MELO3C008226 (gene) Melon (DHL92) v3.5.1

NameMELO3C008226
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionE3 ubiquitin protein ligase DRIP2
Locationchr3 : 2118464 .. 2119337 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTACTTACACTGATCTTTGGTTCCAGGGAAGGAGATGTATCGTTGCCGCAAATTCCTGCTAAGTATTTGAGAATAAAGTAAACTCAGTTTTAACACTCGTTCAATATAGACACCCCCTACTTATTCTTATTTTAGATGTCAAGTAATTTTATCATATATTACTAAGGTGTATACAAGCACCTTTCATGTCTATTTCTTTCAGCCTAACTAAAAGTTTCTCCATGACTTTTGTAAATGGTTATTATTTTTTATCTTAGACCAAGAAGTCTCAATTATACCTTTGCTTGCACACATCGTGTACGTGAGAAAATTGATACTTAAACTGTTTGTAGAAGTGCCATCGTTGATAATAAACCCTGCTAATTTCTTCGCTCCTCACTCTGAATGTTTGGATTTGTAAAACCACCATTGTTGATGCTTAGACCATGTTAACTTCTTCGCTTGGTGCTCTGTGCGTTTGGGTTTGTAAAAACACCATTGTTAAGACTTAAATCCGCACTAAGTTATTTGATTGTTACTCTGGACGTTTGGGTTTTTAAAAATACCATTCTTGACTAGGAGTTCATTCAAAGTATATATTGTTATATTTTTAGTTTTTTTCACAGGGGCAGAAACTTGCCAATATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCACCCAAGTGAATCGGAGGTGAAAACAAAATCTCATATTCTTTAGTTTAATTGAAACTCTAATCTAAGAGCCTTTCCTGTTCATACTTGGACTTGTCATTTTATGTCTTATGTTTGTGGATTTATATTTGCAGGTTGAAGTCAAGCATATGGGACATCCAGTAGTTCACACACTAGATTTGCATAGTTTAGTTGATTTGTGGCTATAA

mRNA sequence

ATGCCTCTACTTACACTGATCTTTGGTTCCAGGGAAGGAGATGTATCGTTGCCGCAAATTCCTGCTAAGTATTTGAGAATAAAGGGCAGAAACTTGCCAATATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCACCCAAGTGAATCGGAGGTTGAAGTCAAGCATATGGGACATCCAGTAGTTCACACACTAGATTTGCATAGTTTAGTTGATTTGTGGCTATAA

Coding sequence (CDS)

ATGCCTCTACTTACACTGATCTTTGGTTCCAGGGAAGGAGATGTATCGTTGCCGCAAATTCCTGCTAAGTATTTGAGAATAAAGGGCAGAAACTTGCCAATATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCACCCAAGTGAATCGGAGGTTGAAGTCAAGCATATGGGACATCCAGTAGTTCACACACTAGATTTGCATAGTTTAGTTGATTTGTGGCTATAA

Protein sequence

MPLLTLIFGSREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLHSLVDLWL*
BLAST of MELO3C008226 vs. Swiss-Prot
Match: DRIP2_ARATH (E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-20
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1

Query: 10  SREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLH 69
           ++EG+ SLPQIPA YLRI+  N+P+SF+QKYLMRKLD  SE EVE+  MG PV+ TL LH
Sbjct: 319 NQEGEASLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSEDEVEITCMGEPVIPTLQLH 378

Query: 70  SLVDLWL 77
           SLVDLWL
Sbjct: 379 SLVDLWL 385

BLAST of MELO3C008226 vs. Swiss-Prot
Match: DRIP1_ARATH (E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1 PE=1 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 9.5e-17
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1

Query: 11  REGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLHS 70
           +EG  SLPQIPA +LRI+  N  +SF+QKYLMRKLD  SE+E+E+K MG  V+ TL L++
Sbjct: 321 QEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLESENEIEIKCMGEAVIPTLTLYN 380

Query: 71  LVDLWL 77
           LVDLWL
Sbjct: 381 LVDLWL 386

BLAST of MELO3C008226 vs. Swiss-Prot
Match: DRIPH_ARATH (Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana GN=At3g23060 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-07
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1

