MELO3C008595 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008595
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase
Location	chr5 : 14006192 .. 14006665 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGATACATAATATATACGATTTACCTATTGTACCTCCACCAGTTCATAGGGAACGTTTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGTCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCAGTATAGGATATTATGATGCAGTGGTCGGTCCATTGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGTATGGACACGGACGTGGCTATGGGGAACATAATGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAAAGAACCAAGAGGATCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCGAAATCGACAATGTTCGGGTTGTGGAACACATTGA

mRNA sequence

ATGGAGAAGATACATAATATATACGATTTACCTATTGTACCTCCACCAGTTCATAGGGAACGTTTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGTCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCAGTATAGGATATTATGATGCAGTGGTCGGTCCATTGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGTATGGACACGGACGTGGCTATGGGGAACATAATGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAAAGAACCAAGAGGATCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCGAAATCGACAATGTTCGGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGGAGAAGATACATAATATATACGATTTACCTATTGTACCTCCACCAGTTCATAGGGAACGTTTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGTCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCAGTATAGGATATTATGATGCAGTGGTCGGTCCATTGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGTATGGACACGGACGTGGCTATGGGGAACATAATGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAAAGAACCAAGAGGATCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCGAAATCGACAATGTTCGGGTTGTGGAACACATTGA

Protein sequence

MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH*

Homology

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BLAST of MELO3C008595 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35
Identity = 94/188 (50.00%), Postives = 118/188 (62.77%), Query Frame = 1


Query: 1   MEKIHNIYDLPIVPPPVHRERFRVEEAE-LDEVYHNVEEVPPTTQTQSQT--GYGSPMTM 60
           ME IH +YD+PIVP PV R R  V+E++ L+EV  + EEVPP TQTQ+Q+   Y SP+ M
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MPTFGAGYCDSEVSI------GYYDAVVGPLSS-----YMDVG--PSTSYMYGHGRGYGE 120
           MPTFG  Y DS V        GYY++  G  S+     Y D+G  PS+SYM+GHGRG GE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HNEYLYHEAPTDV---SDRQEY------------QQEPKNQEDREQHRVQSRRRQPARNR 158
           HNEYLY++ P  V   SD Q+             QQ+ +N E+ +Q RVQ RRRQ A+NR
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQQQRVQIRRRQLAKNR 256

The following BLAST results are available for this feature:

BLAST of MELO3C008595 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069376\|ref\|XP_008449513.1\|	5.5e-35	50.00	PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008595T1	MELO3C008595T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008595	Watermelon (97103) v2	mewmbB374
MELO3C008595	Wax gourd	mewgoB455
MELO3C008595	Wax gourd	mewgoB458
MELO3C008595	Cucumber (Gy14) v1	cgymeB464
MELO3C008595	Cucurbita maxima (Rimu)	cmameB739
MELO3C008595	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008595	Wild cucumber (PI 183967)	cpimeB142
MELO3C008595	Cucumber (Chinese Long) v2	cumeB132
MELO3C008595	Cucumber (Chinese Long) v2	cumeB137
MELO3C008595	Watermelon (Charleston Gray)	mewcgB369
MELO3C008595	Watermelon (Charleston Gray)	mewcgB371
MELO3C008595	Watermelon (97103) v1	mewmB428
MELO3C008595	Watermelon (97103) v1	mewmB429
MELO3C008595	Cucurbita pepo (Zucchini)	cpemeB101
MELO3C008595	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008595	Cucumber (Gy14) v2	cgybmeB124
MELO3C008595	Silver-seed gourd	carmeB0237
MELO3C008595	Cucumber (Chinese Long) v3	cucmeB144