MELO3C008586 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008586
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMembrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain
Locationchr5 : 13858729 .. 13860773 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACGTGGAGTAGGAGAGTCAGCATCCCTCGTTGGTCGGAGTTTGCCCTCTCCGCCGAAAAATGGCAACGTCGAAGCTCTGTACTCACCTTCGCCGTCTTCGTCCGTCTCGTTTTTACTCCATCTCTTTCCTTTCTTGTCCTCTGCCCTTTCGACTTCACGAAGCTCACACACTCTCAAGCTCACACCATCAACCATTCACCACTCCCTCCCATCGTTTTGATCCTCATATAAGTTCCGTTAGTGCTCTCACCGCATTCTCCTCTCGGTACTTCTGGACTCGTTCAAACGATGATTCAGAGTTCGAACAAAGTGTTGAATCAAGACACCTCTCGAACGACGATACGGGAATCCTCCAGTCGGGAATTCAAGACTTGGAACTTGGAGGAGTTGTTGAAGAAGTCATTGGTACGACTACGGTGGAGGATTCAATTTTACCCATTCAGCAACTTACTTCGATTCTGGATGGTTTCCATCAGTATACCGGTATGCCCTGGTGAGCATTTCAATACTTCTCATATGATTCTGGAGGAATATTTAGAAGAGTGTACGGAGCGTATGGATTTTGATCTTTTCTATTTCCATTTTGAACATCTTGAATCGTGTTTTGGTCATAGTGTCTTTCTTTTATTTGATATCGGTATATGTCATGGCCTATTTAACGAGCTCTGTCTTTGATTGTCGAGTAGTTTTCTGTTACTTTCCTCAAGCTCTTCTATATAAGAGAGTTTCTATAGCCGCATTGTATTGTCATGGATAACAATAAAATACTCATCCCATTACATTGTTATACTCCGCGTGTGTACTTGAGTTAGATGCACAAAATTTTAATGTTTTCGTTGTCTAACAGTTGGGTCTTTTTGGGGTGAGGAAAGATTGTGGACGGTGGTTTCTAGTAAGATTGACAGCTTCGATTTTGGTTCTCTTGGAAATATTAAAATTTTAATTTACTTCGCTGATCCTTTTGATTTCAGGTGGGCAGTTATTGCTTCATCAACTTTAGCTCTCAGATTTACGTTGCTTCCCTTACTCATTGTTCAACTCAACAAGTTGAAAAGGATTGGTGAATTATTTCCAAAGTGTAAGTTTCCAAAGTAACGAATTGATTTATTTCTCTTTACTGCTTGACTCATTAAAGTTTTTGGCTTGGGTTGTTGAACTCCTGAATGAATAAAGGAATAATCTAATTGTATTGTTAATTATGGTGGAACTCCTGCAGTCGTAATTGGGCTGACGGGTGATTATGTAAAAAAAGTTTGAAGAATCACACACTCTTCAATGAAACCACATCTTTATCCTATCTCAATGACAATAAAAGGAAAAACCAACCAAAGAGTAGGTTGAAGGAAACATACTAAGGAACACTTGCATACTATAAACAGAAAATGAATCCTGTTAGCCAGCCATCGTGATGTTTGTGCTGTTGCAGAGTTCCTCCTCCATCTTCCTTTTAGTGATAAAGGCCGTTTTTTGTGGTTTGGGGGGTTGTGTGGTATGCTTGGTGCGGGGAGAGGAATAATAGAGTTTTCATAGGGAGGGATAGGGACCCTTACGAGGTTTGGTCCTTAGTTAGATTTCATGTTTCCCTTTTGGTCTTGGTTTGAAAACTTGTTTGTAACTATTCACTCGGTAACATTTTACTTACTTGGAACCCCTTCCTTTAGTTGGAGTGTTCTGGTGGGCTTGTTTTTTTGTATGCCCTTGTATTCCTTCTTTTTTTTCTCAATGGAAGTTGCTTTCATTTAAAAAAAAAATTGAAAGAAAATTGATACAATTATTAGTTGGGAGTTCTAATTTATACATCCCCAAAGTTTAGGGGGATAAGTTAATATTTTCCCTTAATTTTATTATCAGTTAGACTGATTTAAAGATATTCACGCACTCACACACAATAAAAATACAATTTAATTGTTCACAGTTAAATTGTTAATATAATCATCATTACCTTATTTTTTGTTTAACACAATCACTTTAGTTTGACTTTTATTTGCATTTCTCAAAGTGCCACCTCCACTGCCACCACCTCTTTCGAGACGGAGTTACATCG

