MELO3C008179 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008179
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein of unknown function (DUF 3339)
Location	chr3 : 1582924 .. 1583416 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCTTCCATTGCTTTTTGAAGTTCGTCGTCTCTGTGTTTGTTGCTGAGAGCGATATCAGAGGTATCTGAGAGAAGAGAATAATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTCCTGTTAACTCCCGGTTTGTTGGTTCAGATGCCCGGGAAGAGCCGGTTTGTTGAATTTGGGAATTTCCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTACATGGGCTCCTAATTTCACTTCTTTAATTTCTGCAGTAATGTTCTTTGCCTTTAATCATCTAATCCTGTTTAATTTTGTCTTTAAATTAATTAAACTTGTTTTCTATCCCATTTTTTTCCTTCACTATCCAATCCAATCTCCTTTGATTTGTTAAATAAAGTATGTGTGTTTGTCATCTTTGAATATCAGGAATTGGTATAGCATCATTCT

mRNA sequence

GAGCTTCCATTGCTTTTTGAAGTTCGTCGTCTCTGTGTTTGTTGCTGAGAGCGATATCAGAGGTATCTGAGAGAAGAGAATAATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTCCTGTTAACTCCCGGTTTGTTGGTTCAGATGCCCGGGAAGAGCCGGTTTGTTGAATTTGGGAATTTCCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTACATGGGCTCCTAATTTCACTTCTTTAATTTCTGCAGTAATGTTCTTTGCCTTTAATCATCTAATCCTGTTTAATTTTGTCTTTAAATTAATTAAACTTGTTTTCTATCCCATTTTTTTCCTTCACTATCCAATCCAATCTCCTTTGATTTGTTAAATAAAGTATGTGTGTTTGTCATCTTTGAATATCAGGAATTGGTATAGCATCATTCT

Coding sequence (CDS)

ATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTCCTGTTAACTCCCGGTTTGTTGGTTCAGATGCCCGGGAAGAGCCGGTTTGTTGAATTTGGGAATTTCCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTACATGGGCTCCTAA

Protein sequence

MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLLAVRVHVYMGS*

Homology

[Close]

BLAST of MELO3C008179 vs. TrEMBL
Match: A0A061EEJ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-27
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PGKSRF+EFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

[Close]

BLAST of MELO3C008179 vs. TrEMBL
Match: A0A059APQ4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01640 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.5e-27
Identity = 58/70 (82.86%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVA++LFVLLTPGLL+Q+PGK RF+EFGNFQTSG S+LVHSILYFAL+CIFLL
Sbjct: 1  MSDWGPVFVAMVLFVLLTPGLLIQIPGKHRFIEFGNFQTSGASVLVHSILYFALVCIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VHVY+GS
Sbjct: 61 AVGVHVYIGS 70

[Close]

BLAST of MELO3C008179 vs. TrEMBL
Match: W9SAM3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010783 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.5e-27
Identity = 57/70 (81.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PGKSR +E+GNFQTSGVSILVHS+LYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGKSRMIEYGNFQTSGVSILVHSVLYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYLGS 70

[Close]

BLAST of MELO3C008179 vs. TrEMBL
Match: M5XAW7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026813mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.5e-27
Identity = 57/67 (85.07%), Postives = 66/67 (98.51%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AV+LF+LLTPGLL+QMPGKSRFVEFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVVLFILLTPGLLIQMPGKSRFVEFGNFQTSGISILVHSIIYFALICIFLL 60

Query: 61 AVRVHVY 68
          A+ VH+Y
Sbjct: 61 AIGVHMY 67

[Close]

BLAST of MELO3C008179 vs. TrEMBL
Match: M5XAW7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026813mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-16
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1   MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
           MADWGP+ + V+LF+LL PGLL  +PG SR VEFG+ +T+G +I VH++++FAL  I +L
Sbjct: 71  MADWGPILIGVVLFILLQPGLLFSLPGNSRQVEFGSMKTNGKAIAVHTLIFFALYAILIL 130

Query: 61  AVRVHVYMG 70
           AV VH+Y G
Sbjct: 131 AVHVHIYTG 139

HSP 2 Score: 127.1 bits (318), Expect = 8.5e-27
Identity = 58/69 (84.06%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PG+ RF+EFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGRHRFIEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMG 70
          AV VH+Y+G
Sbjct: 61 AVGVHMYLG 69

[Close]

BLAST of MELO3C008179 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-26
Identity = 46/69 (66.67%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPV V V+LFV+LTPGLL Q+PG+ ++VEFGNFQTS VS++VHS+LYF+L+C+FLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AVRVHVYMG 70
          A+++H+Y+G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of MELO3C008179 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 107.1 bits (266), Expect = 4.6e-24
Identity = 45/66 (68.18%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M DWGPVFVAV LFVLLTPGLL+Q+PG+ R VEFG FQTSG+S++VH+++YF L+CI LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AVRVHV 67
          A+++H+
Sbjct: 61 ALQIHI 66

HSP 2 Score: 84.7 bits (208), Expect = 2.5e-17
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1   MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
           MADW PV V V+LFV+L+PGLL  +PG +R V+FG  +T+G +I VH++++FA+  I +L
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133

Query: 61  AVRVHVYMG 70
           A+ +H+Y G
Sbjct: 134 ALNLHIYTG 142

[Close]

BLAST of MELO3C008179 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-23
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV VAV+LFVLLTPGLL Q+P + R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AVRVHVYMGS 71
          A+R+H+Y G+
Sbjct: 61 AIRLHIYTGT 70

