MELO3C008463 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008463
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Guanine nucleotide-binding protein subunit beta
Location	chr3 : 6979733 .. 6980126 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGATGTAACTGACGACGACCGTCATCAAAAGCTGAATAAAATTGTTGAAGAAGACGTTTCAGGCCATTGTCGAGATGAGGGCTCAACAAGCAGTGACTTCGGCTGGAATGATGAGGTCAAGTGTATCATCGTCAAGAAGGACCTGTTCGACCATTGGATTCGGGTAAGAGTATGGAATTAATTAAATGAGTAACGAGTTTTTCTGGAATACTAATTACTTTGTTCTTTTTGTGTAAATTTTTCAGACGCACCCTATAGCGAAAGGACTCCTCAACAAGCCATTCTCGTATTACGACGAGCTATCGTACGCTCGAGAAAGATCCAGCCATAGGGGCTCATGTGGAGACCTTTACGGACATTGCATCCAATGTGCCGAGCGACAACGATAG

mRNA sequence

ATGCCAGATGTAACTGACGACGACCGTCATCAAAAGCTGAATAAAATTGTTGAAGAAGACGTTTCAGGCCATTGTCGAGATGAGGGCTCAACAAGCAGTGACTTCGGCTGGAATGATGAGGTCAAGTGTATCATCGTCAAGAAGGACCTGTTCGACCATTGGATTCGGACGCACCCTATAGCGAAAGGACTCCTCAACAAGCCATTCTCGTATTACGACGAGCTATCGTACGCTCGAGAAAGATCCAGCCATAGGGGCTCATGTGGAGACCTTTACGGACATTGCATCCAATGTGCCGAGCGACAACGATAG

Coding sequence (CDS)

ATGCCAGATGTAACTGACGACGACCGTCATCAAAAGCTGAATAAAATTGTTGAAGAAGACGTTTCAGGCCATTGTCGAGATGAGGGCTCAACAAGCAGTGACTTCGGCTGGAATGATGAGGTCAAGTGTATCATCGTCAAGAAGGACCTGTTCGACCATTGGATTCGGACGCACCCTATAGCGAAAGGACTCCTCAACAAGCCATTCTCGTATTACGACGAGCTATCGTACGCTCGAGAAAGATCCAGCCATAGGGGCTCATGTGGAGACCTTTACGGACATTGCATCCAATGTGCCGAGCGACAACGATAG

Protein sequence

MPDVTDDDRHQKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGDLYGHCIQCAERQR*

Homology

[Close]

BLAST of MELO3C008463 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 29  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSY--ARERSSHR 86
           G   S FGWNDE KCI+ +K+LFD+W+R+ P AKGLLN PF YYDEL+Y   R+R++ R
Sbjct: 403 GPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGR 461

[Close]

BLAST of MELO3C008463 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1


Query: 29  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSY 78
           G   S FGWNDE KCI+ +K++FD W  +HP AKGLLNK F +YDELSY
Sbjct: 440 GPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSY 486

[Close]

BLAST of MELO3C008463 vs. TrEMBL
Match: A0A0A9TMG5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 31  TSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSCGD 90
           ++  FGWND+ KCI+  KD+FD+W++ HP A+GL NKPF Y ++LS    +    G   +
Sbjct: 95  SAGGFGWNDKDKCIVCDKDIFDNWVKGHPSARGLSNKPFPYLEKLSIVFVKDRATGEAAE 154

Query: 91  LYGHCIQCAERQ 103
                ++  +++
Sbjct: 155 SPADVVEIIDKE 166

[Close]

BLAST of MELO3C008463 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-08
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 33 SDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRG 87
          S F WN ++KCII ++D+FD+W+RT+P  KGLLNK F +Y  LSY   +   +G
Sbjct: 34 SGFEWNGDMKCIIAERDMFDNWVRTYPATKGLLNKVFPHYGMLSYVFGKDHTKG 87

[Close]

