MELO3C008514 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008514
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Gag-pol polyprotein
Location	chr5 : 11524074 .. 11524463 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATGATTAAAGAAGGAGGATCTACTACTCGTCCACCAGTTCTTGATGGCATAAATTATGCTTATTGGAAGGCTCGTATGACAGCTTTTCTCAAATCAATTGACAATAAAACCTGGAAAGCTGTCATCTCCAGTTGGGAGCCACCTACTATTACTATAAAAGACAAATCTACACCAAAACGAGAATCTGATTGGACTGATGCTGAAGATCAAGCTTCTCTTGGCAACTCTCGTGCCCTTAATGCTATTTATAATGATCAAAATGTATTTAAATTAATAAATACTTGTACATCTGCAAAAGAAGCTTGGAAAATTCTTGAAGTTGCATATGAAGGAACGTCAAAGGTAAAAACTTCTCTATTACAATTGTTGAGTTCGACTGCTTGA

mRNA sequence

ATGAATATGATTAAAGAAGGAGGATCTACTACTCGTCCACCAGTTCTTGATGGCATAAATTATGCTTATTGGAAGGCTCGTATGACAGCTTTTCTCAAATCAATTGACAATAAAACCTGGAAAGCTGTCATCTCCAGTTGGGAGCCACCTACTATTACTATAAAAGACAAATCTACACCAAAACGAGAATCTGATTGGACTGATGCTGAAGATCAAGCTTCTCTTGGCAACTCTCGTGCCCTTAATGCTATTTATAATGATCAAAATGTATTTAAATTAATAAATACTTGTACATCTGCAAAAGAAGCTTGGAAAATTCTTGAAGTTGCATATGAAGGAACGTCAAAGGTAAAAACTTCTCTATTACAATTGTTGAGTTCGACTGCTTGA

Coding sequence (CDS)

ATGAATATGATTAAAGAAGGAGGATCTACTACTCGTCCACCAGTTCTTGATGGCATAAATTATGCTTATTGGAAGGCTCGTATGACAGCTTTTCTCAAATCAATTGACAATAAAACCTGGAAAGCTGTCATCTCCAGTTGGGAGCCACCTACTATTACTATAAAAGACAAATCTACACCAAAACGAGAATCTGATTGGACTGATGCTGAAGATCAAGCTTCTCTTGGCAACTCTCGTGCCCTTAATGCTATTTATAATGATCAAAATGTATTTAAATTAATAAATACTTGTACATCTGCAAAAGAAGCTTGGAAAATTCTTGAAGTTGCATATGAAGGAACGTCAAAGGTAAAAACTTCTCTATTACAATTGTTGAGTTCGACTGCTTGA

Protein sequence

MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTPKRESDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTSLLQLLSSTA*

Homology

[Close]

BLAST of MELO3C008514 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.0e-38
Identity = 81/132 (61.36%), Postives = 102/132 (77.27%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWE-PPTITIKDKST 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI  WE P  +  + K T
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  P--KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 120
              K E DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL++ +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KVKTSLLQLLSS 128
           KVK S LQLL++
Sbjct: 121 KVKMSRLQLLAT 132

[Close]

BLAST of MELO3C008514 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.0e-38
Identity = 81/132 (61.36%), Postives = 102/132 (77.27%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWE-PPTITIKDKST 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI  WE P  +  + K T
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  P--KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 120
              K E DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL++ +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KVKTSLLQLLSS 128
           KVK S LQLL++
Sbjct: 121 KVKISRLQLLAT 132

[Close]

BLAST of MELO3C008514 vs. TrEMBL
Match: V9H042_SOYBN (Gag-protease polyprotein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.2e-38
Identity = 81/132 (61.36%), Postives = 101/132 (76.52%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWE-PPTITIKDKST 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI  WE P  +  + K T
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPT 60

Query: 61  P--KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 120
              K E DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL+  +EGTS
Sbjct: 61  DGLKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

Query: 121 KVKTSLLQLLSS 128
           KVK S LQLL++
Sbjct: 121 KVKMSRLQLLAT 132

[Close]

BLAST of MELO3C008514 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.8e-38
Identity = 80/132 (60.61%), Postives = 100/132 (75.76%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITI---KDK 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI  WE P +     K  
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  STPKRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 120
           +  K E DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL+  +EGTS
Sbjct: 61  NELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

Query: 121 KVKTSLLQLLSS 128
           KVK S LQLL++
Sbjct: 121 KVKMSRLQLLAT 132

[Close]

BLAST of MELO3C008514 vs. TrEMBL
Match: Q84VI2_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.7e-36
Identity = 80/132 (60.61%), Postives = 100/132 (75.76%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWE-PPTITIKDKST 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI  WE P  +  + K T
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  P--KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 120
              K E DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+A +IL+  +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTS 120

Query: 121 KVKTSLLQLLSS 128
           KVK S LQLL++
Sbjct: 121 KVKMSRLQLLAT 132

[Close]

BLAST of MELO3C008514 vs. NCBI nr
Match: gi|659082599|ref|XP_008441927.1| (PREDICTED: uncharacterized protein LOC103485921 [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 3.4e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP 60
           MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP
Sbjct: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP 60

Query: 61  KRESDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTS 120
           KRESDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTS
Sbjct: 61  KRESDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTS 120

Query: 121 LLQLLSSTA 130
           LLQLLSSTA
Sbjct: 121 LLQLLSSTA 129

[Close]

