MELO3C008538.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008538.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	condensin complex subunit 1
Location	chr05 : 12196099 .. 12196292 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGCACCATCAGATATTGTTCGTTCCAATTGTACTATTGCTTTAGGAGATTTGGCAGTTTGTTTCCCTAATCTCTTGGAGCCATGGACCGAGAATATGTATACAAGGTTGAAGGATCCTTCAAATTCTGTTAGGAAGAATGTTGTATTGGAGCTATCTCATCTCATTTTCAACGATATTATGAAGGCTTGA

mRNA sequence

AAATTGCACCATCAGATATTGTTCGTTCCAATTGTACTATTGCTTTAGGAGATTTGGCAGTTTGTTTCCCTAATCTCTTGGAGCCATGGACCGAGAATATGTATACAAGGTTGAAGGATCCTTCAAATTCTGTTAGGAAGAATGTTGTATTGGAGCTATCTCATCTCATTTTCAACGATATTATGAAGGCTTGA

Coding sequence (CDS)

ATTGCACCATCAGATATTGTTCGTTCCAATTGTACTATTGCTTTAGGAGATTTGGCAGTTTGTTTCCCTAATCTCTTGGAGCCATGGACCGAGAATATGTATACAAGGTTGAAGGATCCTTCAAATTCTGTTAGGAAGAATGTTGTATTGGAGCTATCTCATCTCATTTTCAACGATATTATGAAGGCTTGA

Protein sequence

IAPSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMKA

Homology

[Close]

BLAST of MELO3C008538.2 vs. NCBI nr
Match: XP_022935076.1 (condensin complex subunit 1 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+M
Sbjct: 981  APSDIVRSNCTIALGDLAVRFPNLLEPWTENMYGRLKDPSNSVRKNAVLVLSHLILNDMM 1040

Query: 62   K 63
            K
Sbjct: 1041 K 1041

[Close]

BLAST of MELO3C008538.2 vs. NCBI nr
Match: XP_022983683.1 (condensin complex subunit 1 [Cucurbita maxima])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+M
Sbjct: 981  APSDIVRSNCTIALGDLAVRFPNLLEPWTENMYGRLKDPSNSVRKNAVLVLSHLILNDMM 1040

Query: 62   K 63
            K
Sbjct: 1041 K 1041

[Close]

BLAST of MELO3C008538.2 vs. NCBI nr
Match: XP_023527692.1 (condensin complex subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+M
Sbjct: 981  APSDIVRSNCTIALGDLAVRFPNLLEPWTENMYGRLKDPSNSVRKNAVLVLSHLILNDMM 1040

Query: 62   K 63
            K
Sbjct: 1041 K 1041

[Close]

BLAST of MELO3C008538.2 vs. NCBI nr
Match: XP_022158546.1 (condensin complex subunit 1 [Momordica charantia] >XP_022158547.1 condensin complex subunit 1 [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 5.4e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPS SVRKN VL LSHLI ND+M
Sbjct: 983  APSDIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSKSVRKNAVLVLSHLILNDMM 1042

Query: 62   K 63
            K
Sbjct: 1043 K 1043

[Close]

BLAST of MELO3C008538.2 vs. NCBI nr
Match: XP_008443280.1 (PREDICTED: condensin complex subunit 1 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKD SNSVRKN VL LSHLI ND+M
Sbjct: 981  APSDIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDHSNSVRKNAVLVLSHLILNDMM 1040

Query: 62   K 63
            K
Sbjct: 1041 K 1041

[Close]

BLAST of MELO3C008538.2 vs. TAIR10
Match: AT3G57060.2 (binding)

HSP 1 Score: 103.2 bits (256), Expect = 5.9e-23
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APS++VRSNCT++LGDLAV FPNLLEPWTENMY RL+D S SVRKN VL LSHLI ND+M
Sbjct: 978  APSEVVRSNCTLSLGDLAVRFPNLLEPWTENMYARLRDASVSVRKNAVLVLSHLILNDMM 1037

Query: 62   K 63
            K
Sbjct: 1038 K 1038

[Close]

BLAST of MELO3C008538.2 vs. Swiss-Prot
Match: sp|Q9YHY6|CND1_XENLA (Condensin complex subunit 1 OS=Xenopus laevis OX=8355 GN=ncapd2 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.8e-14
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            +P   VRSN  IALGDL++ FPNL+EPWT N+Y RL+DPS  VRK   + ++HLI  D++
Sbjct: 1042 SPLPSVRSNIMIALGDLSIRFPNLIEPWTPNLYARLRDPSREVRKTAGMVMTHLILKDMV 1101

