MELO3C008570 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008570
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein of unknown function (DUF679)
Location	chr5 : 13333361 .. 13333570 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTCCGCCGTTGAAAAAACCCTTACCGGCATCAGAAACCTAATTCGTCTCCTCCCCACCGGCACCGTCTTTCTTTTCCAATTCCTCAGTCCAATCCTCACCAACAGCGGCTACCGCGAACCAATCAACAAAAAAGGCAGAGAGATAAAGAAGAAGAACAAAACGTTGTACTCGTTCTTCCTTGGGCGAAAGAAAATAGTGTAG

mRNA sequence

ATGGCTGCCTCCGCCGTTGAAAAAACCCTTACCGGCATCAGAAACCTAATTCGTCTCCTCCCCACCGGCACCGTCTTTCTTTTCCAATTCCTCAGTCCAATCCTCACCAACAGCGGCTACCGCGAACCAATCAACAAAAAAGGCAGAGAGATAAAGAAGAAGAACAAAACGTTGTACTCGTTCTTCCTTGGGCGAAAGAAAATAGTGTAG

Coding sequence (CDS)

ATGGCTGCCTCCGCCGTTGAAAAAACCCTTACCGGCATCAGAAACCTAATTCGTCTCCTCCCCACCGGCACCGTCTTTCTTTTCCAATTCCTCAGTCCAATCCTCACCAACAGCGGCTACCGCGAACCAATCAACAAAAAAGGCAGAGAGATAAAGAAGAAGAACAAAACGTTGTACTCGTTCTTCCTTGGGCGAAAGAAAATAGTGTAG

Protein sequence

MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINKKGREIKKKNKTLYSFFLGRKKIV*

Homology

[Close]

BLAST of MELO3C008570 vs. TrEMBL
Match: A0A0A0LAH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150800 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-11
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA+S  EKTLTG+ NLIRLLPTGTVFLFQFLSPI TNSG+ EPINK
Sbjct: 20 MASSPTEKTLTGVGNLIRLLPTGTVFLFQFLSPIPTNSGHCEPINK 65

[Close]

BLAST of MELO3C008570 vs. TrEMBL
Match: A0A0A0L536_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150790 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-08
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 1  MAASAV-EKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA S + +KT TG  +LI++LPTGTVFLFQFLSP+LTNSG+ EPINK
Sbjct: 1  MATSQLNQKTFTGAGDLIKILPTGTVFLFQFLSPVLTNSGHCEPINK 47

[Close]

BLAST of MELO3C008570 vs. TrEMBL
Match: A0A0A0L7S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150780 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-08
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA S+ +KTLTG  +LIR+LPTGTVFLFQFLSP LTNSG+    NK
Sbjct: 1  MATSSKQKTLTGAGDLIRILPTGTVFLFQFLSPSLTNSGHCNSFNK 46

[Close]

BLAST of MELO3C008570 vs. TrEMBL
Match: F6HDJ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02280 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-07
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1


Query: 4  SAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          S  ++T TG+ NLI+LLPTGTVFLFQFL+P+LTN+G+   INK
Sbjct: 17 SITDRTFTGVGNLIKLLPTGTVFLFQFLNPVLTNNGHCHTINK 59

[Close]

BLAST of MELO3C008570 vs. TrEMBL
Match: A0A0D2NYM0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G256300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-07
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 2  AASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          + S  +KT T + NLI+LLPTGTVF+FQFL+P+LTN G+  P+NK
Sbjct: 13 STSISDKTFTSLGNLIKLLPTGTVFIFQFLNPVLTNYGHCSPVNK 57

[Close]

BLAST of MELO3C008570 vs. TAIR10
Match: AT3G21550.1 (AT3G21550.1 DUF679 domain membrane protein 2)

HSP 1 Score: 56.2 bits (134), Expect = 9.2e-09
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1


Query: 7  EKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          ++T +G+ +LI+LLPTGTVFLFQFL+P+LTN+G+   INK
Sbjct: 10 DRTYSGVGDLIKLLPTGTVFLFQFLNPVLTNNGHCLLINK 49

[Close]

BLAST of MELO3C008570 vs. TAIR10
Match: AT3G21520.1 (AT3G21520.1 DUF679 domain membrane protein 1)

HSP 1 Score: 47.8 bits (112), Expect = 3.3e-06
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1


Query: 8  KTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          K+LTG+ +LI+LLPTGT+F++  L+P+LTN G     NK
Sbjct: 25 KSLTGLESLIKLLPTGTLFIYLLLNPVLTNDGECSTGNK 63

[Close]

BLAST of MELO3C008570 vs. NCBI nr
Match: gi|659076592|ref|XP_008438763.1| (PREDICTED: uncharacterized protein LOC103483776 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA SA EKTLTG+ NLIRLLPTGTVFLFQFLSPILTNSG+ EPINK
Sbjct: 24 MATSATEKTLTGVGNLIRLLPTGTVFLFQFLSPILTNSGHCEPINK 69

[Close]

