MELO3C008131 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008131
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase II
Location	chr3 : 822050 .. 823141 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATCGGAAATTCTGCAACTGCGCTATCTGTGAGAATTCAAATCAAGCTTCCATTTGCACCGGTTGCGTCAATCTCAGGTATCCAGCTTCTTCAACACTCTGATTAACTTCCCTGCTTCATTCGGAGTAGATGCTTGTTGAATTCTACTCATCTTTTTCGTTTCAATTTTCCGGCAGATTGAATGACTACAATGCTTCGTTGAAATCATTGAGAGCTCGGCGAGATATCTTGTATTCGAGGTTGAGTGATGTGCTTGTGGCAAAGGTTTGGTGGTGTTCATCATTCATTGTCGCTCTCTTTAATTTTCTCCATGTTTGAGGTTTAACTGTCGTCAATGTTTCTTTCTGAAATTCCTCCACCAAATTCCCGGGAAAAGAATCTTGGTAGAGTTGCTTGCTAGAAGTTGCTGACGATGCTGCTATTTTTTTAATAATTCTTTTGTTATTTCATCAATTATTAAATAGCATTCGATCTTATGATTTTACTTCGGCTTCGTGTAGTTCCATTCCTTTACTGCTGGTTATTATATAGGGAATAGTATTATTTATCCACGCAATGTACTTGTGGAGCAAAGTGCCTTGGTCCAGAAATTTTAATTTGTTTGATTGTTGCTTCTCAGGGGAAGGCAGACGACCAATTAAACTGGAGAGTGACAAGGAATGAGAAACTTACGAGGTTAAGGGAGAAACTCAGACGCAGTAGAGAGCAACTCGAGCAAGGTTTTTGAACCTTCAATAGAACATTTGAAAGCAATGTATTTTCTTAGACGTTTGCTAAATTATGTTATGTATAAGTGCTTATCAAATTTAAAAAATTATTTTATTCGATCAGGAAAGGCAGAGATTGAGATGAAATCCTTTGATCTCCAATTGAAATATGCAATGCTTGAATCAGCCCGTTCAGTGGTACTCCATTTATTTATTTTCAATTTATACTAGTTGTATTACCTTTCCTCCTCTCTATTTAAACATCCCATGAGAATGGTCGTTTGTGGATTTTTTGATGCAGTTGGAAAAACAACGAGTCGAACAACTGGAGAAGGCATATCCTGACCTTATTAGCACCAAGAATCTGGGACATGTATGA

mRNA sequence

ATGATGAATCGGAAATTCTGCAACTGCGCTATCTGTGAGAATTCAAATCAAGCTTCCATTTGCACCGGTTGCGTCAATCTCAGATTGAATGACTACAATGCTTCGTTGAAATCATTGAGAGCTCGGCGAGATATCTTGTATTCGAGGTTGAGTGATGTGCTTGTGGCAAAGGGGAAGGCAGACGACCAATTAAACTGGAGAGTGACAAGGAATGAGAAACTTACGAGGTTAAGGGAGAAACTCAGACGCAGTAGAGAGCAACTCGAGCAAGGAAAGGCAGAGATTGAGATGAAATCCTTTGATCTCCAATTGAAATATGCAATGCTTGAATCAGCCCGTTCAGTGTTGGAAAAACAACGAGTCGAACAACTGGAGAAGGCATATCCTGACCTTATTAGCACCAAGAATCTGGGACATGTATGA

Coding sequence (CDS)

ATGATGAATCGGAAATTCTGCAACTGCGCTATCTGTGAGAATTCAAATCAAGCTTCCATTTGCACCGGTTGCGTCAATCTCAGATTGAATGACTACAATGCTTCGTTGAAATCATTGAGAGCTCGGCGAGATATCTTGTATTCGAGGTTGAGTGATGTGCTTGTGGCAAAGGGGAAGGCAGACGACCAATTAAACTGGAGAGTGACAAGGAATGAGAAACTTACGAGGTTAAGGGAGAAACTCAGACGCAGTAGAGAGCAACTCGAGCAAGGAAAGGCAGAGATTGAGATGAAATCCTTTGATCTCCAATTGAAATATGCAATGCTTGAATCAGCCCGTTCAGTGTTGGAAAAACAACGAGTCGAACAACTGGAGAAGGCATATCCTGACCTTATTAGCACCAAGAATCTGGGACATGTATGA

