MELO3C008361 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008361
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ABC transporter of the mitochondrion 1
Location	chr3 : 4415697 .. 4416035 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCACACTTAGTTTTTGCCATTTTGATCGTGGCTGTAATTTCAACAAGTTCACCTTGGAGAGCCTTCGCTGACGAACGCTACGACTACCGTCTCTCTTATTCTCCTCTGCCGCCGCTTCATCAACGAATAATCCTCTTCTTCAGCCACCACGTCTCTTCCTCACCGCGGTCGTGGTCGAATAACTGGTCTTCCCGGAAACTACTCCGCCATATAAAGGCTGAGCGTAAATACAACTGCCTCAAAGAACCTGAAAAACAATATAAAGATCCAGCGAATAGTCAAGAACCTTGGCCAAGGTGCCCCATGCCTGCATTTTCACCACCTCCATTCTAG

mRNA sequence

ATGGCGGCACACTTAGTTTTTGCCATTTTGATCGTGGCTGTAATTTCAACAAGTTCACCTTGGAGAGCCTTCGCTGACGAACGCTACGACTACCGTCTCTCTTATTCTCCTCTGCCGCCGCTTCATCAACGAATAATCCTCTTCTTCAGCCACCACGTCTCTTCCTCACCGCGGTCGTGGTCGAATAACTGGTCTTCCCGGAAACTACTCCGCCATATAAAGGCTGAGCGTAAATACAACTGCCTCAAAGAACCTGAAAAACAATATAAAGATCCAGCGAATAGTCAAGAACCTTGGCCAAGGTGCCCCATGCCTGCATTTTCACCACCTCCATTCTAG

Coding sequence (CDS)

ATGGCGGCACACTTAGTTTTTGCCATTTTGATCGTGGCTGTAATTTCAACAAGTTCACCTTGGAGAGCCTTCGCTGACGAACGCTACGACTACCGTCTCTCTTATTCTCCTCTGCCGCCGCTTCATCAACGAATAATCCTCTTCTTCAGCCACCACGTCTCTTCCTCACCGCGGTCGTGGTCGAATAACTGGTCTTCCCGGAAACTACTCCGCCATATAAAGGCTGAGCGTAAATACAACTGCCTCAAAGAACCTGAAAAACAATATAAAGATCCAGCGAATAGTCAAGAACCTTGGCCAAGGTGCCCCATGCCTGCATTTTCACCACCTCCATTCTAG

Protein sequence

MAAHLVFAILIVAVISTSSPWRAFADERYDYRLSYSPLPPLHQRIILFFSHHVSSSPRSWSNNWSSRKLLRHIKAERKYNCLKEPEKQYKDPANSQEPWPRCPMPAFSPPPF*

Homology

[Close]

BLAST of MELO3C008361 vs. TrEMBL
Match: A0A0A0KCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058710 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-45
Identity = 91/112 (81.25%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MAAHLVFAILIVAVISTSSPWRAFADERYDYRLSYSPLPPLHQRIILFFSHHVSSSPRSW 60
           MAAH VFAIL+VAVIS +SPWRA ADERYDY LS SPL PLH  IILFFSHHVS SP SW
Sbjct: 1   MAAHFVFAILVVAVISPTSPWRASADERYDYLLSSSPLLPLHHPIILFFSHHVSPSPWSW 60

Query: 61  SNNWSSRKLLRHIKAERKYNCLKEPEKQYKDPANSQEPWPRCPMPAFSPPPF 113
           SN  SSRKLLRHI  ERKYNCLKEPEKQ+KDP +SQ+PWPRCPMPAF PPPF
Sbjct: 61  SNR-SSRKLLRHINPERKYNCLKEPEKQFKDPVSSQKPWPRCPMPAFPPPPF 111

[Close]

BLAST of MELO3C008361 vs. TrEMBL
Match: A0A0A0KEF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-07
Identity = 36/110 (32.73%), Postives = 52/110 (47.27%), Query Frame = 1


Query: 3   AHLVFAILIVAVISTSSPWRAFADERYDYRLSYSPLPPLHQRIILFFSHHVSSSPRSWSN 62
           A+L  AIL+     + S     A     Y + Y P  P   R +LF + H S  P   + 
Sbjct: 6   AYLFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLP---RPLLFHNDHSSLPPSPAAE 65

