MELO3C008564.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008564.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Zf-CCHC domain-containing protein/MP domain-containing protein
Location	chr05 : 13207873 .. 13208520 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCAGATAAACTGGGAAAAGCTTTAGCACTTCTAGAGTGGCCAGGATTACCTAAAGTTGTCCCCAACCGACCAATAGTGCAACCAAACTTCCTGGATATAAAATTAAAGAGATCAAGTACTGATGAGCTTATTGAGGAATTGACACGGAAGCTCTCAGAGACATACATTTTTAAGTAACACGTAGGAACCCCTTCTAAAAAGGGAATTGGTAATTTTGGAATGGGAAGCTAAATACAATCAGCTATGATTCTCAAAAAATTCTTCCTATCAAGGTTTACAACACTGATATGAAGAATCACTACAAAAGGCCATCACCACCAGATCTACGATGTGATGACCTACACTTAGATTTTCGATCTTTTGATGGAAATAATATTGAAACTTGGAACGTTGAGGAATGTTATGAAGGGCAGATGATGATCATTTTGCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCAAAAAGAAATTATTGACGCTTTAACTGCAGGGTTTACAGGAAACCTCAGAAGTTGGTGGCACAATCATCTTACTGATGCAAATAGAGAAGCCATAAAAGAAGCTGTTTTGGAAAAAACAGAACAAGGACCTAATGGCGACACTGTTACCATCCAGCCTAACTGAGTAA

mRNA sequence

ATGAAACCAGATAAACTGGGAAAAGCTTTAGCACTTCTAGAGTGGCCAGGATTACCTAAAGTTGTCCCCAACCGACCAATAGTGCAACCAAACTTCCTGGATATAAAATTAAAGAGATCAAGTACTGATGAGCTTATTGAGGAATTGACACGGAAGCTCTCAGAGACATACATTTTTAAGTAACACGTAGGAACCCCTTCTAAAAAGGGAATTGGTAATTTTGGAATGGGAAGCTAAATACAATCAGCTATGATTCTCAAAAAATTCTTCCTATCAAGGTTTACAACACTGATATGAAGAATCACTACAAAAGGCCATCACCACCAGATCTACGATGTGATGACCTACACTTAGATTTTCGATCTTTTGATGGAAATAATATTGAAACTTGGAACGTTGAGGAATGTTATGAAGGGCAGATGATGATCATTTTGCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCAAAAAGAAATTATTGACGCTTTAACTGCAGGGTTTACAGGAAACCTCAGAAGTTGGTGGCACAATCATCTTACTGATGCAAATAGAGAAGCCATAAAAGAAGCTGTTTTGGAAAAAACAGAACAAGGACCTAATGGCGACACTGTTACCATCCAGCCTAACTGAGTAA

Coding sequence (CDS)

ATGAAGAATCACTACAAAAGGCCATCACCACCAGATCTACGATGTGATGACCTACACTTAGATTTTCGATCTTTTGATGGAAATAATATTGAAACTTGGAACGTTGAGGAATGTTATGAAGGGCAGATGATGATCATTTTGCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCAAAAAGAAATTATTGACGCTTTAACTGCAGGGTTTACAGGAAACCTCAGAAGTTGGTGGCACAATCATCTTACTGATGCAAATAGAGAAGCCATAAAAGAAGCTGTTTTGGAAAAAACAGAACAAGGACCTAATGGCGACACTGTTACCATCCAGCCTAACTGA

Protein sequence

MKNHYKRPSPPDLRCDDLHLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYLRRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVTIQPN

Homology

[Close]

BLAST of MELO3C008564.2 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MKNHYKRPSPPDLRCDDLHLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYLRR 60
           +KNHY RPSPPD+  DDL  D R++D ++I TWN++   E QMM   QEM +AAT++  +
Sbjct: 138 VKNHYPRPSPPDMGWDDLRHDQRTYDESSIITWNIDGYSEAQMMNTFQEMMMAATAFSTK 197

Query: 61  MSQKEIIDALTAGFTGNLRSWWHNHLTDANREAI 95
               +    L +  +GNLRSWWHN LTD +R  I
Sbjct: 198 KPVLQTAQILISSLSGNLRSWWHNQLTDEDRTKI 231

[Close]

BLAST of MELO3C008564.2 vs. NCBI nr
Match: RDX69048.1 (hypothetical protein CR513_51890, partial [Mucuna pruriens])

HSP 1 Score: 81.3 bits (199), Expect = 2.4e-12
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSY--L 61
           K +Y+RP+ PDL  ++    +FRSF+ NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 354 KLYYQRPTAPDLLLEERGEGNFRSFNANNIYEWNIDTQTEYNIMSTLQHMSMVATAYQTA 413

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAV 99
              S+  I++ L +GFTG L+ WW NHLT+ ++  I EAV
Sbjct: 414 HDSSEDVIVNILVSGFTGQLKGWWDNHLTEEDKTQIFEAV 453

