MELO3C008196 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008196
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Chloride channel protein
Location	chr3 : 1784756 .. 1785180 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGGGAAGTGAGGGAGAAATTTACATTGGTGGAATTGGCGGAGAGGGAAGGAAAGATCGAAGAGTTTGTAGTGACGAAAGAGGAAATGGAGATGTACGTTGATCTTCATCCATTGACGAACACTACGTCGTATACAGTAATGGAAAGTATGTCGGTGGCAAAAGCTCTGGTTCTTTTTCGGCAAGTAGGGATTCGTCATTTATTGATCGTCCCCAAATATGAAGCAGCCAGAGTAAGCTCATCATCTTCTTCTTCTTCTTCTTCTTTTACTCACTCCATCAGAATTATTTTAGTTCATGGTTGTTTGTGCAGGTTCTGTTGGTGATTGGGATTTTGACGTGGCAAGATTTAAGGTCATACAATATTTTGAGTGCAATTCCTGATTTAGAAAGGACCAAAGGCAATGAGAAACATAATTGA

mRNA sequence

ATGGAATGGGAAGTGAGGGAGAAATTTACATTGGTGGAATTGGCGGAGAGGGAAGGAAAGATCGAAGAGTTTGTAGTGACGAAAGAGGAAATGGAGATGTACGTTGATCTTCATCCATTGACGAACACTACGTCGTATACAGTAATGGAAAGTATGTCGGTGGCAAAAGCTCTGGTTCTTTTTCGGCAAGTAGGGATTCGTCATTTATTGATCGTCCCCAAATATGAAGCAGCCAGAGTTCTGTTGGTGATTGGGATTTTGACGTGGCAAGATTTAAGGTCATACAATATTTTGAGTGCAATTCCTGATTTAGAAAGGACCAAAGGCAATGAGAAACATAATTGA

Coding sequence (CDS)

ATGGAATGGGAAGTGAGGGAGAAATTTACATTGGTGGAATTGGCGGAGAGGGAAGGAAAGATCGAAGAGTTTGTAGTGACGAAAGAGGAAATGGAGATGTACGTTGATCTTCATCCATTGACGAACACTACGTCGTATACAGTAATGGAAAGTATGTCGGTGGCAAAAGCTCTGGTTCTTTTTCGGCAAGTAGGGATTCGTCATTTATTGATCGTCCCCAAATATGAAGCAGCCAGAGTTCTGTTGGTGATTGGGATTTTGACGTGGCAAGATTTAAGGTCATACAATATTTTGAGTGCAATTCCTGATTTAGAAAGGACCAAAGGCAATGAGAAACATAATTGA

Protein sequence

MEWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLFRQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKHN*

Homology

[Close]

BLAST of MELO3C008196 vs. Swiss-Prot
Match: CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-37
Identity = 78/112 (69.64%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKF   ELAERE   ++  +T  EMEMYVDLHPLTNTT YTVME+MSVAKALVLF
Sbjct: 669 EWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTVMENMSVAKALVLF 728

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKH 114
           RQVG+RHLLIVPK +A+ +  V+GILT QDLR+YNIL A P LE++KG + H
Sbjct: 729 RQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSKGGKTH 780

[Close]

BLAST of MELO3C008196 vs. Swiss-Prot
Match: CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 2.3e-35
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKFT VELAERE   ++  +T  EM++YVDLHPLTNTT YTV++SMSVAKALVLF
Sbjct: 664 EWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLHPLTNTTPYTVVQSMSVAKALVLF 723

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNE 112
           R VG+RHLL+VPK +A+ +  VIGILT QDLR+YNIL A P L++ K  +
Sbjct: 724 RSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPHLDKHKSGK 773

[Close]

BLAST of MELO3C008196 vs. Swiss-Prot
Match: CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=3 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 1


Query: 17  REGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLFRQVGIRHLLIVPKYE 76
           R  KIE+  +++EE+ MY+DLHP +N + YTV+E+MS+AKAL+LFR+VGIRHLL++PK  
Sbjct: 664 RSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVGIRHLLVIPK-- 723

