MELO3C008486 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008486
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Insertion element IS136 uncharacterized protein
Location	chr3 : 7385849 .. 7386168 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCTCTCACCCTCTCTAGCGCCCCCTTCTAGGGGACTTATGCCCGATCCGCCGCTGAGGACGCTTGTCCAGACTACAATTCGGACGTCGACGATGCCTGATTCTCAAGCTGGGCTCTTCCCAGTTTGCTCGCCGTTACTAGGGGAATCCTTGTAAGTTTCTTTTCCTCCGCTTATTGATATGCTTAAACTCAGCGGGTAGTCCCGCCTGACCTGGGGTCACGTCGAGAGCGTCGTCCTTTTAAGGGGCAGCGTTCGAAGGGTCGTGAAGGAGTCCGTGAAGTCGATGTCGAGGTCGAGATGCGTCACCAAGGTTGA

mRNA sequence

ATGGGGCTCTCACCCTCTCTAGCGCCCCCTTCTAGGGGACTTATGCCCGATCCGCCGCTGAGGACGCTTGTCCAGACTACAATTCGGACGTCGACGATGCCTGATTCTCAAGCTGGGCTCTTCCCACGGGTAGTCCCGCCTGACCTGGGGTCACGTCGAGAGCGTCGTCCTTTTAAGGGGCAGCGTTCGAAGGGTCGTGAAGGAGTCCGTGAAGTCGATGTCGAGGTCGAGATGCGTCACCAAGGTTGA

Coding sequence (CDS)

ATGGGGCTCTCACCCTCTCTAGCGCCCCCTTCTAGGGGACTTATGCCCGATCCGCCGCTGAGGACGCTTGTCCAGACTACAATTCGGACGTCGACGATGCCTGATTCTCAAGCTGGGCTCTTCCCACGGGTAGTCCCGCCTGACCTGGGGTCACGTCGAGAGCGTCGTCCTTTTAAGGGGCAGCGTTCGAAGGGTCGTGAAGGAGTCCGTGAAGTCGATGTCGAGGTCGAGATGCGTCACCAAGGTTGA

Protein sequence

MGLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFPRVVPPDLGSRRERRPFKGQRSKGREGVREVDVEVEMRHQG*

Homology

[Close]

BLAST of MELO3C008486 vs. TrEMBL
Match: I1LXS9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-13
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 2     GLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFPRVVPPDLGSRRER 56
             GLSPSLAPPSRGL P PPLRTL+QTTIRT    D   GLFPRV PPDL SR ER
Sbjct: 16071 GLSPSLAPPSRGLGPGPPLRTLLQTTIRTPRATDFHGGLFPRVAPPDLRSRWER 16124

[Close]

BLAST of MELO3C008486 vs. TrEMBL
Match: M1DQG0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400042313 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 2   GLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFP 43
           GLSPSLAPPSRGL P PPLRTL+QTTIRT+  PDS+AGLFP
Sbjct: 284 GLSPSLAPPSRGLGPGPPLRTLLQTTIRTTEPPDSKAGLFP 324

[Close]

BLAST of MELO3C008486 vs. TrEMBL
Match: A0A0V0J2B7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 2   GLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFP 43
           GLSPSLAPPSRGL P PPLRTL+QTTIRT+  PDS+AGLFP
Sbjct: 141 GLSPSLAPPSRGLGPGPPLRTLLQTTIRTTEPPDSKAGLFP 181

[Close]

BLAST of MELO3C008486 vs. TrEMBL
Match: A0A072TFR3_MEDTR (Senescence-associated protein, putative OS=Medicago truncatula GN=MTR_0515s0020 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-09
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 3   LSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFPRVVPPDLGSRRER 56
           LSPSLAP S+GL P+ PLRTL+QTTI T    DS  GL PRV PPDL S  +R
Sbjct: 232 LSPSLAPLSKGLGPNSPLRTLLQTTIPTPRATDSHGGLIPRVAPPDLRSHHKR 284

[Close]

BLAST of MELO3C008486 vs. TrEMBL
Match: A0A0S3TE70_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.UMG104000 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-08
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 2   GLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFP 43
           GLSPSLAPPSRGL P PPLRTL+QTTIRT    DS  GLFP
Sbjct: 70  GLSPSLAPPSRGLGPGPPLRTLLQTTIRTPRATDSHGGLFP 110

[Close]

BLAST of MELO3C008486 vs. NCBI nr
Match: gi|971549220|ref|XP_015163876.1| (PREDICTED: uncharacterized protein LOC107060425 [Solanum tuberosum])

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 2   GLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFP 43
           GLSPSLAPPSRGL P PPLRTL+QTTIRT+  PDS+AGLFP
Sbjct: 141 GLSPSLAPPSRGLGPGPPLRTLLQTTIRTTEPPDSKAGLFP 181

[Close]