BLAST of MELO3C008570 vs. NCBI nr
Match: gi|778688486|ref|XP_004134465.2| (PREDICTED: uncharacterized protein LOC101205641 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA+S  EKTLTG+ NLIRLLPTGTVFLFQFLSPI TNSG+ EPINK
Sbjct: 1  MASSPTEKTLTGVGNLIRLLPTGTVFLFQFLSPIPTNSGHCEPINK 46

[Close]

BLAST of MELO3C008570 vs. NCBI nr
Match: gi|700201918|gb|KGN57051.1| (hypothetical protein Csa_3G150800 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA+S  EKTLTG+ NLIRLLPTGTVFLFQFLSPI TNSG+ EPINK
Sbjct: 20 MASSPTEKTLTGVGNLIRLLPTGTVFLFQFLSPIPTNSGHCEPINK 65

[Close]

BLAST of MELO3C008570 vs. NCBI nr
Match: gi|449433357|ref|XP_004134464.1| (PREDICTED: uncharacterized protein LOC101205404 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-08
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 1  MAASAV-EKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA S + +KT TG  +LI++LPTGTVFLFQFLSP+LTNSG+ EPINK
Sbjct: 1  MATSQLNQKTFTGAGDLIKILPTGTVFLFQFLSPVLTNSGHCEPINK 47

[Close]

BLAST of MELO3C008570 vs. NCBI nr
Match: gi|659076586|ref|XP_008438760.1| (PREDICTED: uncharacterized protein LOC103483773 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-08
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA S  ++TLTG  +LIR+LPTGTVFLFQFLSPILTNSG+    NK
Sbjct: 1  MATSGKQRTLTGAGDLIRILPTGTVFLFQFLSPILTNSGHCNSFNK 46

The following BLAST results are available for this feature:

BLAST of MELO3C008570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAH2_CUCSA	1.0e-11	82.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150800 PE=4 SV=1	[more]
A0A0A0L536_CUCSA	1.3e-08	70.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150790 PE=4 SV=1	[more]
A0A0A0L7S6_CUCSA	3.9e-08	69.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150780 PE=4 SV=1	[more]
F6HDJ4_VITVI	1.5e-07	65.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02280 PE=4 SV=...	[more]
A0A0D2NYM0_GOSRA	3.3e-07	60.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G256300 PE=4 SV=1	[more]

BLAST of MELO3C008570 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21550.1	9.2e-09	62.50	DUF679 domain membrane protein 2	[more]
AT3G21520.1	3.3e-06	53.85	DUF679 domain membrane protein 1	[more]

BLAST of MELO3C008570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076592\|ref\|XP_008438763.1\|	7.6e-13	86.96	PREDICTED: uncharacterized protein LOC103483776 [Cucumis melo]	[more]
gi\|778688486\|ref\|XP_004134465.2\|	1.4e-11	82.61	PREDICTED: uncharacterized protein LOC101205641 [Cucumis sativus]	[more]
gi\|700201918\|gb\|KGN57051.1\|	1.4e-11	82.61	hypothetical protein Csa_3G150800 [Cucumis sativus]	[more]
gi\|449433357\|ref\|XP_004134464.1\|	1.9e-08	70.21	PREDICTED: uncharacterized protein LOC101205404 [Cucumis sativus]	[more]
gi\|659076586\|ref\|XP_008438760.1\|	3.3e-08	69.57	PREDICTED: uncharacterized protein LOC103483773 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007770	DMP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009705	plant-type vacuole membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008570T1	MELO3C008570T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007770	Protein of unknown function DUF679	PFAM	PF05078	DUF679	coord: 13..46 score: 6.
None	No IPR available	PANTHER	PTHR31621	FAMILY NOT NAMED	coord: 7..39 score: 4.1
None	No IPR available	PANTHER	PTHR31621:SF1	DUF679 DOMAIN MEMBRANE PROTEIN 1	coord: 7..39 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008570	Cucumber (Gy14) v1	cgymeB345
MELO3C008570	Cucurbita maxima (Rimu)	cmameB430
MELO3C008570	Cucurbita maxima (Rimu)	cmameB736
MELO3C008570	Cucurbita moschata (Rifu)	cmomeB420
MELO3C008570	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008570	Wild cucumber (PI 183967)	cpimeB142
MELO3C008570	Cucumber (Chinese Long) v2	cumeB132
MELO3C008570	Watermelon (Charleston Gray)	mewcgB370
MELO3C008570	Watermelon (Charleston Gray)	mewcgB374
MELO3C008570	Watermelon (97103) v1	mewmB424
MELO3C008570	Watermelon (97103) v1	mewmB427
MELO3C008570	Cucurbita pepo (Zucchini)	cpemeB101
MELO3C008570	Cucurbita pepo (Zucchini)	cpemeB528
MELO3C008570	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008570	Cucumber (Gy14) v2	cgybmeB124
MELO3C008570	Silver-seed gourd	carmeB0698
MELO3C008570	Cucumber (Chinese Long) v3	cucmeB144
MELO3C008570	Watermelon (97103) v2	mewmbB371
MELO3C008570	Watermelon (97103) v2	mewmbB374
MELO3C008570	Wax gourd	mewgoB455