MELO3C008607.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C008607.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionIntegrase
Locationchr05 : 14386496 .. 14386729 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTGTCCCAAGTAAATGTCAGAGGCAACTCTATTCAAGATTTGAAGCATGCTGATGAGATAGGATGCGTGGGATATGGCGGTGCTCACACCACTAATGCACGTCTGCATAACACAAAAAATGTAGCATATGTAAAGAATGGCCCCTATTCCAACACATACAATTGGGGATGGAGAGATCACCTTAACTTCAGTTGGAGAGGTCAAGGTCAGAACAGTCAAGGGCGATAA

mRNA sequence

ATGGCATTGTCCCAAGTAAATGTCAGAGGCAACTCTATTCAAGATTTGAAGCATGCTGATGAGATAGGATGCGTGGGATATGGCGGTGCTCACACCACTAATGCACGTCTGCATAACACAAAAAATGTAGCATATGTAAAGAATGGCCCCTATTCCAACACATACAATTGGGGATGGAGAGATCACCTTAACTTCAGTTGGAGAGGTCAAGGTCAGAACAGTCAAGGGCGATAA

Coding sequence (CDS)

ATGGCATTGTCCCAAGTAAATGTCAGAGGCAACTCTATTCAAGATTTGAAGCATGCTGATGAGATAGGATGCGTGGGATATGGCGGTGCTCACACCACTAATGCACGTCTGCATAACACAAAAAATGTAGCATATGTAAAGAATGGCCCCTATTCCAACACATACAATTGGGGATGGAGAGATCACCTTAACTTCAGTTGGAGAGGTCAAGGTCAGAACAGTCAAGGGCGATAA

Protein sequence

MALSQVNVRGNSIQDLKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQNSQGR
BLAST of MELO3C008607.2 vs. NCBI nr
Match: XP_017233063.1 (PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus])

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 16  LKHADEIGCVGYGGAHTTNARLHNTKNVAYVKN----GPYSNTYNWGWRDHLNFSWRGQG 75
           +     + CV  G AHT ++   N ++V Y+ N    GPYSNTYN  WR H NFSW  QG
Sbjct: 321 INQTKNVSCVFCGEAHTYDSCPSNPESVFYMGNQNKAGPYSNTYNQSWRQHPNFSWSNQG 380

BLAST of MELO3C008607.2 vs. NCBI nr
Match: KGN57762.1 (hypothetical protein Csa_3G282990 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 5.6e-05
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 23  GCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQN 74
           G  G    H  +A   + + +AYVK+ PYSN YN GWRDHLNF W GQ QN
Sbjct: 53  GSEGNVTPHDRDACPMSKETIAYVKHDPYSNAYNEGWRDHLNFRWGGQDQN 103

BLAST of MELO3C008607.2 vs. NCBI nr
Match: XP_017239618.1 (PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus])

HSP 1 Score: 56.2 bits (134), Expect = 5.6e-05
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 0

Query: 16  LKHADEIGCVGYGGAHTTNARLHNTKNVAYV----KNGPYSNTYNWGWRDHLNFSWRGQG 74
           +     + CV  G AHT ++   N ++V Y+    K GPYSNTYN  WR H NFSW  QG
Sbjct: 321 INQTKNVSCVFCGEAHTYDSCPSNPESVFYMGNQNKGGPYSNTYNQSWRQHPNFSWSNQG 380

BLAST of MELO3C008607.2 vs. NCBI nr
Match: XP_017217165.1 (PREDICTED: uncharacterized protein LOC108194733 [Daucus carota subsp. sativus])

HSP 1 Score: 55.5 bits (132), Expect = 9.5e-05
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 0

Query: 16  LKHADEIGCVGYGGAHTTNARLHNTKNVAYV----KNGPYSNTYNWGWRDHLNFSWRGQG 75
           +     + CV  G AHT ++   N ++V Y+    K GPYSNTYN  WR H NF W  QG
Sbjct: 216 INQTKNVSCVFCGEAHTYDSCPSNPESVFYMGNQNKGGPYSNTYNQSWRQHPNFFWSNQG 275

BLAST of MELO3C008607.2 vs. NCBI nr
Match: XP_017227786.1 (PREDICTED: uncharacterized protein LOC108203384 [Daucus carota subsp. sativus])

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 27/60 (45.00%), Postives = 34/60 (56.67%), Query Frame = 0

Query: 16 LKHADEIGCVGYGGAHTTNARLHNTKNVAYV----KNGPYSNTYNWGWRDHLNFSWRGQG 72
          +     + CV  G AHT ++   N ++V Y+    K GPYSNTYN  WR H NFSW  QG
Sbjct: 24 INQTKNVSCVFCGEAHTYDSCPSNPESVFYMGNQNKGGPYSNTYNQSWRQHPNFSWSNQG 83

BLAST of MELO3C008607.2 vs. TrEMBL
Match: tr|A0A0A0LAQ9|A0A0A0LAQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G282990 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-05
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 23  GCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQN 74
           G  G    H  +A   + + +AYVK+ PYSN YN GWRDHLNF W GQ QN
Sbjct: 53  GSEGNVTPHDRDACPMSKETIAYVKHDPYSNAYNEGWRDHLNFRWGGQDQN 103

BLAST of MELO3C008607.2 vs. TrEMBL
Match: tr|U5CZQ0|U5CZQ0_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00005610 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.1e-04
Identity = 29/63 (46.03%), Postives = 33/63 (52.38%), Query Frame = 0

Query: 21 EIGCVGYGGAHTTNARLHNTKNVAYV-------KNGPYSNTYNWGWRDHLNFSWRGQGQN 77
          EI CV  G  HT      N  +V YV        N PYSN+YN  W+ H NFSW GQG +
Sbjct: 27 EISCVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQGAS 86

BLAST of MELO3C008607.2 vs. TrEMBL
Match: tr|A0A0J8BBW5|A0A0J8BBW5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g126420 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.0e-04
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 0

Query: 28  GGAHTTNARLHNTKNVAYV-------KNGPYSNTYNWGWRDHLNFSWRGQGQNS 75
           GGAH TN  + N +   +V        N PYSNT+N GWR+H NFSWR QGQ +
Sbjct: 93  GGAHLTNECI-NVEQAQFVSNFNRPPNNDPYSNTFNPGWRNHPNFSWRNQGQQN 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_017233063.12.5e-0546.03PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus][more]
KGN57762.15.6e-0552.94hypothetical protein Csa_3G282990 [Cucumis sativus][more]
XP_017239618.15.6e-0545.16PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus][more]
XP_017217165.19.5e-0544.44PREDICTED: uncharacterized protein LOC108194733 [Daucus carota subsp. sativus][more]
XP_017227786.11.6e-0445.00PREDICTED: uncharacterized protein LOC108203384 [Daucus carota subsp. sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LAQ9|A0A0A0LAQ9_CUCSA3.7e-0552.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G282990 PE=4 SV=1[more]
tr|U5CZQ0|U5CZQ0_AMBTC4.1e-0446.03Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00005610... [more]
tr|A0A0J8BBW5|A0A0J8BBW5_BETVU7.0e-0450.00Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g12642... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008607.2.1MELO3C008607.2.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None