[Close]

BLAST of MELO3C008179 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-22
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV +AV+LFV+L+PGLL Q+P   R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AVRVHVYMG 70
          A+ VH+Y G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of MELO3C008179 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-20
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 2  ADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLLA 61
          ADWGPV VAV LF+LL+PGLL Q+P ++R +EFGN  TSG+SILVH+I+YF ++ I ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 VRVHVY 68
          +++H++
Sbjct: 63 IQIHIH 68

[Close]

BLAST of MELO3C008179 vs. NCBI nr
Match: gi|659081418|ref|XP_008441325.1| (PREDICTED: uncharacterized protein LOC103485474 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AVRVHVYMGS
Sbjct: 61 AVRVHVYMGS 70

[Close]

BLAST of MELO3C008179 vs. NCBI nr
Match: gi|658012060|ref|XP_008341292.1| (PREDICTED: uncharacterized protein LOC103404182 [Malus domestica])

HSP 1 Score: 131.7 bits (330), Expect = 5.0e-28
Identity = 60/70 (85.71%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AV+LF+LLTPGLL+QMPGKSRFVEFGNFQTSGVSILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVVLFILLTPGLLIQMPGKSRFVEFGNFQTSGVSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of MELO3C008179 vs. NCBI nr
Match: gi|645250211|ref|XP_008231104.1| (PREDICTED: uncharacterized protein LOC103330325 [Prunus mume])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+QMPGK RFVEFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQMPGKGRFVEFGNFQTSGISILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of MELO3C008179 vs. NCBI nr
Match: gi|657974552|ref|XP_008379108.1| (PREDICTED: uncharacterized protein LOC103442131 [Malus domestica])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AV+LFVLLTPGLL+QMPGKSRFV FGNFQTSGVSILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVLLFVLLTPGLLIQMPGKSRFVXFGNFQTSGVSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of MELO3C008179 vs. NCBI nr
Match: gi|590647455|ref|XP_007031906.1| (Uncharacterized protein TCM_017235 [Theobroma cacao])

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PGKSRF+EFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

The following BLAST results are available for this feature:

BLAST of MELO3C008179 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EEJ7_THECC	1.7e-27	84.29	Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1	[more]
A0A059APQ4_EUCGR	6.5e-27	82.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01640 PE=4 SV=1	[more]
W9SAM3_9ROSA	6.5e-27	81.43	Uncharacterized protein OS=Morus notabilis GN=L484_010783 PE=4 SV=1	[more]
M5XAW7_PRUPE	8.5e-27	85.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026813mg PE=4 SV=1	[more]
M5XAW7_PRUPE	4.0e-16	56.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026813mg PE=4 SV=1	[more]

BLAST of MELO3C008179 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08391.1	2.9e-26	66.67	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	4.6e-24	68.18	unknown protein	[more]
AT3G48660.1	1.0e-23	68.57	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	4.3e-22	65.22	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	3.1e-20	57.58	Protein of unknown function (DUF 3339)	[more]

BLAST of MELO3C008179 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081418\|ref\|XP_008441325.1\|	3.7e-31	100.00	PREDICTED: uncharacterized protein LOC103485474 [Cucumis melo]	[more]
gi\|658012060\|ref\|XP_008341292.1\|	5.0e-28	85.71	PREDICTED: uncharacterized protein LOC103404182 [Malus domestica]	[more]
gi\|645250211\|ref\|XP_008231104.1\|	1.4e-27	84.29	PREDICTED: uncharacterized protein LOC103330325 [Prunus mume]	[more]
gi\|657974552\|ref\|XP_008379108.1\|	1.4e-27	85.71	PREDICTED: uncharacterized protein LOC103442131 [Malus domestica]	[more]
gi\|590647455\|ref\|XP_007031906.1\|	2.5e-27	84.29	Uncharacterized protein TCM_017235 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU64839	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008179T1	MELO3C008179T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU64839	MU64839	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 score: 1.5
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 1.0
None	No IPR available	PANTHER	PTHR33128:SF14	SUBFAMILY NOT NAMED	coord: 1..69 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008179	Bhi04G001993	Wax gourd	mewgoB341
MELO3C008179	CmoCh15G000740	Cucurbita moschata (Rifu)	cmomeB258
MELO3C008179	Cp4.1LG13g11200	Cucurbita pepo (Zucchini)	cpemeB167

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008179	Cucumber (Chinese Long) v3	cucmeB121
MELO3C008179	Watermelon (97103) v2	mewmbB285
MELO3C008179	Cucumber (Gy14) v1	cgymeB100
MELO3C008179	Cucurbita maxima (Rimu)	cmameB267
MELO3C008179	Cucurbita maxima (Rimu)	cmameB679
MELO3C008179	Cucurbita moschata (Rifu)	cmomeB671
MELO3C008179	Wild cucumber (PI 183967)	cpimeB116
MELO3C008179	Cucumber (Chinese Long) v2	cumeB115
MELO3C008179	Watermelon (Charleston Gray)	mewcgB270
MELO3C008179	Watermelon (97103) v1	mewmB330
MELO3C008179	Cucurbita pepo (Zucchini)	cpemeB400
MELO3C008179	Bottle gourd (USVL1VR-Ls)	lsimeB259
MELO3C008179	Cucumber (Gy14) v2	cgybmeB099
MELO3C008179	Silver-seed gourd	carmeB0023
MELO3C008179	Silver-seed gourd	carmeB0983