR+VGL+DM+D ARLAEEKLE A  +   Y KD KP
Sbjct: 207 MAEDVLVGTFTKGLDPVIRTEVFAMRVVGLEDMVDVARLAEEKLEIARASHSPYAKDGKP 266

Query: 61  AHKPTIKNADSYTTCMVTLDEKVP---NGGTNP 91
           A K   KN++  +T +VTL E++P   N  +NP
Sbjct: 267 AQKHAPKNSEIPSTKIVTLAERIPTSLNQASNP 299

BLAST of MELO3C008615 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 1

Query: 1   MAEDVLVNMFTNGLDLVSCMEVFSMRIVGLKDMMDAARLAEEKLETACTAQGSYGKD-EK 60
           MAE+VL   FTNGLD     EVF+MR+VGL+D+M+AA+LAEEK E   T  G Y     K
Sbjct: 179 MAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEAAQLAEEKAEV--TKGGPYPYPYSK 238

Query: 61  PAHKPTI----KNADSYTTCMVTLDEKVPNGGTNPN-----LMGASNQQEMPFQRWTNSE 120
            A K  +    K   S  T MVTL +KV N  +N N      +G   ++E  ++RW +S+
Sbjct: 239 EAAKTNLGSSPKTFGSPPTKMVTLAKKVVNQTSNSNTSQSHTVGGGGRREPSYRRWIDSK 298

Query: 121 LQARRDKGLCY 122
           LQAR++KGLCY
Sbjct: 299 LQARKEKGLCY 307

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GC35_CUCME1.1e-1655.91Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GC18_CUCME1.4e-1646.56Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307136196|gb|ADN34034.1|1.5e-1655.91gypsy/ty3 element polyprotein [Cucumis melo subsp. melo][more]
gi|307136175|gb|ADN34016.1|2.0e-1646.56ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008615T1MELO3C008615T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None