Query: 14  DVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLHSLVD 73
           ++ LP I A  +R+K  N+ +S+++KYLM KL   SE +VE+     PV  +L LH+LVD
Sbjct: 378 EMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEIWLRDEPVCSSLTLHNLVD 437

Query: 74  LWL 77
            W+
Sbjct: 438 WWV 440

BLAST of MELO3C008226 vs. TrEMBL
Match: A0A0A0LIE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G224300 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-26
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 1

Query: 4   LTLIFGSREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVV 63
           L+LI   +EGDVSLPQIPAKYLRIK RNLP+SFVQKYLMRKLD PSESEVEVK MGHPVV
Sbjct: 325 LSLIASDQEGDVSLPQIPAKYLRIKDRNLPVSFVQKYLMRKLDLPSESEVEVKCMGHPVV 384

Query: 64  HTLDLHSLVDLWL 77
            TLDLHSLVDLWL
Sbjct: 385 PTLDLHSLVDLWL 397

BLAST of MELO3C008226 vs. TrEMBL
Match: D7LC67_ARALL (Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_902047 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.4e-19
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1

Query: 10  SREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLH 69
           ++EG+ SLPQIPA YLRIK  N+P+SF+QKYLMRKLD  SE+EVE+K MG PV+ TL LH
Sbjct: 319 NQEGEASLPQIPANYLRIKDGNIPVSFIQKYLMRKLDLKSEAEVEIKCMGEPVIPTLQLH 378

Query: 70  SLVDLWL 77
           SLV+LWL
Sbjct: 379 SLVELWL 385

BLAST of MELO3C008226 vs. TrEMBL
Match: A0A078E9W1_BRANA (BnaC04g41320D protein OS=Brassica napus GN=BnaC04g41320D PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-18
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 1

Query: 10  SREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLH 69
           ++EG+ SLPQIPA YLRI+  N+P+SF+QKYLMRKLD  SE+EVE++ MG PV+ TL LH
Sbjct: 314 NQEGETSLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSETEVEIRCMGEPVIPTLQLH 373

Query: 70  SLVDLWL 77
           SLV+LWL
Sbjct: 374 SLVELWL 380

BLAST of MELO3C008226 vs. TrEMBL
Match: A0A078GWX9_BRANA (BnaA04g17680D protein OS=Brassica napus GN=BnaA04g17680D PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-18
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 1

Query: 10  SREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLH 69
           ++EG+ SLPQIPA YLRI+  N+P+SF+QKYLMRKLD  SE+EVE++ MG PV+ TL LH
Sbjct: 319 NQEGETSLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSETEVEIRCMGEPVIPTLQLH 378

Query: 70  SLVDLWL 77
           SLV+LWL
Sbjct: 379 SLVELWL 385

BLAST of MELO3C008226 vs. TrEMBL
Match: M4DYQ5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-18
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 1

Query: 10  SREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLH 69
           ++EG+ SLPQIPA YLRI+  N+P+SF+QKYLMRKLD  SE+EVE++ MG PV+ TL LH
Sbjct: 250 NQEGETSLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSETEVEIRCMGEPVIPTLQLH 309

Query: 70  SLVDLWL 77
           SLV+LWL
Sbjct: 310 SLVELWL 316

BLAST of MELO3C008226 vs. TAIR10
Match: AT2G30580.1 (AT2G30580.1 DREB2A-interacting protein 2)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-21
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1

Query: 10  SREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLH 69
           ++EG+ SLPQIPA YLRI+  N+P+SF+QKYLMRKLD  SE EVE+  MG PV+ TL LH
Sbjct: 319 NQEGEASLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSEDEVEITCMGEPVIPTLQLH 378

Query: 70  SLVDLWL 77
           SLVDLWL
Sbjct: 379 SLVDLWL 385

BLAST of MELO3C008226 vs. TAIR10
Match: AT1G06770.1 (AT1G06770.1 DREB2A-interacting protein 1)

HSP 1 Score: 87.0 bits (214), Expect = 5.4e-18
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1