Query: 77  AARVLLVIGILTWQDLRSYNILSAIPDLERTK 109
            +    V+GILT  D    +IL   P + R+K
Sbjct: 724 TSNRPPVVGILTRHDFMPEHILGLHPSVSRSK 753

[Close]

BLAST of MELO3C008196 vs. Swiss-Prot
Match: CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.8e-18
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 20  KIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLFRQVGIRHLLIVPKYEAAR 79
           KIE+  +++EEMEMYVDLHP+TNT+ YTV+E++S+AKA +LFRQ+G+RHL +VPK     
Sbjct: 693 KIEDLDLSEEEMEMYVDLHPITNTSPYTVLETLSLAKAAILFRQLGLRHLCVVPKTPGRP 752

Query: 80  VLLVIGILTWQDLRSYNILSAIPDLERTK 109
              ++GILT  D    ++L   P ++  K
Sbjct: 753 P--IVGILTRHDFMPEHVLGLYPHIDPLK 779

[Close]

BLAST of MELO3C008196 vs. Swiss-Prot
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-10
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 21  IEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLFRQVGIRHLLIVPKYEAARV 80
           IE+  +T +++EMY+DL P  N + Y V E MS+ K   LFRQ+G+RHL +VP     R 
Sbjct: 684 IEDIHLTSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQLGLRHLFVVP-----RP 743

Query: 81  LLVIGILTWQDL 93
             VIG++T +DL
Sbjct: 744 SRVIGLITRKDL 750

[Close]

BLAST of MELO3C008196 vs. TrEMBL
Match: I1Z8C8_CUCSA (Chloride channel protein OS=Cucumis sativus GN=ClCa PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-45
Identity = 98/113 (86.73%), Postives = 101/113 (89.38%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           +WEVREKFT VELAEREGKIEE VVTKEEMEMYVDLHPLTNTT YTV+ESMSVAKALVLF
Sbjct: 677 DWEVREKFTWVELAEREGKIEELVVTKEEMEMYVDLHPLTNTTPYTVLESMSVAKALVLF 736

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKHN 115
           RQVG+RHLLIVPKYEAA V  VIGILT QDLR YNILSA PDL R KGNEK N
Sbjct: 737 RQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPDLARIKGNEKRN 789

[Close]

BLAST of MELO3C008196 vs. TrEMBL
Match: A0A067DK14_CITSI (Chloride channel protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0039662mg PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-41
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKF+ VELAEREGKIEE  VT EEMEMY+DLHPLTNTT YTV+ESMSVAKA+VLF
Sbjct: 484 EWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLF 543

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKH 114
           RQVG+RHLL+VPKYEAA V  V+GILT QDLR++NIL+A P LER+K  +KH
Sbjct: 544 RQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 595

[Close]

BLAST of MELO3C008196 vs. TrEMBL
Match: A0A067DXH7_CITSI (Chloride channel protein OS=Citrus sinensis GN=CISIN_1g0039662mg PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-41
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKF+ VELAEREGKIEE  VT EEMEMY+DLHPLTNTT YTV+ESMSVAKA+VLF
Sbjct: 336 EWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLF 395

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKH 114
           RQVG+RHLL+VPKYEAA V  V+GILT QDLR++NIL+A P LER+K  +KH
Sbjct: 396 RQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 447

[Close]

BLAST of MELO3C008196 vs. TrEMBL
Match: V4W2Z9_9ROSI (Chloride channel protein OS=Citrus clementina GN=CICLE_v10014341mg PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.8e-41
Identity = 86/112 (76.79%), Postives = 98/112 (87.50%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKF+ VELAEREGKIEE  VT  EMEMY+DLHPLTNTT YTV+ESMSVAKA+VLF
Sbjct: 672 EWEVREKFSWVELAEREGKIEEVAVTSAEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLF 731

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKH 114
           RQVG+RHLL+VPKYEAA V  V+GILT QDLR++NIL+A P LER+K  +KH
Sbjct: 732 RQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 783

[Close]