BLAST of MELO3C008463 vs. TrEMBL
Match: A0A161XV48_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 29  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSC 88
           G   S FGWN+  K I  +K +F+ W+++HP AKGL NK F YYDELS    +    G C
Sbjct: 95  GPNCSGFGWNELDKSITCEKSIFEDWLKSHPNAKGLRNKSFPYYDELSQVFGKDRANGEC 154

[Close]

BLAST of MELO3C008463 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 29  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSY--ARERSSHR 86
           G   S FGWNDE KCI+ +K+LFD+W+R+ P AKGLLN PF YYDEL+Y   R+R++ R
Sbjct: 403 GPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGR 461

[Close]

BLAST of MELO3C008463 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-12
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 29 GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYA--RERSSHRG 87
          G + S FGWNDE KCII + DL D+W+R HP+AK LLNK F YYDEL+Y   ++R++ RG
Sbjct: 3  GPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATGRG 62

[Close]

BLAST of MELO3C008463 vs. NCBI nr
Match: gi|659133916|ref|XP_008466949.1| (PREDICTED: uncharacterized protein At2g29880-like, partial [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 29  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSY 78
           G   S FGWNDE KCI+ +K++FD W+++HP AKGLLNK F +YDELSY
Sbjct: 81  GPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSY 129

[Close]

BLAST of MELO3C008463 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1


Query: 29  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSYARERSSHRGSC 88
           G + S FGWN+E +CII ++DLFD WI++HP AKGLL+K F YYD+LSY   +    G+ 
Sbjct: 86  GPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGAR 145

Query: 89  GDLY 93
            + +
Sbjct: 146 SETF 149

[Close]

BLAST of MELO3C008463 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 29  GSTSSDFGWNDEVKCIIVKKDLFDHWIRTHPIAKGLLNKPFSYYDELSY 78
           G T S FGWNDE KCI+ +K++FD W+++HP+AKGLLNK F +YDE  Y
Sbjct: 259 GPTCSGFGWNDEQKCIVTEKEVFDDWVKSHPVAKGLLNKSFPHYDERLY 307

The following BLAST results are available for this feature:

BLAST of MELO3C008463 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	1.3e-12	59.32	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	1.4e-09	63.27	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A9TMG5_ARUDO	1.5e-08	36.11	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A0A0KQ83_CUCSA	2.6e-08	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1	[more]
A0A161XV48_DAUCA	1.3e-07	46.67	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1	[more]

BLAST of MELO3C008463 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135889\|gb\|ADN33754.1\|	1.9e-12	59.32	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659068476\|ref\|XP_008444620.1\|	4.3e-12	58.33	PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo]	[more]
gi\|659133916\|ref\|XP_008466949.1\|	1.6e-11	63.27	PREDICTED: uncharacterized protein At2g29880-like, partial [Cucumis melo]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	2.1e-11	50.00	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659111306\|ref\|XP_008455685.1\|	2.8e-11	61.22	PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008463T1	MELO3C008463T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008463	Cucumber (Gy14) v1	cgymeB540
MELO3C008463	Cucurbita maxima (Rimu)	cmameB268
MELO3C008463	Cucurbita maxima (Rimu)	cmameB680
MELO3C008463	Cucurbita moschata (Rifu)	cmomeB259
MELO3C008463	Cucurbita moschata (Rifu)	cmomeB672
MELO3C008463	Wild cucumber (PI 183967)	cpimeB466
MELO3C008463	Cucumber (Chinese Long) v2	cumeB473
MELO3C008463	Watermelon (Charleston Gray)	mewcgB301
MELO3C008463	Watermelon (97103) v1	mewmB309
MELO3C008463	Cucurbita pepo (Zucchini)	cpemeB168
MELO3C008463	Cucurbita pepo (Zucchini)	cpemeB401
MELO3C008463	Bottle gourd (USVL1VR-Ls)	lsimeB475
MELO3C008463	Cucumber (Gy14) v2	cgybmeB408
MELO3C008463	Silver-seed gourd	carmeB0066
MELO3C008463	Silver-seed gourd	carmeB0824
MELO3C008463	Cucumber (Chinese Long) v3	cucmeB477
MELO3C008463	Watermelon (97103) v2	mewmbB308
MELO3C008463	Wax gourd	mewgoB323