MELO3C008564 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008564
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Lysine--tRNA ligase
Location	chr5 : 13195057 .. 13195407 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATCACTACAAAAGGCCATCACCACCAGATCTACGATGTGATGACCTACACTTAGATTTTCGATCTTTTGATGGAAATAATATTGAAACTTGGAACGTTGAGGAATGTTATGAAGGGCAGATGATGATCATTTTGCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCAAAAAGAAATTATTGACGCTTTAACTGCAGGGTTTACAGGAAACCTCAGAAGTTGGTGGCACAATCATCTTACTGATGCAAATAGAGAAGCCATAAAAGAAGCTGTTTTGGAAAAAACAGAACAAGGACCTAATGGCGACACTGTTACCATCCAGCCTAACTGA

mRNA sequence

ATGAAGAATCACTACAAAAGGCCATCACCACCAGATCTACGATGTGATGACCTACACTTAGATTTTCGATCTTTTGATGGAAATAATATTGAAACTTGGAACGTTGAGGAATGTTATGAAGGGCAGATGATGATCATTTTGCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCAAAAAGAAATTATTGACGCTTTAACTGCAGGGTTTACAGGAAACCTCAGAAGTTGGTGGCACAATCATCTTACTGATGCAAATAGAGAAGCCATAAAAGAAGCTGTTTTGGAAAAAACAGAACAAGGACCTAATGGCGACACTGTTACCATCCAGCCTAACTGA

Coding sequence (CDS)

ATGAAGAATCACTACAAAAGGCCATCACCACCAGATCTACGATGTGATGACCTACACTTAGATTTTCGATCTTTTGATGGAAATAATATTGAAACTTGGAACGTTGAGGAATGTTATGAAGGGCAGATGATGATCATTTTGCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCAAAAAGAAATTATTGACGCTTTAACTGCAGGGTTTACAGGAAACCTCAGAAGTTGGTGGCACAATCATCTTACTGATGCAAATAGAGAAGCCATAAAAGAAGCTGTTTTGGAAAAAACAGAACAAGGACCTAATGGCGACACTGTTACCATCCAGCCTAACTGA

Protein sequence

MKNHYKRPSPPDLRCDDLHLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYLRRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVTIQPN*

Homology

[Close]

BLAST of MELO3C008564 vs. TrEMBL
Match: K7LCH7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYL-- 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 406 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 465

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 466 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 515

[Close]

BLAST of MELO3C008564 vs. TrEMBL
Match: K7MC34_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G177300 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYL-- 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 651 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 710

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 711 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 760

[Close]

BLAST of MELO3C008564 vs. TrEMBL
Match: K7KJK4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G118500 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYL-- 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 325 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 384

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 385 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 434

[Close]

BLAST of MELO3C008564 vs. TrEMBL
Match: K7M6U1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G146500 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYL-- 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 637 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 696

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 697 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 746

[Close]

BLAST of MELO3C008564 vs. TrEMBL
Match: K7MLZ7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G162900 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYL-- 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 337 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 396

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 397 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 446

[Close]

BLAST of MELO3C008564 vs. NCBI nr
Match: gi|659128065|ref|XP_008464028.1| (PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-20
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 1


Query: 1   MKNHYKRPSPPDLRCDDLHLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYLRR 60
           MKNHY +PSPPDL  DDLH + R++DG ++ TWN++   E QMM   QEM +AAT+Y  +
Sbjct: 34  MKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATTYSTK 93

Query: 61  MSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEA--VLEKTE 104
            S  E    L  GF GNLRSWWHN L + +R+ I  A   + KTE
Sbjct: 94  KSTYETAQILILGFNGNLRSWWHNLLMEQDRQRILTATRTVVKTE 138

[Close]

BLAST of MELO3C008564 vs. NCBI nr
Match: gi|947055007|gb|KRH04460.1| (hypothetical protein GLYMA_17G162900 [Glycine max])

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYL-- 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 337 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 396

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 397 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 446

[Close]

BLAST of MELO3C008564 vs. NCBI nr
Match: gi|947067150|gb|KRH16293.1| (hypothetical protein GLYMA_14G146500 [Glycine max])

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYL-- 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 637 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 696