mRNA sequence

TACGTGGAGTAGGAGAGTCAGCATCCCTCGTTGGTCGGAGTTTGCCCTCTCCGCCGAAAAATGGCAACGTCGAAGCTCTGTACTCACCTTCGCCGTCTTCGTCCGTCTCGTTTTTACTCCATCTCTTTCCTTTCTTGTCCTCTGCCCTTTCGACTTCACGAAGCTCACACACTCTCAAGCTCACACCATCAACCATTCACCACTCCCTCCCATCGTTTTGATCCTCATATAAGTTCCGTTAGTGCTCTCACCGCATTCTCCTCTCGGTACTTCTGGACTCGTTCAAACGATGATTCAGAGTTCGAACAAAGTGTTGAATCAAGACACCTCTCGAACGACGATACGGGAATCCTCCAGTCGGGAATTCAAGACTTGGAACTTGGAGGAGTTGTTGAAGAAGTCATTGGTACGACTACGGTGGAGGATTCAATTTTACCCATTCAGCAACTTACTTCGATTCTGGATGGTTTCCATCAGTATACCGGTGGGCAGTTATTGCTTCATCAACTTTAGCTCTCAGATTTACGTTGCTTCCCTTACTCATTGTTCAACTCAACAAGTTGAAAAGGATTGGTGAATTATTTCCAAAGTTGCCACCTCCACTGCCACCACCTCTTTCGAGACGGAGTTACATCG

Coding sequence (CDS)

ATGGCAACGTCGAAGCTCTGTACTCACCTTCGCCGTCTTCGTCCGTCTCGTTTTTACTCCATCTCTTTCCTTTCTTGTCCTCTGCCCTTTCGACTTCACGAAGCTCACACACTCTCAAGCTCACACCATCAACCATTCACCACTCCCTCCCATCGTTTTGATCCTCATATAAGTTCCGTTAGTGCTCTCACCGCATTCTCCTCTCGGTACTTCTGGACTCGTTCAAACGATGATTCAGAGTTCGAACAAAGTGTTGAATCAAGACACCTCTCGAACGACGATACGGGAATCCTCCAGTCGGGAATTCAAGACTTGGAACTTGGAGGAGTTGTTGAAGAAGTCATTGGTACGACTACGGTGGAGGATTCAATTTTACCCATTCAGCAACTTACTTCGATTCTGGATGGTTTCCATCAGTATACCGGTGGGCAGTTATTGCTTCATCAACTTTAG

Protein sequence

MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSVSALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTVEDSILPIQQLTSILDGFHQYTGGQLLLHQL*
Homology
[Close]
BLAST of MELO3C008586 vs. TrEMBL
Match: A0A0A0LJT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094350 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.0e-61
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 1 

Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSIS LS PLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISS+
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISSLSSPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSL 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQ----SVESRHLSNDDTGILQSGIQDLELGGVVEEVIG 120
           SA TAFSSR FWTRSNDDSEF++     VES HLSNDDT     GIQDLELGGVVEEVIG
Sbjct: 61  SAFTAFSSRSFWTRSNDDSEFDRIAHYGVESSHLSNDDT-----GIQDLELGGVVEEVIG 120

Query: 121 TTTVEDSILPIQQLTSILDGFHQYTG 143
            T VE+SILPIQQLTSILDGFHQYTG
Sbjct: 121 ATAVENSILPIQQLTSILDGFHQYTG 141

[Close]
BLAST of MELO3C008586 vs. TrEMBL
Match: A0A067KCT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18574 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 57/147 (38.78%), Postives = 78/147 (53.06%), Query Frame = 1 

Query: 1   MATSKLC-THLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHI-S 60
           MA+SKL  +HLRR  P  +  +S LSC      H     S    QP  TP++   PH  +
Sbjct: 1   MASSKLLLSHLRRSYPLSY--LSTLSCGSIS--HLLTNPSPIRSQPPITPNNSLRPHFFN 60

Query: 61  SVSALTAFSSRYFWTRSNDDSEF--EQSVESRHLSNDDTGILQSGIQDLELGGVVEEVI- 120
           S+ A    + R F TRSNDDS F  + + ES+               D E+ GV+E V+ 
Sbjct: 61  SLFAFHFLNGRSFSTRSNDDSGFFVDSATESKPT-------------DFEVDGVIESVVN 120

Query: 121 GTTTVEDSILPIQQLTSILDGFHQYTG 143
           G++  E+SILP++ L S+LDGFH  TG
Sbjct: 121 GSSGGEESILPVRALISLLDGFHNLTG 130

[Close]
BLAST of MELO3C008586 vs. NCBI nr
Match: gi|659082281|ref|XP_008441758.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120
           SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV
Sbjct: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120

Query: 121 EDSILPIQQLTSILDGFHQYTG 143
           EDSILPIQQLTSILDGFHQYTG
Sbjct: 121 EDSILPIQQLTSILDGFHQYTG 142

[Close]
BLAST of MELO3C008586 vs. NCBI nr
Match: gi|659082283|ref|XP_008441760.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120
           SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV
Sbjct: 61  SALTAFSSRYFWTRSNDDSEFEQSVESRHLSNDDTGILQSGIQDLELGGVVEEVIGTTTV 120

Query: 121 EDSILPIQQLTSILDGFHQYTG 143
           EDSILPIQQLTSILDGFHQYTG
Sbjct: 121 EDSILPIQQLTSILDGFHQYTG 142

[Close]
BLAST of MELO3C008586 vs. NCBI nr
Match: gi|449442253|ref|XP_004138896.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 1 

Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSIS LS PLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISS+
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISSLSSPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSL 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQ----SVESRHLSNDDTGILQSGIQDLELGGVVEEVIG 120
           SA TAFSSR FWTRSNDDSEF++     VES HLSNDDT     GIQDLELGGVVEEVIG
Sbjct: 61  SAFTAFSSRSFWTRSNDDSEFDRIAHYGVESSHLSNDDT-----GIQDLELGGVVEEVIG 120

Query: 121 TTTVEDSILPIQQLTSILDGFHQYTG 143
            T VE+SILPIQQLTSILDGFHQYTG
Sbjct: 121 ATAVENSILPIQQLTSILDGFHQYTG 141

[Close]
BLAST of MELO3C008586 vs. NCBI nr
Match: gi|700206225|gb|KGN61344.1| (hypothetical protein Csa_2G094350 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 1 

Query: 1   MATSKLCTHLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSV 60
           MATSKLCTHLRRLRPSRFYSIS LS PLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISS+
Sbjct: 1   MATSKLCTHLRRLRPSRFYSISSLSSPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHISSL 60

Query: 61  SALTAFSSRYFWTRSNDDSEFEQ----SVESRHLSNDDTGILQSGIQDLELGGVVEEVIG 120
           SA TAFSSR FWTRSNDDSEF++     VES HLSNDDT     GIQDLELGGVVEEVIG
Sbjct: 61  SAFTAFSSRSFWTRSNDDSEFDRIAHYGVESSHLSNDDT-----GIQDLELGGVVEEVIG 120

Query: 121 TTTVEDSILPIQQLTSILDGFHQYTG 143
            T VE+SILPIQQLTSILDGFHQYTG
Sbjct: 121 ATAVENSILPIQQLTSILDGFHQYTG 141

[Close]
BLAST of MELO3C008586 vs. NCBI nr
Match: gi|802667049|ref|XP_012081302.1| (PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas])

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 57/147 (38.78%), Postives = 78/147 (53.06%), Query Frame = 1 

Query: 1   MATSKLC-THLRRLRPSRFYSISFLSCPLPFRLHEAHTLSSSHHQPFTTPSHRFDPHI-S 60
           MA+SKL  +HLRR  P  +  +S LSC      H     S    QP  TP++   PH  +
Sbjct: 1   MASSKLLLSHLRRSYPLSY--LSTLSCGSIS--HLLTNPSPIRSQPPITPNNSLRPHFFN 60

Query: 61  SVSALTAFSSRYFWTRSNDDSEF--EQSVESRHLSNDDTGILQSGIQDLELGGVVEEVI- 120
           S+ A    + R F TRSNDDS F  + + ES+               D E+ GV+E V+ 
Sbjct: 61  SLFAFHFLNGRSFSTRSNDDSGFFVDSATESKPT-------------DFEVDGVIESVVN 120

Query: 121 GTTTVEDSILPIQQLTSILDGFHQYTG 143
           G++  E+SILP++ L S+LDGFH  TG
Sbjct: 121 GSSGGEESILPVRALISLLDGFHNLTG 130

The following BLAST results are available for this feature:
BLAST of MELO3C008586 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJT6_CUCSA1.0e-6185.62Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094350 PE=4 SV=1[more]
A0A067KCT5_JATCU1.5e-0938.78Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18574 PE=4 SV=1[more]
BLAST of MELO3C008586 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082281|ref|XP_008441758.1|1.8e-75100.00PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X1 [Cucumis melo][more]
gi|659082283|ref|XP_008441760.1|1.8e-75100.00PREDICTED: ALBINO3-like protein 2, chloroplastic isoform X2 [Cucumis melo][more]
gi|449442253|ref|XP_004138896.1|1.5e-6185.62PREDICTED: ALBINO3-like protein 2, chloroplastic [Cucumis sativus][more]
gi|700206225|gb|KGN61344.1|1.5e-6185.62hypothetical protein Csa_2G094350 [Cucumis sativus][more]
gi|802667049|ref|XP_012081302.1|2.2e-0938.78PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051205 protein insertion into membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008586T1MELO3C008586T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008586Csa2G094350Cucumber (Chinese Long) v2cumeB132
MELO3C008586Cla002049Watermelon (97103) v1mewmB429
MELO3C008586ClCG11G007440Watermelon (Charleston Gray)mewcgB371
MELO3C008586Cucsa.277790Cucumber (Gy14) v1cgymeB464
MELO3C008586Lsi11G009440Bottle gourd (USVL1VR-Ls)lsimeB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008586Watermelon (97103) v2mewmbB374
MELO3C008586Wax gourdmewgoB455
MELO3C008586Cucurbita maxima (Rimu)cmameB739
MELO3C008586Cucurbita moschata (Rifu)cmomeB726
MELO3C008586Wild cucumber (PI 183967)cpimeB142
MELO3C008586Cucurbita pepo (Zucchini)cpemeB101
MELO3C008586Cucumber (Gy14) v2cgybmeB124
MELO3C008586Silver-seed gourdcarmeB0237
MELO3C008586Cucumber (Chinese Long) v3cucmeB144