[Close]

BLAST of MELO3C008564.2 vs. NCBI nr
Match: KRG99118.1 (hypothetical protein GLYMA_18G122400, partial [Glycine max])

HSP 1 Score: 79.7 bits (195), Expect = 7.1e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSY--L 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 582 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 641

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 642 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 691

[Close]

BLAST of MELO3C008564.2 vs. NCBI nr
Match: KRH04460.1 (hypothetical protein GLYMA_17G162900 [Glycine max])

HSP 1 Score: 79.7 bits (195), Expect = 7.1e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSY--L 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 337 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 396

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 397 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 446

[Close]

BLAST of MELO3C008564.2 vs. NCBI nr
Match: KRH12533.1 (hypothetical protein GLYMA_15G177300 [Glycine max])

HSP 1 Score: 79.7 bits (195), Expect = 7.1e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSY--L 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 651 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 710

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 711 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 760

[Close]

BLAST of MELO3C008564.2 vs. TrEMBL
Match: tr|K7MC34|K7MC34_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G177300 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSY--L 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 651 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 710

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 711 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 760

[Close]

BLAST of MELO3C008564.2 vs. TrEMBL
Match: tr|K7MLZ7|K7MLZ7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G162900 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSY--L 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 337 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 396

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 397 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 446

[Close]

BLAST of MELO3C008564.2 vs. TrEMBL
Match: tr|K7M6U1|K7M6U1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G146500 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSY--L 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 637 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 696

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 697 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 746

[Close]

BLAST of MELO3C008564.2 vs. TrEMBL
Match: tr|K7KJK4|K7KJK4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G118500 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSY--L 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 325 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 384

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 385 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 434

[Close]

BLAST of MELO3C008564.2 vs. TrEMBL
Match: tr|A0A0R0FAM5|A0A0R0FAM5_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 GN=GLYMA_18G122400 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSY--L 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 582 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 641

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 642 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 691

The following BLAST results are available for this feature:

BLAST of MELO3C008564.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151716.1	1.9e-17	47.87	uncharacterized protein LOC111019629 [Momordica charantia]	[more]
RDX69048.1	2.4e-12	42.00	hypothetical protein CR513_51890, partial [Mucuna pruriens]	[more]
KRG99118.1	7.1e-12	40.35	hypothetical protein GLYMA_18G122400, partial [Glycine max]	[more]
KRH04460.1	7.1e-12	40.35	hypothetical protein GLYMA_17G162900 [Glycine max]	[more]
KRH12533.1	7.1e-12	40.35	hypothetical protein GLYMA_15G177300 [Glycine max]	[more]

BLAST of MELO3C008564.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C008564.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C008564.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|K7MC34\|K7MC34_SOYBN	4.7e-12	40.35	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G177300 PE=4 SV=1	[more]
tr\|K7MLZ7\|K7MLZ7_SOYBN	4.7e-12	40.35	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G162900 PE=4 SV=1	[more]
tr\|K7M6U1\|K7M6U1_SOYBN	4.7e-12	40.35	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G146500 PE=4 SV=1	[more]
tr\|K7KJK4\|K7KJK4_SOYBN	4.7e-12	40.35	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G118500 PE=4 SV=1	[more]
tr\|A0A0R0FAM5\|A0A0R0FAM5_SOYBN	4.7e-12	40.35	Uncharacterized protein (Fragment) OS=Glycine max OX=3847 GN=GLYMA_18G122400 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008564.2.1	MELO3C008564.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008564.2	Cucumber (Gy14) v2	cgybmedB122
MELO3C008564.2	Cucumber (Gy14) v1	cgymedB340
MELO3C008564.2	Cucurbita maxima (Rimu)	cmamedB494
MELO3C008564.2	Cucurbita maxima (Rimu)	cmamedB830
MELO3C008564.2	Cucurbita moschata (Rifu)	cmomedB481
MELO3C008564.2	Cucurbita moschata (Rifu)	cmomedB823
MELO3C008564.2	Cucurbita pepo (Zucchini)	cpemedB125
MELO3C008564.2	Cucurbita pepo (Zucchini)	cpemedB627
MELO3C008564.2	Wild cucumber (PI 183967)	cpimedB135
MELO3C008564.2	Cucumber (Chinese Long) v2	cumedB135
MELO3C008564.2	Bottle gourd (USVL1VR-Ls)	lsimedB125
MELO3C008564.2	Watermelon (Charleston Gray)	medwcgB365
MELO3C008564.2	Watermelon (97103) v1	medwmB412
MELO3C008564.2	Silver-seed gourd	carmedB0711
MELO3C008564.2	Cucumber (Chinese Long) v3	cucmedB137
MELO3C008564.2	Watermelon (97103) v2	medwmbB362
MELO3C008564.2	Wax gourd	medwgoB458