BLAST of MELO3C008196 vs. TrEMBL
Match: V4U882_9ROSI (Chloride channel protein OS=Citrus clementina GN=CICLE_v10014341mg PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.8e-41
Identity = 86/112 (76.79%), Postives = 98/112 (87.50%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKF+ VELAEREGKIEE  VT  EMEMY+DLHPLTNTT YTV+ESMSVAKA+VLF
Sbjct: 494 EWEVREKFSWVELAEREGKIEEVAVTSAEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLF 553

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKH 114
           RQVG+RHLL+VPKYEAA V  V+GILT QDLR++NIL+A P LER+K  +KH
Sbjct: 554 RQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 605

[Close]

BLAST of MELO3C008196 vs. TAIR10
Match: AT3G27170.1 (AT3G27170.1 chloride channel B)

HSP 1 Score: 156.8 bits (395), Expect = 8.2e-39
Identity = 78/112 (69.64%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKF   ELAERE   ++  +T  EMEMYVDLHPLTNTT YTVME+MSVAKALVLF
Sbjct: 669 EWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTVMENMSVAKALVLF 728

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKH 114
           RQVG+RHLLIVPK +A+ +  V+GILT QDLR+YNIL A P LE++KG + H
Sbjct: 729 RQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSKGGKTH 780

[Close]

BLAST of MELO3C008196 vs. TAIR10
Match: AT5G40890.1 (AT5G40890.1 chloride channel A)

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-36
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKFT VELAERE   ++  +T  EM++YVDLHPLTNTT YTV++SMSVAKALVLF
Sbjct: 664 EWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLHPLTNTTPYTVVQSMSVAKALVLF 723

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNE 112
           R VG+RHLL+VPK +A+ +  VIGILT QDLR+YNIL A P L++ K  +
Sbjct: 724 RSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPHLDKHKSGK 773

[Close]

BLAST of MELO3C008196 vs. TAIR10
Match: AT5G33280.1 (AT5G33280.1 Voltage-gated chloride channel family protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-19
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 1


Query: 17  REGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLFRQVGIRHLLIVPKYE 76
           R  KIE+  +++EE+ MY+DLHP +N + YTV+E+MS+AKAL+LFR+VGIRHLL++PK  
Sbjct: 664 RSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVGIRHLLVIPK-- 723

Query: 77  AARVLLVIGILTWQDLRSYNILSAIPDLERTK 109
            +    V+GILT  D    +IL   P + R+K
Sbjct: 724 TSNRPPVVGILTRHDFMPEHILGLHPSVSRSK 753

[Close]

BLAST of MELO3C008196 vs. TAIR10
Match: AT5G49890.1 (AT5G49890.1 chloride channel C)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-19
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 20  KIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLFRQVGIRHLLIVPKYEAAR 79
           KIE+  +++EEMEMYVDLHP+TNT+ YTV+E++S+AKA +LFRQ+G+RHL +VPK     
Sbjct: 693 KIEDLDLSEEEMEMYVDLHPITNTSPYTVLETLSLAKAAILFRQLGLRHLCVVPKTPGRP 752

Query: 80  VLLVIGILTWQDLRSYNILSAIPDLERTK 109
              ++GILT  D    ++L   P ++  K
Sbjct: 753 P--IVGILTRHDFMPEHVLGLYPHIDPLK 779

[Close]

BLAST of MELO3C008196 vs. TAIR10
Match: AT5G26240.1 (AT5G26240.1 chloride channel D)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 21  IEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLFRQVGIRHLLIVPKYEAARV 80
           IE+  +T +++EMY+DL P  N + Y V E MS+ K   LFRQ+G+RHL +VP     R 
Sbjct: 684 IEDIHLTSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQLGLRHLFVVP-----RP 743

Query: 81  LLVIGILTWQDL 93
             VIG++T +DL
Sbjct: 744 SRVIGLITRKDL 750

[Close]

BLAST of MELO3C008196 vs. NCBI nr
Match: gi|659082036|ref|XP_008441632.1| (PREDICTED: chloride channel protein CLC-b-like [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-53
Identity = 110/113 (97.35%), Postives = 110/113 (97.35%), Query Frame = 1


Query: 1   MEWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVL 60
           MEWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVL
Sbjct: 1   MEWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVL 60