Query: 11  REGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLHS 70
           +EG  SLPQIPA +LRI+  N  +SF+QKYLMRKLD  SE+E+E+K MG  V+ TL L++
Sbjct: 321 QEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLESENEIEIKCMGEAVIPTLTLYN 380

Query: 71  LVDLWL 77
           LVDLWL
Sbjct: 381 LVDLWL 386

BLAST of MELO3C008226 vs. TAIR10
Match: AT3G23060.1 (AT3G23060.1 RING/U-box superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-08
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1

Query: 14  DVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDLHSLVD 73
           ++ LP I A  +R+K  N+ +S+++KYLM KL   SE +VE+     PV  +L LH+LVD
Sbjct: 378 EMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEIWLRDEPVCSSLTLHNLVD 437

Query: 74  LWL 77
            W+
Sbjct: 438 WWV 440

BLAST of MELO3C008226 vs. NCBI nr
Match: gi|659081538|ref|XP_008441383.1| (PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MPLLTLIFGSREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGH 60
          MPLLTLIFGSREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGH
Sbjct: 1  MPLLTLIFGSREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGH 60

Query: 61 PVVHTLDLHSLVDLWL 77
          PVVHTLDLHSLVDLWL
Sbjct: 61 PVVHTLDLHSLVDLWL 76

BLAST of MELO3C008226 vs. NCBI nr
Match: gi|449455272|ref|XP_004145377.1| (PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 1

Query: 4   LTLIFGSREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVV 63
           L+LI   +EGDVSLPQIPAKYLRIK RNLP+SFVQKYLMRKLD PSESEVEVK MGHPVV
Sbjct: 325 LSLIASDQEGDVSLPQIPAKYLRIKDRNLPVSFVQKYLMRKLDLPSESEVEVKCMGHPVV 384

Query: 64  HTLDLHSLVDLWL 77
            TLDLHSLVDLWL
Sbjct: 385 PTLDLHSLVDLWL 397

BLAST of MELO3C008226 vs. NCBI nr
Match: gi|659096902|ref|XP_008449348.1| (PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 8.6e-26
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1

Query: 4   LTLIFGSREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVV 63
           L+LI   +EGDVSLPQIPAK+LRIK RNLP+SFVQKYLMRKLD PSESEVEVK MGHPVV
Sbjct: 325 LSLIASDQEGDVSLPQIPAKFLRIKDRNLPVSFVQKYLMRKLDLPSESEVEVKCMGHPVV 384

Query: 64  HTLDLHSLVDLWL 77
            TLDLHSLVDLWL
Sbjct: 385 PTLDLHSLVDLWL 397

BLAST of MELO3C008226 vs. NCBI nr
Match: gi|923648257|ref|XP_013643578.1| (PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Brassica napus])

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-19
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1

Query: 9   GSREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDL 68
           G REG+ SLPQIPA YLRI+  N+P+SF+QKYLMRKLD  SE+EVE++ MG PV+ TL L
Sbjct: 323 GFREGETSLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSETEVEIRCMGEPVIPTLQL 382

Query: 69  HSLVDLWL 77
           HSLV+LWL
Sbjct: 383 HSLVELWL 390

BLAST of MELO3C008226 vs. NCBI nr
Match: gi|685300724|ref|XP_009141080.1| (PREDICTED: E3 ubiquitin protein ligase DRIP2 isoform X1 [Brassica rapa])

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-19
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1

Query: 9   GSREGDVSLPQIPAKYLRIKGRNLPISFVQKYLMRKLDHPSESEVEVKHMGHPVVHTLDL 68
           G REG+ SLPQIPA YLRI+  N+P+SF+QKYLMRKLD  SE+EVE++ MG PV+ TL L
Sbjct: 322 GFREGETSLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSETEVEIRCMGEPVIPTLQL 381

