MELO3C008562.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C008562.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr05 : 13186307 .. 13186861 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCGAACAACGCAAGACTTCGTGATGTAGCAGATGATCCACAGCAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATATACGATCTACCTATTGTACCTCCACCAATTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAAAGTGAAAGAAGTGCATCCTATGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTTGAGCAGAATATTATGATTCTGAGGTCGGTACATGATATTATGATGTAGGGGTTGGTCCATCGTCTTCATACATGGATGTCGATCCATCAACTTCTTACATGCATGGACACGAACGTGGCTATGAGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCAAAATCGACGACGTCCGGGTTGTGGAACACATTGA

mRNA sequence

AGATCGAACAACGCAAGACTTCGTGATGTAGCAGATGATCCACAGCAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATATACGATCTACCTATTGTACCTCCACCAATTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAAAGTGAAAGAAGTGCATCCTATGACACAAACACAGAGCCAAACTGGTTATGGGGTTGGTCCATCGTCTTCATACATGGATGTCGATCCATCAACTTCTTACATGCATGGACACGAACGTGGCTATGAGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCAAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGGAGGAGATACATAATATATACGATCTACCTATTGTACCTCCACCAATTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAAAGTGAAAGAAGTGCATCCTATGACACAAACACAGAGCCAAACTGGTTATGGGGTTGGTCCATCGTCTTCATACATGGATGTCGATCCATCAACTTCTTACATGCATGGACACGAACGTGGCTATGAGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCAAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Protein sequence

MEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVYHKVKEVHPMTQTQSQTGYGVGPSSSYMDVDPSTSYMHGHERGYEEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPAQNRRRPGCGTH
Homology
[Close]
BLAST of MELO3C008562.2 vs. NCBI nr
Match: KGN45851.1 (hypothetical protein Csa_6G014710 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 6.0e-07
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 1  MEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVYHKVKEVHPMTQTQS 48
          MEEIH      IVPP + RG VRVEE ELDE+YH +KE+HPM QTQS
Sbjct: 44 MEEIHY-----IVPPSVRRGHVRVEEVELDEIYHNLKELHPMIQTQS 85

[Close]
BLAST of MELO3C008562.2 vs. TrEMBL
Match: tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-07
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 1  MEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVYHKVKEVHPMTQTQS 48
          MEEIH      IVPP + RG VRVEE ELDE+YH +KE+HPM QTQS
Sbjct: 44 MEEIHY-----IVPPSVRRGHVRVEEVELDEIYHNLKELHPMIQTQS 85

[Close]
BLAST of MELO3C008562.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-04
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1   MEEIHNIYDLPIVPPPIHRGRVRVEEA-ELDEVYHKVKEVHPMTQTQSQT 50
           ME IH +YD+PIVP P+ R R  V+E+ +L+EV    +EV PMTQTQ+Q+
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 126

[Close]
BLAST of MELO3C008562.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-04
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1   MEEIHNIYDLPIVPPPIHRGRVRVEEA-ELDEVYHKVKEVHPMTQTQSQT 50
           ME IH +YD+PIVP P+ R R  V+E+ +L+EV    +EV PMTQTQ+Q+
Sbjct: 57  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 106

The following BLAST results are available for this feature:
BLAST of MELO3C008562.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45851.16.0e-0765.96hypothetical protein Csa_6G014710 [Cucumis sativus][more]
BLAST of MELO3C008562.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C008562.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C008562.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA3.9e-0765.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1[more]
tr|A0A1S3BLK4|A0A1S3BLK4_CUCME7.0e-0454.00mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME7.0e-0454.00GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008562.2.1MELO3C008562.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..131

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008562.2Cucumber (Gy14) v2cgybmedB122
MELO3C008562.2Cucumber (Gy14) v1cgymedB340
MELO3C008562.2Cucurbita maxima (Rimu)cmamedB494
MELO3C008562.2Cucurbita maxima (Rimu)cmamedB830
MELO3C008562.2Cucurbita moschata (Rifu)cmomedB481
MELO3C008562.2Cucurbita moschata (Rifu)cmomedB823
MELO3C008562.2Cucurbita pepo (Zucchini)cpemedB125
MELO3C008562.2Cucurbita pepo (Zucchini)cpemedB627
MELO3C008562.2Wild cucumber (PI 183967)cpimedB135
MELO3C008562.2Cucumber (Chinese Long) v2cumedB135
MELO3C008562.2Bottle gourd (USVL1VR-Ls)lsimedB125
MELO3C008562.2Watermelon (Charleston Gray)medwcgB365
MELO3C008562.2Watermelon (97103) v1medwmB412
MELO3C008562.2Silver-seed gourdcarmedB0711
MELO3C008562.2Silver-seed gourdcarmedB1051
MELO3C008562.2Cucumber (Chinese Long) v3cucmedB137
MELO3C008562.2Watermelon (97103) v2medwmbB362
MELO3C008562.2Wax gourdmedwgoB458