MELO3C008110 (gene) Melon (DHL92) v3.5.1

NameMELO3C008110
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr3 : 670788 .. 670988 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATCCCAGTGGTTATTGAGGAAAGTCCAAAAGAGCTAGTTTCGGAGGTAGTTCAGTATGTCTTAGATGAATACCAAGACGTAATGGCAGAGACTCTACCTCCACCCAGGGGGATAGATCATGAGATAGAACTTCTACCCAGGGCGAGACCCCCTGCAAAGAATGTGTATCACATGGGGCCGCCAGAATGGGCATAA

mRNA sequence

ATGGCTATCCCAGTGGTTATTGAGGAAAGTCCAAAAGAGCTAGTTTCGGAGGTAGTTCAGTATGTCTTAGATGAATACCAAGACGTAATGGCAGAGACTCTACCTCCACCCAGGGGGATAGATCATGAGATAGAACTTCTACCCAGGGCGAGACCCCCTGCAAAGAATGTGTATCACATGGGGCCGCCAGAATGGGCATAA

Coding sequence (CDS)

ATGGCTATCCCAGTGGTTATTGAGGAAAGTCCAAAAGAGCTAGTTTCGGAGGTAGTTCAGTATGTCTTAGATGAATACCAAGACGTAATGGCAGAGACTCTACCTCCACCCAGGGGGATAGATCATGAGATAGAACTTCTACCCAGGGCGAGACCCCCTGCAAAGAATGTGTATCACATGGGGCCGCCAGAATGGGCATAA

Protein sequence

MAIPVVIEESPKELVSEVVQYVLDEYQDVMAETLPPPRGIDHEIELLPRARPPAKNVYHMGPPEWA*
BLAST of MELO3C008110 vs. TrEMBL
Match: A0A061F392_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024329 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-06
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1

Query: 1   MAIPVVIEESPKELVSEVVQYVLDEYQDVMAE----TLPPPRGIDHEIELLPRARPPAKN 60
           +A+ +   E+ +  + + V+ VL+++Q++M E     LPP + + HEIELLPR +PPAK 
Sbjct: 272 VAMSIYKGENNRNPIHQEVKLVLEKFQNMMPEQLPRVLPPQQAVHHEIELLPRVKPPAKG 331

Query: 61  VYHMGPPE 65
            Y M PP+
Sbjct: 332 PYRMAPPK 339

BLAST of MELO3C008110 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-08
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1

Query: 1   MAIPVVIEESPKELVSEVVQYVLDEYQDVMAET----LPPPRGIDHEIELLPRARPPAKN 60
           MAIP+   E+  E V   +  VL++Y+DVM ++    LPP R IDHEIEL+P  +P AKN
Sbjct: 67  MAIPLNSSENSGETVPTEIVRVLEKYRDVMPDSFPKSLPPRRMIDHEIELVPGTKPRAKN 126

Query: 61  VYHMGPPEWA 67
            Y M PPE A
Sbjct: 127 AYRMAPPELA 136

BLAST of MELO3C008110 vs. NCBI nr
Match: gi|802621793|ref|XP_012076137.1| (PREDICTED: uncharacterized protein LOC105637312 [Jatropha curcas])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 1

Query: 10  SPKELVSEVVQYVLDEYQDVMA----ETLPPPRGIDHEIELLPRARPPAKNVYHMGPPE 65
           +PK+ + E VQ VLDEY+DVM     + LPP R IDH+IEL P A+PPA   Y M PPE
Sbjct: 486 NPKQSLPECVQTVLDEYKDVMPPQLPKKLPPRREIDHQIELEPGAKPPAMAPYRMSPPE 544

BLAST of MELO3C008110 vs. NCBI nr
Match: gi|802760765|ref|XP_012089545.1| (PREDICTED: uncharacterized protein LOC105647934, partial [Jatropha curcas])

HSP 1 Score: 61.2 bits (147), Expect = 7.8e-07
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1

Query: 10  SPKELVSEVVQYVLDEYQDVMA----ETLPPPRGIDHEIELLPRARPPAKNVYHMGPPE 65
           +P++ + E VQ VL+EY+DVM     + LPP R IDH+IEL P A+PPA   Y M PPE
Sbjct: 383 NPRQSLPECVQAVLEEYKDVMPPELPKKLPPRREIDHQIELEPGAKPPAMAPYRMSPPE 441

BLAST of MELO3C008110 vs. NCBI nr
Match: gi|698456954|ref|XP_009780734.1| (PREDICTED: uncharacterized protein LOC104229738 [Nicotiana sylvestris])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1

Query: 2   AIPVVIEESPKELVSEVVQYVLDEYQDVMAETL----PPPRGIDHEIELLPRARPPAKNV 61
           A+  + E+   E +   VQ VL+E +DVM E L    PP R +DH+IEL+P  +PPA  +
Sbjct: 341 AVTEIEEDKVDEALPPCVQQVLNENKDVMPEDLLKRLPPRREVDHQIELIPGTKPPAMGL 400

Query: 62  YHMGPPE 65
           Y M PPE
Sbjct: 401 YRMAPPE 407

BLAST of MELO3C008110 vs. NCBI nr
Match: gi|729320756|ref|XP_010533333.1| (PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1

Query: 8   EESPKELVSEVVQYVLDEYQDVMAETLP----PPRGIDHEIELLPRARPPAKNVYHMGPP 67
           E S +  +   V+ VLD + DVM E LP    P RGIDH+IEL+P  +PPA   Y M PP
Sbjct: 601 ESSDQPPIPSEVRVVLDSFADVMPEELPKKLPPRRGIDHQIELIPGTKPPAMAPYRMAPP 660

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A061F392_THECC6.0e-0639.71Uncharacterized protein OS=Theobroma cacao GN=TCM_024329 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659114583|ref|XP_008457127.1|4.1e-0850.00PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me... [more]
gi|802621793|ref|XP_012076137.1|1.2e-0755.93PREDICTED: uncharacterized protein LOC105637312 [Jatropha curcas][more]
gi|802760765|ref|XP_012089545.1|7.8e-0752.54PREDICTED: uncharacterized protein LOC105647934, partial [Jatropha curcas][more]
gi|698456954|ref|XP_009780734.1|2.3e-0644.78PREDICTED: uncharacterized protein LOC104229738 [Nicotiana sylvestris][more]
gi|729320756|ref|XP_010533333.1|2.3e-0649.21PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008110T1MELO3C008110T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None