Query: 61  FRQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKH 114
           FRQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTK  E H
Sbjct: 61  FRQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKAYESH 113

[Close]

BLAST of MELO3C008196 vs. NCBI nr
Match: gi|659081469|ref|XP_008441347.1| (PREDICTED: chloride channel protein CLC-b-like [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-46
Identity = 101/113 (89.38%), Postives = 102/113 (90.27%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKFT VELAEREGKIEE VVTKEEMEMYVDLHPLTNTT YTVMESMSVAKALVLF
Sbjct: 677 EWEVREKFTWVELAEREGKIEELVVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLF 736

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKHN 115
           RQVG+RHLLIVPKYEAA V  VIGILT QDLR YNILSA PDL RTKGNEK N
Sbjct: 737 RQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPDLARTKGNEKRN 789

[Close]

BLAST of MELO3C008196 vs. NCBI nr
Match: gi|525507272|ref|NP_001267676.1| (chloride channel protein CLC-b-like [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-45
Identity = 98/113 (86.73%), Postives = 101/113 (89.38%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           +WEVREKFT VELAEREGKIEE VVTKEEMEMYVDLHPLTNTT YTV+ESMSVAKALVLF
Sbjct: 677 DWEVREKFTWVELAEREGKIEELVVTKEEMEMYVDLHPLTNTTPYTVLESMSVAKALVLF 736

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKHN 115
           RQVG+RHLLIVPKYEAA V  VIGILT QDLR YNILSA PDL R KGNEK N
Sbjct: 737 RQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPDLARIKGNEKRN 789

[Close]

BLAST of MELO3C008196 vs. NCBI nr
Match: gi|641823955|gb|KDO43321.1| (hypothetical protein CISIN_1g0039662mg [Citrus sinensis])

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-41
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKF+ VELAEREGKIEE  VT EEMEMY+DLHPLTNTT YTV+ESMSVAKA+VLF
Sbjct: 336 EWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLF 395

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKH 114
           RQVG+RHLL+VPKYEAA V  V+GILT QDLR++NIL+A P LER+K  +KH
Sbjct: 396 RQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 447

[Close]

BLAST of MELO3C008196 vs. NCBI nr
Match: gi|641823951|gb|KDO43317.1| (hypothetical protein CISIN_1g0039662mg, partial [Citrus sinensis])

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-41
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 2   EWEVREKFTLVELAEREGKIEEFVVTKEEMEMYVDLHPLTNTTSYTVMESMSVAKALVLF 61
           EWEVREKF+ VELAEREGKIEE  VT EEMEMY+DLHPLTNTT YTV+ESMSVAKA+VLF
Sbjct: 484 EWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLF 543

Query: 62  RQVGIRHLLIVPKYEAARVLLVIGILTWQDLRSYNILSAIPDLERTKGNEKH 114
           RQVG+RHLL+VPKYEAA V  V+GILT QDLR++NIL+A P LER+K  +KH
Sbjct: 544 RQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 595

The following BLAST results are available for this feature:

BLAST of MELO3C008196 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLCB_ARATH	1.5e-37	69.64	Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1	[more]
CLCA_ARATH	2.3e-35	66.36	Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2	[more]
CLCG_ARATH	3.4e-18	50.00	Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 ...	[more]
CLCC_ARATH	5.8e-18	49.44	Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1	[more]
CLCD_ARATH	4.4e-10	45.83	Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2	[more]

BLAST of MELO3C008196 vs. TrEMBL


Match Name	E-value	Identity	Description
I1Z8C8_CUCSA	1.7e-45	86.73	Chloride channel protein OS=Cucumis sativus GN=ClCa PE=2 SV=1	[more]
A0A067DK14_CITSI	1.2e-41	77.68	Chloride channel protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0039662mg PE=3...	[more]
A0A067DXH7_CITSI	1.2e-41	77.68	Chloride channel protein OS=Citrus sinensis GN=CISIN_1g0039662mg PE=3 SV=1	[more]
V4W2Z9_9ROSI	5.8e-41	76.79	Chloride channel protein OS=Citrus clementina GN=CICLE_v10014341mg PE=3 SV=1	[more]
V4U882_9ROSI	5.8e-41	76.79	Chloride channel protein OS=Citrus clementina GN=CICLE_v10014341mg PE=3 SV=1	[more]

