MELO3C008607 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008607
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProteasome subunit beta
Locationchr5 : 14373517 .. 14373750 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTGTCCCAAGTAAATGTCAGAGGCAACTCTATTCAAGATTTGAAGCATGCTGATGAGATAGGATGCGTGGGATATGGCGGTGCTCACACCACTAATGCACGTCTGCATAACACAAAAAATGTAGCATATGTAAAGAATGGCCCCTATTCCAACACATACAATTGGGGATGGAGAGATCACCTTAACTTCAGTTGGAGAGGTCAAGGTCAGAACAGTCAAGGGCGATAA

mRNA sequence

ATGGCATTGTCCCAAGTAAATGTCAGAGGCAACTCTATTCAAGATTTGAAGCATGCTGATGAGATAGGATGCGTGGGATATGGCGGTGCTCACACCACTAATGCACGTCTGCATAACACAAAAAATGTAGCATATGTAAAGAATGGCCCCTATTCCAACACATACAATTGGGGATGGAGAGATCACCTTAACTTCAGTTGGAGAGGTCAAGGTCAGAACAGTCAAGGGCGATAA

Coding sequence (CDS)

ATGGCATTGTCCCAAGTAAATGTCAGAGGCAACTCTATTCAAGATTTGAAGCATGCTGATGAGATAGGATGCGTGGGATATGGCGGTGCTCACACCACTAATGCACGTCTGCATAACACAAAAAATGTAGCATATGTAAAGAATGGCCCCTATTCCAACACATACAATTGGGGATGGAGAGATCACCTTAACTTCAGTTGGAGAGGTCAAGGTCAGAACAGTCAAGGGCGATAA

Protein sequence

MALSQVNVRGNSIQDLKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQNSQGR*
Homology
[Close]
BLAST of MELO3C008607 vs. TrEMBL
Match: A0A0A0LAQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G282990 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 1 

Query: 23  GCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQN 74
           G  G    H  +A   + + +AYVK+ PYSN YN GWRDHLNF W GQ QN
Sbjct: 53  GSEGNVTPHDRDACPMSKETIAYVKHDPYSNAYNEGWRDHLNFRWGGQDQN 103

[Close]
BLAST of MELO3C008607 vs. NCBI nr
Match: gi|700202629|gb|KGN57762.1| (hypothetical protein Csa_3G282990 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 1 

Query: 23  GCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQN 74
           G  G    H  +A   + + +AYVK+ PYSN YN GWRDHLNF W GQ QN
Sbjct: 53  GSEGNVTPHDRDACPMSKETIAYVKHDPYSNAYNEGWRDHLNFRWGGQDQN 103

The following BLAST results are available for this feature:
BLAST of MELO3C008607 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAQ9_CUCSA1.8e-0652.94Uncharacterized protein OS=Cucumis sativus GN=Csa_3G282990 PE=4 SV=1[more]
BLAST of MELO3C008607 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202629|gb|KGN57762.1|2.6e-0652.94hypothetical protein Csa_3G282990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008607T1MELO3C008607T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008607Cucurbita moschata (Rifu)cmomeB167
MELO3C008607Cucurbita moschata (Rifu)cmomeB726
MELO3C008607Wild cucumber (PI 183967)cpimeB142
MELO3C008607Cucumber (Chinese Long) v2cumeB132
MELO3C008607Cucumber (Chinese Long) v2cumeB137
MELO3C008607Watermelon (Charleston Gray)mewcgB369
MELO3C008607Watermelon (97103) v1mewmB428
MELO3C008607Cucurbita pepo (Zucchini)cpemeB780
MELO3C008607Bottle gourd (USVL1VR-Ls)lsimeB117
MELO3C008607Cucumber (Gy14) v2cgybmeB124
MELO3C008607Silver-seed gourdcarmeB0487
MELO3C008607Cucumber (Chinese Long) v3cucmeB144
MELO3C008607Wax gourdmewgoB455
MELO3C008607Wax gourdmewgoB458
MELO3C008607Cucumber (Gy14) v1cgymeB464
MELO3C008607Cucurbita maxima (Rimu)cmameB178
MELO3C008607Cucurbita maxima (Rimu)cmameB739