Protein sequence

MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKADDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQRVEQLEKAYPDLISTKNLGHV*

Homology

[Close]

BLAST of MELO3C008131 vs. TrEMBL
Match: A0A0A0LQP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G403670 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 4.3e-70
Identity = 135/140 (96.43%), Postives = 139/140 (99.29%), Query Frame = 1


Query: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA 60
           MMNRKFCNCAICENSNQASICTGCVNLRLNDYN+SLKSLRARRD+LYSRLSDVLVAKGKA
Sbjct: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNSSLKSLRARRDVLYSRLSDVLVAKGKA 60

Query: 61  DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120
           DDQLNWRVTRNEKLT LREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR
Sbjct: 61  DDQLNWRVTRNEKLTSLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120

Query: 121 VEQLEKAYPDLISTKNLGHV 141
           +EQLEKAYPDLISTKNLGH+
Sbjct: 121 LEQLEKAYPDLISTKNLGHM 140

[Close]

BLAST of MELO3C008131 vs. TrEMBL
Match: A0A067GM93_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011723mg PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 96/139 (69.06%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 2   MNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKAD 61
           MN+K  NCAICENSN+ASIC  CVN RL++ N  LKSL++RRD LY RLS+VLVAKGKAD
Sbjct: 1   MNKKASNCAICENSNRASICAACVNYRLSECNTLLKSLKSRRDALYMRLSEVLVAKGKAD 60

Query: 62  DQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQRV 121
           DQLNWRV +NEKLT LREKLRRS+EQL QGK +IE  S+DL+++YA+L+SARS++EK R 
Sbjct: 61  DQLNWRVLQNEKLTNLREKLRRSKEQLSQGKLKIEKSSYDLKVRYAILDSARSMMEKNRA 120

Query: 122 EQLEKAYPDLISTKNLGHV 141
           EQLEK YP++I T++LGH+
Sbjct: 121 EQLEKFYPNIICTQSLGHM 139

[Close]

BLAST of MELO3C008131 vs. TrEMBL
Match: A0A067GZU0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011723mg PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 96/139 (69.06%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 2   MNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKAD 61
           MN+K  NCAICENSN+ASIC  CVN RL++ N  LKSL++RRD LY RLS+VLVAKGKAD
Sbjct: 1   MNKKASNCAICENSNRASICAACVNYRLSECNTLLKSLKSRRDALYMRLSEVLVAKGKAD 60

Query: 62  DQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQRV 121
           DQLNWRV +NEKLT LREKLRRS+EQL QGK +IE  S+DL+++YA+L+SARS++EK R 
Sbjct: 61  DQLNWRVLQNEKLTNLREKLRRSKEQLSQGKLKIEKSSYDLKVRYAILDSARSMMEKNRA 120

Query: 122 EQLEKAYPDLISTKNLGHV 141
           EQLEK YP++I T++LGH+
Sbjct: 121 EQLEKFYPNIICTQSLGHM 139

[Close]

BLAST of MELO3C008131 vs. TrEMBL
Match: A0A067GZG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011723mg PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 96/139 (69.06%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 2   MNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKAD 61
           MN+K  NCAICENSN+ASIC  CVN RL++ N  LKSL++RRD LY RLS+VLVAKGKAD
Sbjct: 1   MNKKASNCAICENSNRASICAACVNYRLSECNTLLKSLKSRRDALYMRLSEVLVAKGKAD 60