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 697 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 746

[Close]

BLAST of MELO3C008564 vs. NCBI nr
Match: gi|947049590|gb|KRG99118.1| (hypothetical protein GLYMA_18G122400, partial [Glycine max])

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYL-- 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 582 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 641

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 642 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 691

[Close]

BLAST of MELO3C008564 vs. NCBI nr
Match: gi|947063272|gb|KRH12533.1| (hypothetical protein GLYMA_15G177300 [Glycine max])

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-12
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 2   KNHYKRPSPPDLRCDDL-HLDFRSFDGNNIETWNVEECYEGQMMIILQEMFVAATSYL-- 61
           K +Y+RP+ PDL  ++    +F+SF  NNI  WN++   E  +M  LQ M + AT+Y   
Sbjct: 651 KLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQTEYNIMNTLQHMTMVATAYQTS 710

Query: 62  RRMSQKEIIDALTAGFTGNLRSWWHNHLTDANREAIKEAVLEKTEQGPNGDTVT 113
              S++ IID L AGF+G L+ WW N+LT+  +  I  AV  KT+   NG  +T
Sbjct: 711 HECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYSAV--KTDL--NGKVIT 760

The following BLAST results are available for this feature:

BLAST of MELO3C008564 vs. TrEMBL


Match Name	E-value	Identity	Description
K7LCH7_SOYBN	2.6e-12	40.35	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
K7MC34_SOYBN	2.6e-12	40.35	Uncharacterized protein OS=Glycine max GN=GLYMA_15G177300 PE=4 SV=1	[more]
K7KJK4_SOYBN	2.6e-12	40.35	Uncharacterized protein OS=Glycine max GN=GLYMA_04G118500 PE=4 SV=1	[more]
K7M6U1_SOYBN	2.6e-12	40.35	Uncharacterized protein OS=Glycine max GN=GLYMA_14G146500 PE=4 SV=1	[more]
K7MLZ7_SOYBN	2.6e-12	40.35	Uncharacterized protein OS=Glycine max GN=GLYMA_17G162900 PE=4 SV=1	[more]

BLAST of MELO3C008564 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128065\|ref\|XP_008464028.1\|	1.7e-20	50.48	PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo]	[more]
gi\|947055007\|gb\|KRH04460.1\|	3.7e-12	40.35	hypothetical protein GLYMA_17G162900 [Glycine max]	[more]
gi\|947067150\|gb\|KRH16293.1\|	3.7e-12	40.35	hypothetical protein GLYMA_14G146500 [Glycine max]	[more]
gi\|947049590\|gb\|KRG99118.1\|	3.7e-12	40.35	hypothetical protein GLYMA_18G122400, partial [Glycine max]	[more]
gi\|947063272\|gb\|KRH12533.1\|	3.7e-12	40.35	hypothetical protein GLYMA_15G177300 [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008564T1	MELO3C008564T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008564	Watermelon (97103) v2	mewmbB371
MELO3C008564	Watermelon (97103) v2	mewmbB374
MELO3C008564	Wax gourd	mewgoB455
MELO3C008564	Cucumber (Gy14) v1	cgymeB345
MELO3C008564	Cucurbita maxima (Rimu)	cmameB430
MELO3C008564	Cucurbita maxima (Rimu)	cmameB736
MELO3C008564	Cucurbita moschata (Rifu)	cmomeB420
MELO3C008564	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008564	Wild cucumber (PI 183967)	cpimeB142
MELO3C008564	Cucumber (Chinese Long) v2	cumeB132
MELO3C008564	Watermelon (Charleston Gray)	mewcgB370
MELO3C008564	Watermelon (Charleston Gray)	mewcgB374
MELO3C008564	Watermelon (97103) v1	mewmB424
MELO3C008564	Watermelon (97103) v1	mewmB427
MELO3C008564	Cucurbita pepo (Zucchini)	cpemeB101
MELO3C008564	Cucurbita pepo (Zucchini)	cpemeB528
MELO3C008564	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008564	Cucumber (Gy14) v2	cgybmeB124
MELO3C008564	Silver-seed gourd	carmeB0698
MELO3C008564	Cucumber (Chinese Long) v3	cucmeB144