MELO3C008205 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008205
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein
Locationchr3 : 1859938 .. 1860174 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTCATTCGCGATGCAATGGAATGTGCGAATGACCAGCTAAGGGCCATTGCGGACTGGTCGAAGTTAGCTATGCAAGATGAAGACACAACCCGGTGGAAAGTCATTAGACAATTGCAGGCTATACCCGAGCTAAGTAGATTGGACAGGGCACGTTGTATGCAGACAATGGCAGGCAAATTGGACGAAATGAAAGCCTTCTTGAACTTACTCGAAGATATGAAGATGGACTAG

mRNA sequence

ATGGAGGTCATTCGCGATGCAATGGAATGTGCGAATGACCAGCTAAGGGCCATTGCGGACTGGTCGAAGTTAGCTATGCAAGATGAAGACACAACCCGGTGGAAAGTCATTAGACAATTGCAGGCTATACCCGAGCTAAGTAGATTGGACAGGGCACGTTGTATGCAGACAATGGCAGGCAAATTGGACGAAATGAAAGCCTTCTTGAACTTACTCGAAGATATGAAGATGGACTAG

Coding sequence (CDS)

ATGGAGGTCATTCGCGATGCAATGGAATGTGCGAATGACCAGCTAAGGGCCATTGCGGACTGGTCGAAGTTAGCTATGCAAGATGAAGACACAACCCGGTGGAAAGTCATTAGACAATTGCAGGCTATACCCGAGCTAAGTAGATTGGACAGGGCACGTTGTATGCAGACAATGGCAGGCAAATTGGACGAAATGAAAGCCTTCTTGAACTTACTCGAAGATATGAAGATGGACTAG

Protein sequence

MEVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAGKLDEMKAFLNLLEDMKMD*
Homology
[Close]
BLAST of MELO3C008205 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-10
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 2   EVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAGK 61
           +++R A+E  N+QL  IA+W  L  QD   TR +++R L+AIPEL+ +DR R M+ +   
Sbjct: 571 DIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRN 630

Query: 62  LDEMKAFLNLLEDMK 77
           +D+MKAFL + + MK
Sbjct: 631 VDDMKAFLEVPDHMK 645

[Close]
BLAST of MELO3C008205 vs. TrEMBL
Match: A0A0A0LEB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-07
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 1  MEVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAG 60
          M++IR+ M+  NDQ  AI +W  +  Q +D    +V++QLQAIPELS  DR   M T+  
Sbjct: 19 MKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIPELSTHDRRCLMWTLMC 78

Query: 61 KLDEMKAFLNLLEDMKMD 79
           + +MKA   +  ++K+D
Sbjct: 79 NVHDMKALWEISNELKLD 96

[Close]
BLAST of MELO3C008205 vs. TrEMBL
Match: E5GBB1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-06
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1 

Query: 1   MEVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAG 60
           +EVI+ AME  NDQL+A  DWSK     E     +V++QLQ IPEL   DRA+ MQ +  
Sbjct: 61  VEVIKSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPELRSRDRAKLMQILFR 120

Query: 61  KLDEMKAF 69
            ++ ++ F
Sbjct: 121 SVEAIEGF 128

[Close]
BLAST of MELO3C008205 vs. TrEMBL
Match: A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-06
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 1   MEVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAG 60
           ++VI + ME  NDQL+AIA+WSK     E     +V++QLQ I EL   DR + MQ +  
Sbjct: 41  VDVISNEMEVRNDQLKAIANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFH 100

Query: 61  KLDEMKAFLNLLEDMKMD 79
            +D+++ FL+    +K++
Sbjct: 101 MVDDIEGFLSCPTKLKLE 118

[Close]
BLAST of MELO3C008205 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 34/75 (45.33%), Postives = 52/75 (69.33%), Query Frame = 1 

Query: 2   EVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAGK 61
           +++R A+E  N+QL  IA+W  L  QD   TR +++RQL+AIPEL+ +DR R M  +   
Sbjct: 423 DIVRIAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMHIIMHN 482

Query: 62  LDEMKAFLNLLEDMK 77
           +D+MKAFL + ++MK
Sbjct: 483 IDDMKAFLEVPDNMK 497

[Close]
BLAST of MELO3C008205 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-10
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 1 

Query: 2   EVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAGK 61
           +++R A+E  N+QL  IA+W  L  QD   TR +V+RQL+AIPEL+ +DR R M+ +   
Sbjct: 165 DILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQLEAIPELTLMDRCRLMRILIHN 224

Query: 62  LDEMKAFLNLLEDMK 77
           +++MKAFL + ++MK
Sbjct: 225 VNDMKAFLEVPDNMK 239

[Close]
BLAST of MELO3C008205 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 72.0 bits (175), Expect = 5.2e-10
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 2   EVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAGK 61
           +++R A+E  N+QL  IA+W  L  QD   TR +++R L+AIPEL+ +DR R M+ +   
Sbjct: 571 DIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRN 630

Query: 62  LDEMKAFLNLLEDMK 77
           +D+MKAFL + + MK
Sbjct: 631 VDDMKAFLEVPDHMK 645

[Close]
BLAST of MELO3C008205 vs. NCBI nr
Match: gi|659093674|ref|XP_008447655.1| (PREDICTED: casein kinase I-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 7.5e-09
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 3  VIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAGKL 62
          +IR+AM+C NDQL+ IA+W + A Q EDT + +VI QLQ+ P+       +CM  +  KL
Sbjct: 9  LIRNAMDCVNDQLKVIANWPERASQKEDTLQREVIMQLQSNPQFCVEGSVKCMMVVTQKL 68

Query: 63 DEMKAFLNLLEDMK 77
            MK FL+L ++MK
Sbjct: 69 LLMKTFLDLPDEMK 82

[Close]
BLAST of MELO3C008205 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-08
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 1   MEVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQTMAG 60
           +EVIR  ME  N+QL+AIADW K     E   R +V++QLQ IP+L   DRA+ MQ +  
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 61  KLDEMKAFLNLLEDMKMD 79
            L+ ++ FL++  ++K++
Sbjct: 279 SLEAIEGFLSIPTELKLE 296

The following BLAST results are available for this feature:
BLAST of MELO3C008205 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME3.6e-1044.00Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LEB9_CUCSA2.9e-0739.74Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1[more]
E5GBB1_CUCME4.1e-0644.12Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KFW0_CUCSA7.1e-0638.46Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1[more]
BLAST of MELO3C008205 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133698|ref|XP_008466863.1|1.8e-1045.33PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|2.3e-1045.33PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|5.2e-1044.00retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659093674|ref|XP_008447655.1|7.5e-0945.95PREDICTED: casein kinase I-like [Cucumis melo][more]
gi|659082641|ref|XP_008441954.1|4.9e-0842.31PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008205T1MELO3C008205T1mRNA