MELO3C008353 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008353
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	30S ribosomal protein S4
Location	chr3 : 4286269 .. 4286871 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAAACAATTTGCACCAGTCATCTATGGGTTGGAAGATTTGGGATTTCTCTTACGAGGCTGATAAGACAGGTCAAGGTGCAAGAAGCAGTAGAAGCATGGAAGGTTGTAAGAAGAATAAAGAGTCTACGACATTGCGAGGGTACTATAAATCAGTACAACATTTGGAGAGCTACTAGAAGTGGGGTTGAACTAGTTATTGCCCCACAATCTTTGGATCCCAACAATGTTTTTAGAATAAATCATGATGATCAAGAAAAGGACTTGAAACAGTTGAGAGAGAGGAACCAGGTCCTAGCAACGGAGAATGAGGGGCTGAGGGAAGAAGTCAAACGATGGGTACAACAAGCTACAACTTTTCAGAGATAATTGGAAGAAGCCAAACGACATCTTCAAAGACAGTTAGAGTTGGAGAAGGACATGGATTCTTTAAACATTGAGGCTATTCAGATAAGGAAGAAAAATAAGAGACTATTAAAAGATATTGCTACTTTGGATAATAAAGCTGAAGCTCAAAAGGTGTGCATCAGGAAATTGAAGCATGAGTTGGAAAGAGTGAACAAGGTTGCTGTAGATTTTCAAAGTGCATTGGATCAGTAA

mRNA sequence

ATGGTCAAAACAATTTGCACCAGTCATCTATGGGTTGGAAGATTTGGGATTTCTCTTACGAGGCTGATAAGACAGGTCAAGGTGCAAGAAGCAGTAGAAGCATGGAAGGTTGTAAGAAGAATAAAGAGTCTACGACATTGCGAGGGTACTATAAATCAGTACAACATTTGGAGAGCTACTAGAAGTGGGGTTGAACTAGTTATTGCCCCACAATCTTTGGATCCCAACAATGTTTTTAGAATAAATCATGATGATCAAGAAAAGGACTTGAAACAGTTGAGAGAGAGGAACCAGGTCCTAGCAACGGAGAATGAGGGGCTGAGGGAAGAAGTCAAACGATGGTTAGAGTTGGAGAAGGACATGGATTCTTTAAACATTGAGGCTATTCAGATAAGGAAGAAAAATAAGAGACTATTAAAAGATATTGCTACTTTGGATAATAAAGCTGAAGCTCAAAAGGTGTGCATCAGGAAATTGAAGCATGAGTTGGAAAGAGTGAACAAGGTTGCTGTAGATTTTCAAAGTGCATTGGATCAGTAA

Coding sequence (CDS)

ATGGTCAAAACAATTTGCACCAGTCATCTATGGGTTGGAAGATTTGGGATTTCTCTTACGAGGCTGATAAGACAGGTCAAGGTGCAAGAAGCAGTAGAAGCATGGAAGGTTGTAAGAAGAATAAAGAGTCTACGACATTGCGAGGGTACTATAAATCAGTACAACATTTGGAGAGCTACTAGAAGTGGGGTTGAACTAGTTATTGCCCCACAATCTTTGGATCCCAACAATGTTTTTAGAATAAATCATGATGATCAAGAAAAGGACTTGAAACAGTTGAGAGAGAGGAACCAGGTCCTAGCAACGGAGAATGAGGGGCTGAGGGAAGAAGTCAAACGATGGTTAGAGTTGGAGAAGGACATGGATTCTTTAAACATTGAGGCTATTCAGATAAGGAAGAAAAATAAGAGACTATTAAAAGATATTGCTACTTTGGATAATAAAGCTGAAGCTCAAAAGGTGTGCATCAGGAAATTGAAGCATGAGTTGGAAAGAGTGAACAAGGTTGCTGTAGATTTTCAAAGTGCATTGGATCAGTAA

Protein sequence

MVKTICTSHLWVGRFGISLTRLIRQVKVQEAVEAWKVVRRIKSLRHCEGTINQYNIWRATRSGVELVIAPQSLDPNNVFRINHDDQEKDLKQLRERNQVLATENEGLREEVKRWLELEKDMDSLNIEAIQIRKKNKRLLKDIATLDNKAEAQKVCIRKLKHELERVNKVAVDFQSALDQ*

Homology

[Close]

BLAST of MELO3C008353 vs. TrEMBL
Match: A0A0A0LWU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328390 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-25
Identity = 67/104 (64.42%), Postives = 79/104 (75.96%), Query Frame = 1


Query: 97  NQVLATENEGLREEVKRWL---------------------ELEKDMDSLNIEAIQIRKKN 156
           + VLATENEGLR+EVKRW+                     ELEKDM+SLNIEAIQIRKKN
Sbjct: 2   SHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKKN 61

Query: 157 KRLLKDIATLDNKAEAQKVCIRKLKHELERVNKVAVDFQSALDQ 180
           KRLL+DIAT+ ++AEAQKVCIR+LK ELERV+KV +DFQSALD+
Sbjct: 62  KRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDE 105

[Close]

BLAST of MELO3C008353 vs. TrEMBL
Match: A0A0A0KP72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528450 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 26  VKVQEAVEAWKVVRRIKSLRHCEGTINQYNIWRATRSGVELVIAPQ 72
           VKVQE +E WKVVRR+KSLRHC+GT NQY+IWRA R+G E    PQ
Sbjct: 72  VKVQEVIETWKVVRRLKSLRHCKGTTNQYDIWRADRNGFEFATIPQ 117