BLAST of MELO3C008196 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27170.1	8.2e-39	69.64	chloride channel B	[more]
AT5G40890.1	1.3e-36	66.36	chloride channel A	[more]
AT5G33280.1	1.9e-19	50.00	Voltage-gated chloride channel family protein	[more]
AT5G49890.1	3.3e-19	49.44	chloride channel C	[more]
AT5G26240.1	2.5e-11	45.83	chloride channel D	[more]

BLAST of MELO3C008196 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082036\|ref\|XP_008441632.1\|	2.5e-53	97.35	PREDICTED: chloride channel protein CLC-b-like [Cucumis melo]	[more]
gi\|659081469\|ref\|XP_008441347.1\|	1.0e-46	89.38	PREDICTED: chloride channel protein CLC-b-like [Cucumis melo]	[more]
gi\|525507272\|ref\|NP_001267676.1\|	2.5e-45	86.73	chloride channel protein CLC-b-like [Cucumis sativus]	[more]
gi\|641823955\|gb\|KDO43321.1\|	1.7e-41	77.68	hypothetical protein CISIN_1g0039662mg [Citrus sinensis]	[more]
gi\|641823951\|gb\|KDO43317.1\|	1.7e-41	77.68	hypothetical protein CISIN_1g0039662mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000644	CBS_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006821	chloride transport
biological_process	GO:1903959	regulation of anion transmembrane transport
biological_process	GO:1902476	chloride transmembrane transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005247	voltage-gated chloride channel activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU57735	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008196T1	MELO3C008196T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU57735	MU57735	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000644	CBS domain	PROFILE	PS51371	CBS	coord: 41..104 score:
None	No IPR available	PANTHER	PTHR11689	CHLORIDE CHANNEL	coord: 2..114 score: 6.4
None	No IPR available	PANTHER	PTHR11689:SF67	CHLORIDE CHANNEL PROTEIN CLC-A-RELATED	coord: 2..114 score: 6.4
None	No IPR available	unknown	SSF54631	CBS-domain pair	coord: 24..94 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008196	Cla006510	Watermelon (97103) v1	mewmB328
MELO3C008196	ClCG11G007060	Watermelon (Charleston Gray)	mewcgB272
MELO3C008196	Cla97C11G213990	Watermelon (97103) v2	mewmbB282
MELO3C008196	Bhi04G001982	Wax gourd	mewgoB341
MELO3C008196	CSPI02G25660	Wild cucumber (PI 183967)	cpimeB116
MELO3C008196	Cucsa.087700	Cucumber (Gy14) v1	cgymeB100
MELO3C008196	CmaCh15G000800	Cucurbita maxima (Rimu)	cmameB267
MELO3C008196	CmaCh04G029600	Cucurbita maxima (Rimu)	cmameB677
MELO3C008196	CmoCh04G030810	Cucurbita moschata (Rifu)	cmomeB669
MELO3C008196	CmoCh15G000810	Cucurbita moschata (Rifu)	cmomeB258
MELO3C008196	Cp4.1LG13g11250	Cucurbita pepo (Zucchini)	cpemeB167
MELO3C008196	CsGy2G025290	Cucumber (Gy14) v2	cgybmeB099
MELO3C008196	Carg06034	Silver-seed gourd	carmeB0023
MELO3C008196	Carg24276	Silver-seed gourd	carmeB0983

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008196	Cucurbita maxima (Rimu)	cmameB679
MELO3C008196	Cucurbita moschata (Rifu)	cmomeB671
MELO3C008196	Cucumber (Chinese Long) v2	cumeB115
MELO3C008196	Cucurbita pepo (Zucchini)	cpemeB398
MELO3C008196	Cucurbita pepo (Zucchini)	cpemeB400
MELO3C008196	Bottle gourd (USVL1VR-Ls)	lsimeB259
MELO3C008196	Silver-seed gourd	carmeB0022
MELO3C008196	Cucumber (Chinese Long) v3	cucmeB121