MELO3C008311 (gene) Melon (DHL92) v3.5.1

NameMELO3C008311
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Locationchr3 : 3443728 .. 3444165 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCTCACCACCAAAAACTGTAACTTCTTCAAAGGGTAAACGCTACAAGGGTATCCCAACGAAACATCCGTATAAGAAAATTCATCGGTCTGTTCCGCCTACTGAGGAAGGTCAGCACTGTCAAGTACCCATCCCTGTCCATTGCTCACATGCAGGGTGCTCTTCTAACCCTGGATCTCTTATTACTGTCAAAAAGGAAGTCCCTGAGTTTTCTCCACCACGCACATCCCATCTCTCTACGTCCTCCTCTGTGCCAGAACCTAGGGTTTCTATTGAGACAGTGGTATTAGATTCTGATTCCTCTGACAGTAAAGACAATGTGGTGTTGTCAACCCTTCTCCATCGTAAGGTAGGGTCTCGTTCTGGTCAATCCCCACCACGGGAAACATCTCTTCCTACGGAGGATCTGTCTTGGCCTACTGGCCATGGTTAG

mRNA sequence

ATGGCTCTCTCACCACCAAAAACTGTAACTTCTTCAAAGGGTAAACGCTACAAGGGTATCCCAACGAAACATCCGTATAAGAAAATTCATCGGTCTGTTCCGCCTACTGAGGAAGGTCAGCACTGTCAAGTACCCATCCCTGTCCATTGCTCACATGCAGGGTGCTCTTCTAACCCTGGATCTCTTATTACTGTCAAAAAGGAAGTCCCTGAGTTTTCTCCACCACGCACATCCCATCTCTCTACGTCCTCCTCTGTGCCAGAACCTAGGGTTTCTATTGAGACAGTGGTATTAGATTCTGATTCCTCTGACAGTAAAGACAATGTGGTGTTGTCAACCCTTCTCCATCGTAAGGTAGGGTCTCGTTCTGGTCAATCCCCACCACGGGAAACATCTCTTCCTACGGAGGATCTGTCTTGGCCTACTGGCCATGGTTAG

Coding sequence (CDS)

ATGGCTCTCTCACCACCAAAAACTGTAACTTCTTCAAAGGGTAAACGCTACAAGGGTATCCCAACGAAACATCCGTATAAGAAAATTCATCGGTCTGTTCCGCCTACTGAGGAAGGTCAGCACTGTCAAGTACCCATCCCTGTCCATTGCTCACATGCAGGGTGCTCTTCTAACCCTGGATCTCTTATTACTGTCAAAAAGGAAGTCCCTGAGTTTTCTCCACCACGCACATCCCATCTCTCTACGTCCTCCTCTGTGCCAGAACCTAGGGTTTCTATTGAGACAGTGGTATTAGATTCTGATTCCTCTGACAGTAAAGACAATGTGGTGTTGTCAACCCTTCTCCATCGTAAGGTAGGGTCTCGTTCTGGTCAATCCCCACCACGGGAAACATCTCTTCCTACGGAGGATCTGTCTTGGCCTACTGGCCATGGTTAG

Protein sequence

MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPGSLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRKVGSRSGQSPPRETSLPTEDLSWPTGHG*
BLAST of MELO3C008311 vs. NCBI nr
Match: gi|659082052|ref|XP_008441642.1| (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-62
Identity = 125/140 (89.29%), Postives = 128/140 (91.43%), Query Frame = 1

Query: 1   MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 60
           MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG
Sbjct: 162 MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 221

Query: 61  SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRKVG 120
           SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRK  
Sbjct: 222 SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRK-- 281

Query: 121 SRSGQSPPR---ETSLPTED 138
           S +  S P    + SLPT +
Sbjct: 282 SSAAPSSPHAFPQASLPTNE 299

BLAST of MELO3C008311 vs. NCBI nr
Match: gi|659118726|ref|XP_008459271.1| (PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 4.0e-32
Identity = 80/137 (58.39%), Postives = 98/137 (71.53%), Query Frame = 1

Query: 6   PKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPGSLITV 65
           PK +TSSKGKRYKGIPTKHPYKK+ +S+     G++  V  P H S+A  S+NP S +TV
Sbjct: 33  PKLITSSKGKRYKGIPTKHPYKKVRKSIL---SGEYSTVSSPAHSSYAERSANPPSPVTV 92

Query: 66  KKEVPEFSPPRTSHLSTSSSV------PEPRVSIETVVLDSDSSDSKDNVVLSTLLHRKV 125
           K+EV EFS P++ H S SSSV      PEPRVS+ETVVLDSDSSDS DNV+LSTLLHR  
Sbjct: 93  KEEVLEFSSPQSVHPSVSSSVPKSLSRPEPRVSVETVVLDSDSSDSDDNVILSTLLHRTR 152

Query: 126 GSRSGQ--SPPRETSLP 135
            +R+ Q  SP +  + P
Sbjct: 153 SARNNQTTSPAKPQAFP 166

BLAST of MELO3C008311 vs. NCBI nr
Match: gi|659114605|ref|XP_008457140.1| (PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 8.4e-30
Identity = 74/126 (58.73%), Postives = 91/126 (72.22%), Query Frame = 1

Query: 7   KTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPGSLITVK 66
           K+ TSSKGKRYKGI TKHPYKK+ +S+     G++  VP P H SH   S+NP S +TVK
Sbjct: 34  KSTTSSKGKRYKGISTKHPYKKVRKSI---SSGEYSTVPSPAHSSHVERSANPPSPVTVK 93