Query: 62  DQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQRV 121
           DQLNWRV +NEKLT LREKLRRS+EQL QGK +IE  S+DL+++YA+L+SARS++EK R 
Sbjct: 61  DQLNWRVLQNEKLTNLREKLRRSKEQLSQGKLKIEKSSYDLKVRYAILDSARSMMEKNRA 120

Query: 122 EQLEKAYPDLISTKNLGHV 141
           EQLEK YP++I T++LGH+
Sbjct: 121 EQLEKFYPNIICTQSLGHM 139

[Close]

BLAST of MELO3C008131 vs. TrEMBL
Match: A0A067GM98_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011723mg PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 96/139 (69.06%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 2   MNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKAD 61
           MN+K  NCAICENSN+ASIC  CVN RL++ N  LKSL++RRD LY RLS+VLVAKGKAD
Sbjct: 1   MNKKASNCAICENSNRASICAACVNYRLSECNTLLKSLKSRRDALYMRLSEVLVAKGKAD 60

Query: 62  DQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQRV 121
           DQLNWRV +NEKLT LREKLRRS+EQL QGK +IE  S+DL+++YA+L+SARS++EK R 
Sbjct: 61  DQLNWRVLQNEKLTNLREKLRRSKEQLSQGKLKIEKSSYDLKVRYAILDSARSMMEKNRA 120

Query: 122 EQLEKAYPDLISTKNLGHV 141
           EQLEK YP++I T++LGH+
Sbjct: 121 EQLEKFYPNIICTQSLGHM 139

[Close]

BLAST of MELO3C008131 vs. TAIR10
Match: AT4G08540.1 (AT4G08540.1 DNA-directed RNA polymerase II protein)

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-41
Identity = 77/139 (55.40%), Postives = 108/139 (77.70%), Query Frame = 1


Query: 2   MNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKAD 61
           M ++  NCAIC+N+N+  ICT CVN RL +YN  LKSL+ RRD L SR +++L +KGKAD
Sbjct: 1   MTKRSSNCAICDNTNRPCICTACVNHRLIEYNTLLKSLKTRRDSLLSRFNELLESKGKAD 60

Query: 62  DQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQRV 121
           DQ NWR+ +NEK+++L++KL+ ++E + QGK +IE  S DL++KY +L+SARS LEK RV
Sbjct: 61  DQKNWRLIQNEKISKLKKKLKSNKELVTQGKVKIERGSSDLKVKYGVLDSARSTLEKTRV 120

Query: 122 EQLEKAYPDLISTKNLGHV 141
           EQ+EK +P+LI T++LGH+
Sbjct: 121 EQVEKYFPNLICTQSLGHM 139

[Close]

BLAST of MELO3C008131 vs. TAIR10
Match: AT1G77890.1 (AT1G77890.1 DNA-directed RNA polymerase II protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-24
Identity = 58/136 (42.65%), Postives = 78/136 (57.35%), Query Frame = 1


Query: 5   KFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKADDQL 64
           K   CA+C  S + SIC  CVN  LN+Y   L SL++ R++ Y RLS +LV K KA  Q 
Sbjct: 3   KSTKCAVCYKSFRPSICVDCVNRGLNEYKVKLDSLKSLREVSYFRLSGLLVTKEKAISQR 62

Query: 65  NWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQRVEQL 124
            W+  +NEKL +LREKL+   E+L+Q K      S +L+ +Y ++ES    LE+ RV QL
Sbjct: 63  CWKELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERYGIIESTNVALEESRVHQL 122

Query: 125 EKAYPDLISTKNLGHV 141
           E  Y D I    L ++
Sbjct: 123 ENHYSDTIGNHYLVYI 138

[Close]

BLAST of MELO3C008131 vs. NCBI nr
Match: gi|659081262|ref|XP_008441239.1| (PREDICTED: uncharacterized protein DDB_G0271670 isoform X1 [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 1.9e-71
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA 60
           MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA
Sbjct: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA 60

Query: 61  DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120
           DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR
Sbjct: 61  DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120