BLAST of MELO3C008514 vs. NCBI nr
Match: gi|659113177|ref|XP_008456437.1| (PREDICTED: uncharacterized protein LOC103496379 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 4.7e-40
Identity = 80/129 (62.02%), Postives = 106/129 (82.17%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP 60
           M +I+EG ST+RPPVLDG NY+YWK RM  F++++D + W+A+++ ++PP IT+   S P
Sbjct: 1   MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVP 60

Query: 61  KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           K E DWTDAE+Q+ +GN+RALNAI+N  D NVFKLIN+C++AKEAWK LEVAYEGTSKVK
Sbjct: 61  KPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCSTAKEAWKTLEVAYEGTSKVK 120

Query: 121 TSLLQLLSS 128
            S LQL++S
Sbjct: 121 ISRLQLITS 129

[Close]

BLAST of MELO3C008514 vs. NCBI nr
Match: gi|659126719|ref|XP_008463331.1| (PREDICTED: uncharacterized protein LOC103501512 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-39
Identity = 80/129 (62.02%), Postives = 104/129 (80.62%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP 60
           M +I+EG S +RPPVLDG NY+YWK RM   +K++D K W+A+++ +EPP +T+ + S  
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFSIKTLDGKAWRALVAGYEPPMVTMDEVSVL 60

Query: 61  KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           K E DWTD E+QAS+GN+RA+NAI+N  D NVFKLIN+CT+ KEAWKILEVAYEGTSKVK
Sbjct: 61  KPEVDWTDVEEQASVGNARAINAIFNGVDLNVFKLINSCTTTKEAWKILEVAYEGTSKVK 120

Query: 121 TSLLQLLSS 128
            S LQL++S
Sbjct: 121 ISSLQLITS 129

[Close]

BLAST of MELO3C008514 vs. NCBI nr
Match: gi|659086617|ref|XP_008444029.1| (PREDICTED: uncharacterized protein LOC103487481 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 5.1e-39
Identity = 79/129 (61.24%), Postives = 102/129 (79.07%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP 60
           M +I+EG S +RPPV D  NY YWK RM  F+K++D K W+ +++ +EPP +T+   S P
Sbjct: 1   MEIIREGPSASRPPVPDDKNYLYWKPRMIFFIKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           K + DWTDAE+QAS+GN+RA+NAI+N  D NVFKLIN+CT+AKEAWKILEVAYEGTSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGMDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 TSLLQLLSS 128
              LQL++S
Sbjct: 121 IFRLQLITS 129

[Close]

BLAST of MELO3C008514 vs. NCBI nr
Match: gi|29423270|gb|AAO73521.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 166.0 bits (419), Expect = 4.4e-38
Identity = 81/132 (61.36%), Postives = 102/132 (77.27%), Query Frame = 1


Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWE-PPTITIKDKST 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI  WE P  +  + K T
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  P--KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 120
              K E DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL++ +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KVKTSLLQLLSS 128
           KVK S LQLL++
Sbjct: 121 KVKISRLQLLAT 132

The following BLAST results are available for this feature:

BLAST of MELO3C008514 vs. TrEMBL


Match Name	E-value	Identity	Description
Q84VH8_SOYBN	3.0e-38	61.36	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VI4_SOYBN	3.0e-38	61.36	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
V9H042_SOYBN	5.2e-38	61.36	Gag-protease polyprotein OS=Glycine max PE=2 SV=1	[more]
Q84VH6_SOYBN	6.8e-38	60.61	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VI2_SOYBN	3.7e-36	60.61	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]

BLAST of MELO3C008514 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082599\|ref\|XP_008441927.1\|	3.4e-67	100.00	PREDICTED: uncharacterized protein LOC103485921 [Cucumis melo]	[more]
gi\|659113177\|ref\|XP_008456437.1\|	4.7e-40	62.02	PREDICTED: uncharacterized protein LOC103496379 [Cucumis melo]	[more]
gi\|659126719\|ref\|XP_008463331.1\|	1.4e-39	62.02	PREDICTED: uncharacterized protein LOC103501512 [Cucumis melo]	[more]
gi\|659086617\|ref\|XP_008444029.1\|	5.1e-39	61.24	PREDICTED: uncharacterized protein LOC103487481 [Cucumis melo]	[more]
gi\|29423270\|gb\|AAO73521.1\|	4.4e-38	61.36	gag-pol polyprotein [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008514T1	MELO3C008514T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008514	Cucumber (Chinese Long) v3	cucmeB135
MELO3C008514	Watermelon (97103) v2	mewmbB392
MELO3C008514	Wax gourd	mewgoB448
MELO3C008514	Cucumber (Gy14) v1	cgymeB445
MELO3C008514	Cucurbita maxima (Rimu)	cmameB277
MELO3C008514	Cucurbita moschata (Rifu)	cmomeB268
MELO3C008514	Wild cucumber (PI 183967)	cpimeB133
MELO3C008514	Cucumber (Chinese Long) v2	cumeB143
MELO3C008514	Watermelon (Charleston Gray)	mewcgB391
MELO3C008514	Watermelon (97103) v1	mewmB442
MELO3C008514	Cucurbita pepo (Zucchini)	cpemeB173
MELO3C008514	Bottle gourd (USVL1VR-Ls)	lsimeB028
MELO3C008514	Cucumber (Gy14) v2	cgybmeB114