[Close]

BLAST of MELO3C008353 vs. NCBI nr
Match: gi|700210231|gb|KGN65327.1| (hypothetical protein Csa_1G328390 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 67/104 (64.42%), Postives = 79/104 (75.96%), Query Frame = 1


Query: 97  NQVLATENEGLREEVKRWL---------------------ELEKDMDSLNIEAIQIRKKN 156
           + VLATENEGLR+EVKRW+                     ELEKDM+SLNIEAIQIRKKN
Sbjct: 2   SHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKKN 61

Query: 157 KRLLKDIATLDNKAEAQKVCIRKLKHELERVNKVAVDFQSALDQ 180
           KRLL+DIAT+ ++AEAQKVCIR+LK ELERV+KV +DFQSALD+
Sbjct: 62  KRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDE 105

[Close]

BLAST of MELO3C008353 vs. NCBI nr
Match: gi|659128749|ref|XP_008464352.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 71  QSLDPNNVFRINHDDQEKDLKQLRERNQVLATENEGLREEVKRW---------------- 130
           +SL PN   +  HD QEK+LK+LRE N VLATENE LREEVK+W                
Sbjct: 3   ESLVPNIELKKYHD-QEKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKR 62

Query: 131 --LELEKDMDSLNIEAIQIRKKNKRLLKDIATLDNKAEAQK 154
             LELEK+ DSLN EAIQ+RKKNKRLL++IA L  + EA+K
Sbjct: 63  KRLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEK 102

[Close]

BLAST of MELO3C008353 vs. NCBI nr
Match: gi|700196231|gb|KGN51408.1| (hypothetical protein Csa_5G528450 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 26  VKVQEAVEAWKVVRRIKSLRHCEGTINQYNIWRATRSGVELVIAPQ 72
           VKVQE +E WKVVRR+KSLRHC+GT NQY+IWRA R+G E    PQ
Sbjct: 72  VKVQEVIETWKVVRRLKSLRHCKGTTNQYDIWRADRNGFEFATIPQ 117

[Close]

BLAST of MELO3C008353 vs. NCBI nr
Match: gi|659131250|ref|XP_008465588.1| (PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-09
Identity = 43/140 (30.71%), Postives = 72/140 (51.43%), Query Frame = 1


Query: 25  QVKVQEAVEAWKVVRRIKSLRHCEGTINQYNIWRATRSGVELVIAPQSLDPNNVFRINHD 84
           Q K ++AV AWK +R+IK   H EG  ++Y  W+A R    + I+ + ++          
Sbjct: 51  QGKKRQAVCAWKSIRKIKDKGHYEGVTSEYETWQANRRNNIIDISREVVERGKETSFEQP 110

Query: 85  DQ--EKDLKQLRERNQVLATENEGLREEVKRWLELEKDMDSLNIEAIQIRKKNKRLLKDI 144
           +Q  EK +K L+E+N++L  ENE LR+E  +W++    + +   +     K   +L KD+
Sbjct: 111 NQRIEKSIK-LKEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLEKDL 170

Query: 145 ATLDNKAEAQKVCIRKLKHE 163
            T D +        R LK+E
Sbjct: 171 ETSDKEMRRMNKANRSLKNE 189

The following BLAST results are available for this feature:

BLAST of MELO3C008353 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWU7_CUCSA	1.4e-25	64.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328390 PE=4 SV=1	[more]
A0A0A0KP72_CUCSA	1.7e-10	69.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528450 PE=4 SV=1	[more]

BLAST of MELO3C008353 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210231\|gb\|KGN65327.1\|	2.0e-25	64.42	hypothetical protein Csa_1G328390 [Cucumis sativus]	[more]
gi\|659128749\|ref\|XP_008464352.1\|	2.9e-16	55.45	PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis...	[more]
gi\|700196231\|gb\|KGN51408.1\|	2.4e-10	69.57	hypothetical protein Csa_5G528450 [Cucumis sativus]	[more]
gi\|659131250\|ref\|XP_008465588.1\|	3.4e-09	30.71	PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008353T1	MELO3C008353T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 121..141 score: -coord: 76..110 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008353	Cucumber (Gy14) v1	cgymeB591
MELO3C008353	Cucurbita maxima (Rimu)	cmameB268
MELO3C008353	Cucurbita maxima (Rimu)	cmameB680
MELO3C008353	Cucurbita moschata (Rifu)	cmomeB259
MELO3C008353	Cucurbita moschata (Rifu)	cmomeB672
MELO3C008353	Wild cucumber (PI 183967)	cpimeB469
MELO3C008353	Cucumber (Chinese Long) v2	cumeB469
MELO3C008353	Watermelon (Charleston Gray)	mewcgB301
MELO3C008353	Watermelon (97103) v1	mewmB309
MELO3C008353	Cucurbita pepo (Zucchini)	cpemeB168
MELO3C008353	Cucurbita pepo (Zucchini)	cpemeB401
MELO3C008353	Bottle gourd (USVL1VR-Ls)	lsimeB475
MELO3C008353	Cucumber (Gy14) v2	cgybmeB411
MELO3C008353	Silver-seed gourd	carmeB0066
MELO3C008353	Silver-seed gourd	carmeB0824
MELO3C008353	Cucumber (Chinese Long) v3	cucmeB065
MELO3C008353	Cucumber (Chinese Long) v3	cucmeB480
MELO3C008353	Watermelon (97103) v2	mewmbB308
MELO3C008353	Wax gourd	mewgoB323