BLAST of MELO3C008486 vs. NCBI nr
Match: gi|694411929|ref|XP_009334308.1| (PREDICTED: protein TAR1-like [Pyrus x bretschneideri])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 2   GLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFPRVVPPDLG 51
           GLSPS APPS GL P PPLRTL+QTTIRT T PDSQAGLFP V  P LG
Sbjct: 115 GLSPSPAPPSSGLGPGPPLRTLLQTTIRTPTAPDSQAGLFP-VRSPLLG 162

[Close]

BLAST of MELO3C008486 vs. NCBI nr
Match: gi|694428216|ref|XP_009341690.1| (PREDICTED: uncharacterized protein LOC103933717 [Pyrus x bretschneideri])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 2   GLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFPRVVPPDLG 51
           GLSPS APPS GL P PPLRTL+QTTIRT T PDSQAGLFP V  P LG
Sbjct: 142 GLSPSPAPPSSGLGPGPPLRTLLQTTIRTPTAPDSQAGLFP-VRSPLLG 189

[Close]

BLAST of MELO3C008486 vs. NCBI nr
Match: gi|970008489|ref|XP_015065103.1| (PREDICTED: uncharacterized protein LOC107010340 [Solanum pennellii])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 2   GLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFPRVVPPDLG 51
           GLSPS APPSRGL P PPLRTL+QTTIRT+  PDS+AGLFP V  P LG
Sbjct: 141 GLSPSPAPPSRGLGPGPPLRTLLQTTIRTTEPPDSKAGLFP-VRSPLLG 188

[Close]

BLAST of MELO3C008486 vs. NCBI nr
Match: gi|970034121|ref|XP_015078370.1| (PREDICTED: protein TAR1-like [Solanum pennellii])

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-09
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 2   GLSPSLAPPSRGLMPDPPLRTLVQTTIRTSTMPDSQAGLFPRVVPPDLG 51
           GLSPS APPSRGL P PPLRTL+QTTI T+  PDS+AGLFP V+ P LG
Sbjct: 141 GLSPSPAPPSRGLRPGPPLRTLLQTTIGTTEPPDSKAGLFP-VLSPLLG 188

The following BLAST results are available for this feature:

BLAST of MELO3C008486 vs. TrEMBL


Match Name	E-value	Identity	Description
I1LXS9_SOYBN	3.7e-13	75.93	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
M1DQG0_SOLTU	5.0e-10	82.93	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400042313 PE=4 SV=1	[more]
A0A0V0J2B7_SOLCH	5.0e-10	82.93	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
A0A072TFR3_MEDTR	9.4e-09	64.15	Senescence-associated protein, putative OS=Medicago truncatula GN=MTR_0515s0020 ...	[more]
A0A0S3TE70_PHAAN	2.1e-08	78.05	Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.UM...	[more]

BLAST of MELO3C008486 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|971549220\|ref\|XP_015163876.1\|	7.1e-10	82.93	PREDICTED: uncharacterized protein LOC107060425 [Solanum tuberosum]	[more]
gi\|694411929\|ref\|XP_009334308.1\|	1.6e-09	77.55	PREDICTED: protein TAR1-like [Pyrus x bretschneideri]	[more]
gi\|694428216\|ref\|XP_009341690.1\|	1.6e-09	77.55	PREDICTED: uncharacterized protein LOC103933717 [Pyrus x bretschneideri]	[more]
gi\|970008489\|ref\|XP_015065103.1\|	3.5e-09	75.51	PREDICTED: uncharacterized protein LOC107010340 [Solanum pennellii]	[more]
gi\|970034121\|ref\|XP_015078370.1\|	4.6e-09	73.47	PREDICTED: protein TAR1-like [Solanum pennellii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008486T1	MELO3C008486T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33047	FAMILY NOT NAMED	coord: 2..55 score: 7.2
None	No IPR available	PANTHER	PTHR33047:SF4	SUBFAMILY NOT NAMED	coord: 2..55 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008486	Cucumber (Gy14) v2	cgybmeB408
MELO3C008486	Silver-seed gourd	carmeB0066
MELO3C008486	Silver-seed gourd	carmeB0824
MELO3C008486	Cucumber (Chinese Long) v3	cucmeB477
MELO3C008486	Watermelon (97103) v2	mewmbB308
MELO3C008486	Wax gourd	mewgoB323
MELO3C008486	Cucumber (Gy14) v1	cgymeB540
MELO3C008486	Cucurbita maxima (Rimu)	cmameB268
MELO3C008486	Cucurbita maxima (Rimu)	cmameB680
MELO3C008486	Cucurbita moschata (Rifu)	cmomeB259
MELO3C008486	Cucurbita moschata (Rifu)	cmomeB672
MELO3C008486	Wild cucumber (PI 183967)	cpimeB466
MELO3C008486	Cucumber (Chinese Long) v2	cumeB477
MELO3C008486	Watermelon (Charleston Gray)	mewcgB301
MELO3C008486	Watermelon (97103) v1	mewmB309
MELO3C008486	Cucurbita pepo (Zucchini)	cpemeB168
MELO3C008486	Cucurbita pepo (Zucchini)	cpemeB401
MELO3C008486	Bottle gourd (USVL1VR-Ls)	lsimeB475