Query: 62   K 63
            K
Sbjct: 1102 K 1102

[Close]

BLAST of MELO3C008538.2 vs. Swiss-Prot
Match: sp|Q15021|CND1_HUMAN (Condensin complex subunit 1 OS=Homo sapiens OX=9606 GN=NCAPD2 PE=1 SV=3)

HSP 1 Score: 75.1 bits (183), Expect = 3.1e-13
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            +P  IVRSN  +A GDLA+ FPNL++PWT ++Y RL+DP+  VRK   L ++HLI  D++
Sbjct: 1066 SPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMV 1125

Query: 62   K 63
            K
Sbjct: 1126 K 1126

[Close]

BLAST of MELO3C008538.2 vs. Swiss-Prot
Match: sp|Q8K2Z4|CND1_MOUSE (Condensin complex subunit 1 OS=Mus musculus OX=10090 GN=Ncapd2 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-12
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 7    VRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK 63
            VRSN  +A GDLA+ FPNL++PWT ++Y RL+DP+  VRK   L ++HLI  D++K
Sbjct: 1061 VRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVK 1116

[Close]

BLAST of MELO3C008538.2 vs. Swiss-Prot
Match: sp|Q06156|CND1_YEAST (Condensin complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YCS4 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-05
Identity = 21/55 (38.18%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLI 57
            +P   +RSN  + LGD+AVCF NL++  T+ +Y RL D +  V++  ++ ++ LI
Sbjct: 988  SPDPTIRSNAVLGLGDMAVCFNNLVDENTDYLYRRLHDENLMVQRTCLMTVTFLI 1042

[Close]

BLAST of MELO3C008538.2 vs. Swiss-Prot
Match: sp|O94679|CND1_SCHPO (Condensin complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cnd1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-04
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 6    IVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLI 57
            I+R+N  I L DL VCF + ++  +E +Y RL D  +SV+K   + L+ LI
Sbjct: 976  IIRNNLVIGLADLTVCFNHFIDEISEYLYRRLMDEESSVKKTCFMTLAFLI 1026

[Close]

BLAST of MELO3C008538.2 vs. TrEMBL
Match: tr|A0A1S3B7M0|A0A1S3B7M0_CUCME (Condensin complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103486899 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.9e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKD SNSVRKN VL LSHLI ND+M
Sbjct: 981  APSDIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDHSNSVRKNAVLVLSHLILNDMM 1040

Query: 62   K 63
            K
Sbjct: 1041 K 1041

[Close]

BLAST of MELO3C008538.2 vs. TrEMBL
Match: tr|A0A0B0N4S7|A0A0B0N4S7_GOSAR (Condensin complex subunit 1 OS=Gossypium arboreum OX=29729 GN=F383_00490 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APS+IVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPS SVRKN VL LSHLI ND+M
Sbjct: 963  APSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSVSVRKNAVLVLSHLILNDMM 1022

Query: 62   K 63
            K
Sbjct: 1023 K 1023

[Close]

BLAST of MELO3C008538.2 vs. TrEMBL
Match: tr|A0A1U8N1R8|A0A1U8N1R8_GOSHI (Condensin complex subunit 1 OS=Gossypium hirsutum OX=3635 GN=LOC107942588 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APS+IVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPS SVRKN VL LSHLI ND+M
Sbjct: 980  APSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSVSVRKNAVLVLSHLILNDMM 1039

Query: 62   K 63
            K
Sbjct: 1040 K 1040

[Close]

BLAST of MELO3C008538.2 vs. TrEMBL
Match: tr|A0A1U8N1V6|A0A1U8N1V6_GOSHI (Condensin complex subunit 1 OS=Gossypium hirsutum OX=3635 GN=LOC107942588 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APS+IVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPS SVRKN VL LSHLI ND+M
Sbjct: 980  APSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSVSVRKNAVLVLSHLILNDMM 1039

Query: 62   K 63
            K
Sbjct: 1040 K 1040

[Close]

BLAST of MELO3C008538.2 vs. TrEMBL
Match: tr|A0A2P5XMZ8|A0A2P5XMZ8_GOSBA (Condensin complex subunit 1 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA15971 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2    APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIM 61
            APS+IVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPS SVRKN VL LSHLI ND+M
Sbjct: 980  APSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSVSVRKNAVLVLSHLILNDMM 1039

Query: 62   K 63
            K
Sbjct: 1040 K 1040

The following BLAST results are available for this feature:

BLAST of MELO3C008538.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935076.1	1.9e-22	90.16	condensin complex subunit 1 [Cucurbita moschata]	[more]
XP_022983683.1	1.9e-22	90.16	condensin complex subunit 1 [Cucurbita maxima]	[more]
XP_023527692.1	1.9e-22	90.16	condensin complex subunit 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022158546.1	5.4e-22	88.52	condensin complex subunit 1 [Momordica charantia] >XP_022158547.1 condensin comp...	[more]
XP_008443280.1	1.2e-21	88.52	PREDICTED: condensin complex subunit 1 [Cucumis melo]	[more]

BLAST of MELO3C008538.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57060.2	5.9e-23	78.69	binding	[more]

BLAST of MELO3C008538.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9YHY6\|CND1_XENLA	4.8e-14	55.74	Condensin complex subunit 1 OS=Xenopus laevis OX=8355 GN=ncapd2 PE=1 SV=1	[more]
sp\|Q15021\|CND1_HUMAN	3.1e-13	52.46	Condensin complex subunit 1 OS=Homo sapiens OX=9606 GN=NCAPD2 PE=1 SV=3	[more]
sp\|Q8K2Z4\|CND1_MOUSE	3.4e-12	53.57	Condensin complex subunit 1 OS=Mus musculus OX=10090 GN=Ncapd2 PE=1 SV=2	[more]
sp\|Q06156\|CND1_YEAST	1.8e-05	38.18	Condensin complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
sp\|O94679\|CND1_SCHPO	1.2e-04	41.18	Condensin complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of MELO3C008538.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7M0\|A0A1S3B7M0_CUCME	7.9e-22	88.52	Condensin complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103486899 PE=3 SV=1	[more]
tr\|A0A0B0N4S7\|A0A0B0N4S7_GOSAR	2.3e-21	86.89	Condensin complex subunit 1 OS=Gossypium arboreum OX=29729 GN=F383_00490 PE=3 SV...	[more]
tr\|A0A1U8N1R8\|A0A1U8N1R8_GOSHI	2.3e-21	86.89	Condensin complex subunit 1 OS=Gossypium hirsutum OX=3635 GN=LOC107942588 PE=3 S...	[more]
tr\|A0A1U8N1V6\|A0A1U8N1V6_GOSHI	2.3e-21	86.89	Condensin complex subunit 1 OS=Gossypium hirsutum OX=3635 GN=LOC107942588 PE=3 S...	[more]
tr\|A0A2P5XMZ8\|A0A2P5XMZ8_GOSBA	2.3e-21	86.89	Condensin complex subunit 1 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA15971 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007076	mitotic chromosome condensation
GO:0000278	mitotic cell cycle
GO:0030261	chromosome condensation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR026971	CND1/NCAPD3
IPR007673	Condensin_cplx_su1
IPR032682	Cnd1_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0007076	mitotic chromosome condensation
biological_process	GO:0000278	mitotic cell cycle
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008538.2.1	MELO3C008538.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032682	Condensin complex subunit 1, C-terminal	PFAM	PF12717	Cnd1	coord: 6..62 e-value: 8.2E-15 score: 55.1
IPR007673	Condensin subunit 1	PANTHER	PTHR14222:SF2	CONDENSIN COMPLEX SUBUNIT 1	coord: 4..62
IPR026971	Condensin subunit 1/Condensin-2 complex subunit D3	PANTHER	PTHR14222	CONDENSIN	coord: 4..62
IPR016024	Armadillo-type fold	SUPERFAMILY	SSF48371	ARM repeat	coord: 3..57

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008538.2	Wax gourd	medwgoB458
MELO3C008538.2	Cucumber (Gy14) v2	cgybmedB122
MELO3C008538.2	Cucumber (Gy14) v1	cgymedB443
MELO3C008538.2	Cucurbita maxima (Rimu)	cmamedB494
MELO3C008538.2	Cucurbita maxima (Rimu)	cmamedB830
MELO3C008538.2	Cucurbita moschata (Rifu)	cmomedB481
MELO3C008538.2	Cucurbita moschata (Rifu)	cmomedB823
MELO3C008538.2	Cucurbita pepo (Zucchini)	cpemedB125
MELO3C008538.2	Cucurbita pepo (Zucchini)	cpemedB627
MELO3C008538.2	Wild cucumber (PI 183967)	cpimedB135
MELO3C008538.2	Cucumber (Chinese Long) v2	cumedB135
MELO3C008538.2	Bottle gourd (USVL1VR-Ls)	lsimedB125
MELO3C008538.2	Watermelon (97103) v1	medwmB417
MELO3C008538.2	Silver-seed gourd	carmedB0711
MELO3C008538.2	Cucumber (Chinese Long) v3	cucmedB137