Query: 69  HSLVDLWL 77
           HSLV+LWL
Sbjct: 382 HSLVELWL 389

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DRIP2_ARATH2.4e-2068.66E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1[more]
DRIP1_ARATH9.5e-1762.12E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1 PE=1 SV=2[more]
DRIPH_ARATH3.1e-0742.86Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana GN=At3g23060 ... [more]
Match NameE-valueIdentityDescription
A0A0A0LIE4_CUCSA2.1e-2686.30Uncharacterized protein OS=Cucumis sativus GN=Csa_2G224300 PE=4 SV=1[more]
D7LC67_ARALL5.4e-1970.15Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_902... [more]
A0A078E9W1_BRANA2.7e-1867.16BnaC04g41320D protein OS=Brassica napus GN=BnaC04g41320D PE=4 SV=1[more]
A0A078GWX9_BRANA2.7e-1867.16BnaA04g17680D protein OS=Brassica napus GN=BnaA04g17680D PE=4 SV=1[more]
M4DYQ5_BRARP2.7e-1867.16Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G30580.11.4e-2168.66 DREB2A-interacting protein 2[more]
AT1G06770.15.4e-1862.12 DREB2A-interacting protein 1[more]
AT3G23060.11.7e-0842.86 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659081538|ref|XP_008441383.1|9.2e-36100.00PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis melo][more]
gi|449455272|ref|XP_004145377.1|3.0e-2686.30PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis sativus][more]
gi|659096902|ref|XP_008449348.1|8.6e-2684.93PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis melo][more]
gi|923648257|ref|XP_013643578.1|6.0e-1969.12PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Brassica napus][more]
gi|685300724|ref|XP_009141080.1|6.0e-1969.12PREDICTED: E3 ubiquitin protein ligase DRIP2 isoform X1 [Brassica rapa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051865 protein autoubiquitination
biological_process GO:0009414 response to water deprivation
cellular_component GO:0005575 cellular_component
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008226T1MELO3C008226T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10825RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENTcoord: 10..76
score: 1.3
NoneNo IPR availablePANTHERPTHR10825:SF3POLYCOMB GROUP PROTEIN PSCcoord: 10..76
score: 1.3

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008226Cucumber (Gy14) v2cgybmeB170
MELO3C008226Cucumber (Gy14) v2cgybmeB407
MELO3C008226Silver-seed gourdcarmeB0023
MELO3C008226Silver-seed gourdcarmeB0160
MELO3C008226Silver-seed gourdcarmeB0267
MELO3C008226Silver-seed gourdcarmeB0972
MELO3C008226Cucumber (Chinese Long) v3cucmeB202
MELO3C008226Cucumber (Chinese Long) v3cucmeB476
MELO3C008226Watermelon (97103) v2mewmbB278
MELO3C008226Watermelon (97103) v2mewmbB282
MELO3C008226Wax gourdmewgoB341
MELO3C008226Melon (DHL92) v3.5.1memeB119
MELO3C008226Cucumber (Gy14) v1cgymeB221
MELO3C008226Cucumber (Gy14) v1cgymeB314
MELO3C008226Cucurbita maxima (Rimu)cmameB225
MELO3C008226Cucurbita maxima (Rimu)cmameB267
MELO3C008226Cucurbita maxima (Rimu)cmameB679
MELO3C008226Cucurbita maxima (Rimu)cmameB751
MELO3C008226Cucurbita moschata (Rifu)cmomeB209
MELO3C008226Cucurbita moschata (Rifu)cmomeB258
MELO3C008226Cucurbita moschata (Rifu)cmomeB671
MELO3C008226Cucurbita moschata (Rifu)cmomeB743
MELO3C008226Wild cucumber (PI 183967)cpimeB196
MELO3C008226Wild cucumber (PI 183967)cpimeB465
MELO3C008226Cucumber (Chinese Long) v2cumeB204
MELO3C008226Cucumber (Chinese Long) v2cumeB467
MELO3C008226Watermelon (Charleston Gray)mewcgB267
MELO3C008226Watermelon (Charleston Gray)mewcgB272
MELO3C008226Watermelon (97103) v1mewmB299
MELO3C008226Watermelon (97103) v1mewmB328
MELO3C008226Cucurbita pepo (Zucchini)cpemeB167
MELO3C008226Cucurbita pepo (Zucchini)cpemeB400
MELO3C008226Cucurbita pepo (Zucchini)cpemeB565
MELO3C008226Bottle gourd (USVL1VR-Ls)lsimeB257
MELO3C008226Bottle gourd (USVL1VR-Ls)lsimeB259