Query: 121 VEQLEKAYPDLISTKNLGHV 141
           VEQLEKAYPDLISTKNLGH+
Sbjct: 121 VEQLEKAYPDLISTKNLGHM 140

[Close]

BLAST of MELO3C008131 vs. NCBI nr
Match: gi|659081264|ref|XP_008441240.1| (PREDICTED: uncharacterized protein DDB_G0271670 isoform X2 [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 1.9e-71
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA 60
           MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA
Sbjct: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA 60

Query: 61  DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120
           DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR
Sbjct: 61  DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120

Query: 121 VEQLEKAYPDLISTKNLGHV 141
           VEQLEKAYPDLISTKNLGH+
Sbjct: 121 VEQLEKAYPDLISTKNLGHM 140

[Close]

BLAST of MELO3C008131 vs. NCBI nr
Match: gi|778673030|ref|XP_004138644.2| (PREDICTED: uncharacterized protein LOC101217421 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 6.1e-70
Identity = 135/140 (96.43%), Postives = 139/140 (99.29%), Query Frame = 1


Query: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA 60
           MMNRKFCNCAICENSNQASICTGCVNLRLNDYN+SLKSLRARRD+LYSRLSDVLVAKGKA
Sbjct: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNSSLKSLRARRDVLYSRLSDVLVAKGKA 60

Query: 61  DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120
           DDQLNWRVTRNEKLT LREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR
Sbjct: 61  DDQLNWRVTRNEKLTSLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120

Query: 121 VEQLEKAYPDLISTKNLGHV 141
           +EQLEKAYPDLISTKNLGH+
Sbjct: 121 LEQLEKAYPDLISTKNLGHM 140

[Close]

BLAST of MELO3C008131 vs. NCBI nr
Match: gi|470129520|ref|XP_004300664.1| (PREDICTED: uncharacterized protein LOC101292418 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 205.3 bits (521), Expect = 7.0e-50
Identity = 100/140 (71.43%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA 60
           M N+K  NCAICENSN ASIC  CVN RLNDYN SLK+L++RRD+LYSRLSD LVAKGKA
Sbjct: 1   MTNKKSSNCAICENSNLASICAVCVNYRLNDYNNSLKALKSRRDLLYSRLSDALVAKGKA 60

Query: 61  DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120
           DDQLNWR+ ++EKL RLREKLRR++EQL QGKA+IE  S+DL++KY +LESA S+LEK R
Sbjct: 61  DDQLNWRILQDEKLVRLREKLRRNKEQLVQGKAKIEKTSYDLKVKYGVLESALSMLEKNR 120

Query: 121 VEQLEKAYPDLISTKNLGHV 141
            EQLEK YP+LI T++LGH+
Sbjct: 121 AEQLEKFYPNLICTQSLGHM 140

[Close]

BLAST of MELO3C008131 vs. NCBI nr
Match: gi|764593992|ref|XP_011465537.1| (PREDICTED: uncharacterized protein LOC101292418 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 205.3 bits (521), Expect = 7.0e-50
Identity = 100/140 (71.43%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MMNRKFCNCAICENSNQASICTGCVNLRLNDYNASLKSLRARRDILYSRLSDVLVAKGKA 60
           M N+K  NCAICENSN ASIC  CVN RLNDYN SLK+L++RRD+LYSRLSD LVAKGKA
Sbjct: 1   MTNKKSSNCAICENSNLASICAVCVNYRLNDYNNSLKALKSRRDLLYSRLSDALVAKGKA 60

Query: 61  DDQLNWRVTRNEKLTRLREKLRRSREQLEQGKAEIEMKSFDLQLKYAMLESARSVLEKQR 120
           DDQLNWR+ ++EKL RLREKLRR++EQL QGKA+IE  S+DL++KY +LESA S+LEK R
Sbjct: 61  DDQLNWRILQDEKLVRLREKLRRNKEQLVQGKAKIEKTSYDLKVKYGVLESALSMLEKNR 120