Query: 67  KEVPEFSPPRTSHLSTSSSV------PEPRVSIETVVLDSDSSDSKDNVVLSTLLHRKVG 126
           +EV EFS P+++  S SSSV      PEPRVS+ETVVLD +SSDS DNV+LSTLLHR   
Sbjct: 94  EEVLEFSSPQSARPSVSSSVSKLPSRPEPRVSVETVVLDFNSSDSDDNVILSTLLHRTRS 153

BLAST of MELO3C008311 vs. NCBI nr
Match: gi|659126154|ref|XP_008463038.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-27
Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 1

Query: 1   MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 60
           M  +  K+ T SKGKRYKGIPTKH YKK+ +S+P    G++  VP P H S+A    NP 
Sbjct: 1   MDTAAAKSTTFSKGKRYKGIPTKHLYKKVRKSIP---SGENSAVPSPEHSSNAERLENPP 60

Query: 61  SLITVKKEVPEFSPPRTS------HLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTL 120
           S +TVK+EV EFS P+++       +  SSS PEPRVS+ETV+LDSDSS+S+DN+VLSTL
Sbjct: 61  SPVTVKEEVLEFSSPQSALPSVSLSIPKSSSRPEPRVSVETVILDSDSSNSEDNIVLSTL 120

Query: 121 LHRKVGSRSGQS 127
           LHR    RS Q+
Sbjct: 121 LHRTRSVRSNQT 129

BLAST of MELO3C008311 vs. NCBI nr
Match: gi|659072220|ref|XP_008464058.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 8.7e-19
Identity = 64/136 (47.06%), Postives = 82/136 (60.29%), Query Frame = 1

Query: 1   MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 60
           +A SPPK+ T+SKGKRYKGIPTKHPYKK+ RSV  T EG H  +  PV  SHAG  S+P 
Sbjct: 70  IAPSPPKSATTSKGKRYKGIPTKHPYKKVRRSVTATAEGLHSPLTSPVRSSHAGRPSDPV 129

Query: 61  SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRKVG 120
           S +TVKKEVPE       H + SS+  +PR +  +     D+S SK+    +T   +   
Sbjct: 130 SPVTVKKEVPEVG----HHNNVSSTPLQPRPTSSSP--PRDTSLSKEGPPQTT--DQSKS 189

Query: 121 SRSGQSPPRETSLPTE 137
           S +  SP    SLPT+
Sbjct: 190 STASSSP--SGSLPTD 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659082052|ref|XP_008441642.1|1.3e-6289.29PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
gi|659118726|ref|XP_008459271.1|4.0e-3258.39PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo][more]
gi|659114605|ref|XP_008457140.1|8.4e-3058.73PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo][more]
gi|659126154|ref|XP_008463038.1|1.0e-2754.55PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|659072220|ref|XP_008464058.1|8.7e-1947.06PREDICTED: putative protein TPRXL [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008311T1MELO3C008311T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008311Cucumber (Chinese Long) v3cucmeB289
MELO3C008311Cucumber (Chinese Long) v3cucmeB476
MELO3C008311Watermelon (97103) v2mewmbB282
MELO3C008311Watermelon (97103) v2mewmbB290
MELO3C008311Wax gourdmewgoB341
MELO3C008311Melon (DHL92) v3.5.1memeB069
MELO3C008311Cucumber (Gy14) v1cgymeB221
MELO3C008311Cucurbita maxima (Rimu)cmameB267
MELO3C008311Cucurbita maxima (Rimu)cmameB598
MELO3C008311Cucurbita maxima (Rimu)cmameB679
MELO3C008311Cucurbita maxima (Rimu)cmameB682
MELO3C008311Cucurbita maxima (Rimu)cmameB683
MELO3C008311Cucurbita maxima (Rimu)cmameB785
MELO3C008311Cucurbita moschata (Rifu)cmomeB258
MELO3C008311Cucurbita moschata (Rifu)cmomeB589
MELO3C008311Cucurbita moschata (Rifu)cmomeB671
MELO3C008311Cucurbita moschata (Rifu)cmomeB675
MELO3C008311Wild cucumber (PI 183967)cpimeB282
MELO3C008311Wild cucumber (PI 183967)cpimeB465
MELO3C008311Cucumber (Chinese Long) v2cumeB292
MELO3C008311Cucumber (Chinese Long) v2cumeB467
MELO3C008311Watermelon (Charleston Gray)mewcgB272
MELO3C008311Watermelon (Charleston Gray)mewcgB285
MELO3C008311Watermelon (97103) v1mewmB325
MELO3C008311Watermelon (97103) v1mewmB328
MELO3C008311Cucurbita pepo (Zucchini)cpemeB167
MELO3C008311Cucurbita pepo (Zucchini)cpemeB403
MELO3C008311Cucurbita pepo (Zucchini)cpemeB400
MELO3C008311Bottle gourd (USVL1VR-Ls)lsimeB133
MELO3C008311Bottle gourd (USVL1VR-Ls)lsimeB259
MELO3C008311Cucumber (Gy14) v2cgybmeB244
MELO3C008311Cucumber (Gy14) v2cgybmeB407
MELO3C008311Silver-seed gourdcarmeB0023
MELO3C008311Silver-seed gourdcarmeB0267
MELO3C008311Silver-seed gourdcarmeB0559
MELO3C008311Silver-seed gourdcarmeB0665