Query: 63  NWSSRKLLRHIKAERKYNCLKEPEKQYKDPANSQEPWPRCPMPAFSPPPF 113
            + + K  R +  ERK  C + P    KD   +++PWP+CP+P   PPPF
Sbjct: 66  EYPA-KSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

[Close]

BLAST of MELO3C008361 vs. NCBI nr
Match: gi|700190953|gb|KGN46157.1| (hypothetical protein Csa_6G058710 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45
Identity = 91/112 (81.25%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MAAHLVFAILIVAVISTSSPWRAFADERYDYRLSYSPLPPLHQRIILFFSHHVSSSPRSW 60
           MAAH VFAIL+VAVIS +SPWRA ADERYDY LS SPL PLH  IILFFSHHVS SP SW
Sbjct: 1   MAAHFVFAILVVAVISPTSPWRASADERYDYLLSSSPLLPLHHPIILFFSHHVSPSPWSW 60

Query: 61  SNNWSSRKLLRHIKAERKYNCLKEPEKQYKDPANSQEPWPRCPMPAFSPPPF 113
           SN  SSRKLLRHI  ERKYNCLKEPEKQ+KDP +SQ+PWPRCPMPAF PPPF
Sbjct: 61  SNR-SSRKLLRHINPERKYNCLKEPEKQFKDPVSSQKPWPRCPMPAFPPPPF 111

[Close]

BLAST of MELO3C008361 vs. NCBI nr
Match: gi|700190952|gb|KGN46156.1| (hypothetical protein Csa_6G058700 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 36/110 (32.73%), Postives = 52/110 (47.27%), Query Frame = 1


Query: 3   AHLVFAILIVAVISTSSPWRAFADERYDYRLSYSPLPPLHQRIILFFSHHVSSSPRSWSN 62
           A+L  AIL+     + S     A     Y + Y P  P   R +LF + H S  P   + 
Sbjct: 6   AYLFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLP---RPLLFHNDHSSLPPSPAAE 65

Query: 63  NWSSRKLLRHIKAERKYNCLKEPEKQYKDPANSQEPWPRCPMPAFSPPPF 113
            + + K  R +  ERK  C + P    KD   +++PWP+CP+P   PPPF
Sbjct: 66  EYPA-KSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

The following BLAST results are available for this feature:

BLAST of MELO3C008361 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCN7_CUCSA	1.7e-45	81.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058710 PE=4 SV=1	[more]
A0A0A0KEF9_CUCSA	7.0e-07	32.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058700 PE=4 SV=1	[more]

BLAST of MELO3C008361 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190953\|gb\|KGN46157.1\|	2.4e-45	81.25	hypothetical protein Csa_6G058710 [Cucumis sativus]	[more]
gi\|700190952\|gb\|KGN46156.1\|	1.0e-06	32.73	hypothetical protein Csa_6G058700 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008361T1	MELO3C008361T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008361	Cucurbita maxima (Rimu)	cmameB268
MELO3C008361	Cucurbita maxima (Rimu)	cmameB680
MELO3C008361	Cucurbita moschata (Rifu)	cmomeB259
MELO3C008361	Cucurbita moschata (Rifu)	cmomeB672
MELO3C008361	Wild cucumber (PI 183967)	cpimeB469
MELO3C008361	Cucumber (Chinese Long) v2	cumeB469
MELO3C008361	Watermelon (Charleston Gray)	mewcgB301
MELO3C008361	Watermelon (97103) v1	mewmB309
MELO3C008361	Cucurbita pepo (Zucchini)	cpemeB168
MELO3C008361	Cucurbita pepo (Zucchini)	cpemeB401
MELO3C008361	Bottle gourd (USVL1VR-Ls)	lsimeB475
MELO3C008361	Cucumber (Gy14) v2	cgybmeB411
MELO3C008361	Silver-seed gourd	carmeB0066
MELO3C008361	Silver-seed gourd	carmeB0824
MELO3C008361	Cucumber (Chinese Long) v3	cucmeB480
MELO3C008361	Watermelon (97103) v2	mewmbB308
MELO3C008361	Wax gourd	mewgoB323
MELO3C008361	Cucumber (Gy14) v1	cgymeB591