MELO3C008562 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008562
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProtein translocase subunit SecA
Locationchr5 : 13173474 .. 13174028 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCGAACAACGCAAGACTTCGTGATGTAGCAGATGATCCACAGCAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATATACGATCTACCTATTGTACCTCCACCAATTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAAAGTGAAAGAAGTGCATCCTATGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTTGAGCAGAATATTATGATTCTGAGGTCGGTACATGATATTATGATGTAGGGGTTGGTCCATCGTCTTCATACATGGATGTCGATCCATCAACTTCTTACATGCATGGACACGAACGTGGCTATGAGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCAAAATCGACGACGTCCGGGTTGTGGAACACATTGA

mRNA sequence

AGATCGAACAACGCAAGACTTCGTGATGTAGCAGATGATCCACAGCAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATATACGATCTACCTATTGTACCTCCACCAATTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAAAGTGAAAGAAGTGCATCCTATGACACAAACACAGAGCCAAACTGGTTATGGGGTTGGTCCATCGTCTTCATACATGGATGTCGATCCATCAACTTCTTACATGCATGGACACGAACGTGGCTATGAGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCAAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Coding sequence (CDS)

AGATCGAACAACGCAAGACTTCGTGATGTAGCAGATGATCCACAGCAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATATACGATCTACCTATTGTACCTCCACCAATTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAAAGTGAAAGAAGTGCATCCTATGACACAAACACAGAGCCAAACTGGTTATGGGGTTGGTCCATCGTCTTCATACATGGATGTCGATCCATCAACTTCTTACATGCATGGACACGAACGTGGCTATGAGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCAAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Protein sequence

RSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVYHKVKEVHPMTQTQSQTGYGVGPSSSYMDVDPSTSYMHGHERGYEEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPAQNRRRPGCGTH*
Homology
[Close]
BLAST of MELO3C008562 vs. TrEMBL
Match: A0A0A0KDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014710 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.6e-18
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 2  SNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVYH 61
          SNN  L DVAD  Q +LDI NNNERYMEEIH I     VPP + RG VRVEE ELDE+YH
Sbjct: 18 SNNISLHDVADVQQHILDISNNNERYMEEIHYI-----VPPSVRRGHVRVEEVELDEIYH 77

Query: 62 KVKEVHPMTQTQS 75
           +KE+HPM QTQS
Sbjct: 78 NLKELHPMIQTQS 85

[Close]
BLAST of MELO3C008562 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-25
Identity = 84/216 (38.89%), Postives = 112/216 (51.85%), Query Frame = 1 

Query: 1   RSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEA-ELDEV 60
           RSNN RLR++ADDPQQVL+ICN+NE+YME IH +YD+PIVP P+ R R  V+E+ +L+EV
Sbjct: 50  RSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEV 109

Query: 61  YHKVKEVHPMTQTQSQTGY-------------------GVGPSSSY-------MDVDPST 120
               +EV PMTQTQ+Q+ +                   GVG SS +            ST
Sbjct: 110 DQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSST 169

Query: 121 SY-MHGHERGYEEHNEYLYHEAPADVSDRQEY-----------------QQE-------- 159
            +    ++ G +  + Y+ H       +  EY                 QQE        
Sbjct: 170 DFGQQYYDLGSDPSSSYM-HGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQS 229

[Close]
BLAST of MELO3C008562 vs. NCBI nr
Match: gi|700190647|gb|KGN45851.1| (hypothetical protein Csa_6G014710 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 8.0e-18
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 2  SNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVYH 61
          SNN  L DVAD  Q +LDI NNNERYMEEIH I     VPP + RG VRVEE ELDE+YH
Sbjct: 18 SNNISLHDVADVQQHILDISNNNERYMEEIHYI-----VPPSVRRGHVRVEEVELDEIYH 77

Query: 62 KVKEVHPMTQTQS 75
           +KE+HPM QTQS
Sbjct: 78 NLKELHPMIQTQS 85

[Close]
BLAST of MELO3C008562 vs. NCBI nr
Match: gi|659123452|ref|XP_008461671.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 9.5e-11
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 1 

Query: 1   RSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEA-ELDEV 60
           RS N RL++VADDPQQVL+ICN+NE+YME IH +Y++ IVP  + R R  V+E+ +L+EV
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 214

Query: 61  YHKVKEV 67
              V+EV
Sbjct: 215 VQHVEEV 221

[Close]
BLAST of MELO3C008562 vs. NCBI nr
Match: gi|659123450|ref|XP_008461670.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 9.5e-11
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 1 

Query: 1   RSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEA-ELDEV 60
           RS N RL++VADDPQQVL+ICN+NE+YME IH +Y++ IVP  + R R  V+E+ +L+EV
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 221

Query: 61  YHKVKEV 67
              V+EV
Sbjct: 222 VQHVEEV 228

The following BLAST results are available for this feature:
BLAST of MELO3C008562 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDI9_CUCSA5.6e-1867.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014710 PE=4 SV=1[more]
BLAST of MELO3C008562 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|8.8e-2538.89PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|700190647|gb|KGN45851.1|8.0e-1867.12hypothetical protein Csa_6G014710 [Cucumis sativus][more]
gi|659123452|ref|XP_008461671.1|9.5e-1156.72PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo][more]
gi|659123450|ref|XP_008461670.1|9.5e-1156.72PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008562T1MELO3C008562T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008562Cucurbita pepo (Zucchini)cpemeB101
MELO3C008562Cucurbita pepo (Zucchini)cpemeB528
MELO3C008562Bottle gourd (USVL1VR-Ls)lsimeB117
MELO3C008562Cucumber (Gy14) v2cgybmeB124
MELO3C008562Silver-seed gourdcarmeB0698
MELO3C008562Silver-seed gourdcarmeB1037
MELO3C008562Cucumber (Chinese Long) v3cucmeB144
MELO3C008562Watermelon (97103) v2mewmbB371
MELO3C008562Watermelon (97103) v2mewmbB374
MELO3C008562Wax gourdmewgoB455
MELO3C008562Cucumber (Gy14) v1cgymeB345
MELO3C008562Cucurbita maxima (Rimu)cmameB430
MELO3C008562Cucurbita maxima (Rimu)cmameB736
MELO3C008562Cucurbita moschata (Rifu)cmomeB420
MELO3C008562Cucurbita moschata (Rifu)cmomeB726
MELO3C008562Wild cucumber (PI 183967)cpimeB142
MELO3C008562Cucumber (Chinese Long) v2cumeB132
MELO3C008562Watermelon (Charleston Gray)mewcgB370
MELO3C008562Watermelon (Charleston Gray)mewcgB374
MELO3C008562Watermelon (97103) v1mewmB424
MELO3C008562Watermelon (97103) v1mewmB427