Query: 121 VEQLEKAYPDLISTKNLGHV 141
            EQLEK YP+LI T++LGH+
Sbjct: 121 AEQLEKFYPNLICTQSLGHM 140

The following BLAST results are available for this feature:

BLAST of MELO3C008131 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQP7_CUCSA	4.3e-70	96.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G403670 PE=4 SV=1	[more]
A0A067GM93_CITSI	1.2e-48	69.06	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011723mg PE=4 SV=1	[more]
A0A067GZU0_CITSI	1.2e-48	69.06	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011723mg PE=4 SV=1	[more]
A0A067GZG4_CITSI	1.2e-48	69.06	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011723mg PE=4 SV=1	[more]
A0A067GM98_CITSI	1.2e-48	69.06	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011723mg PE=4 SV=1	[more]

BLAST of MELO3C008131 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G08540.1	2.8e-41	55.40	DNA-directed RNA polymerase II protein	[more]
AT1G77890.1	2.4e-24	42.65	DNA-directed RNA polymerase II protein	[more]

BLAST of MELO3C008131 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081262\|ref\|XP_008441239.1\|	1.9e-71	99.29	PREDICTED: uncharacterized protein DDB_G0271670 isoform X1 [Cucumis melo]	[more]
gi\|659081264\|ref\|XP_008441240.1\|	1.9e-71	99.29	PREDICTED: uncharacterized protein DDB_G0271670 isoform X2 [Cucumis melo]	[more]
gi\|778673030\|ref\|XP_004138644.2\|	6.1e-70	96.43	PREDICTED: uncharacterized protein LOC101217421 [Cucumis sativus]	[more]
gi\|470129520\|ref\|XP_004300664.1\|	7.0e-50	71.43	PREDICTED: uncharacterized protein LOC101292418 isoform X1 [Fragaria vesca subsp...	[more]
gi\|764593992\|ref\|XP_011465537.1\|	7.0e-50	71.43	PREDICTED: uncharacterized protein LOC101292418 isoform X2 [Fragaria vesca subsp...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018791	UV_resistance/autophagy_Atg14

Vocabulary: **Biological Process**
Term	Definition
GO:0010508	positive regulation of autophagy

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010508	positive regulation of autophagy
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU51931	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008131T1	MELO3C008131T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU51931	MU51931	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018791	UV radiation resistance protein/autophagy-related protein 14	PFAM	PF10186	Atg14	coord: 9..139 score: 3.1
None	No IPR available	unknown	Coil	Coil	coord: 71..98 scor
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 3..140 score: 3.4
None	No IPR available	PANTHER	PTHR21297:SF1	DNA-DIRECTED RNA POLYMERASE II PROTEIN	coord: 3..140 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008131	Wild cucumber (PI 183967)	cpimeB116
MELO3C008131	Cucumber (Chinese Long) v2	cumeB115
MELO3C008131	Watermelon (Charleston Gray)	mewcgB273
MELO3C008131	Watermelon (97103) v1	mewmB332
MELO3C008131	Cucurbita pepo (Zucchini)	cpemeB167
MELO3C008131	Cucurbita pepo (Zucchini)	cpemeB400
MELO3C008131	Bottle gourd (USVL1VR-Ls)	lsimeB259
MELO3C008131	Cucumber (Gy14) v2	cgybmeB099
MELO3C008131	Silver-seed gourd	carmeB0023
MELO3C008131	Silver-seed gourd	carmeB1051
MELO3C008131	Cucumber (Chinese Long) v3	cucmeB121
MELO3C008131	Watermelon (97103) v2	mewmbB279
MELO3C008131	Wax gourd	mewgoB341
MELO3C008131	Cucumber (Gy14) v1	cgymeB100
MELO3C008131	Cucurbita maxima (Rimu)	cmameB267
MELO3C008131	Cucurbita maxima (Rimu)	cmameB679
MELO3C008131	Cucurbita moschata (Rifu)	cmomeB258
MELO3C008131	Cucurbita moschata (Rifu)	cmomeB671