MELO3C008106 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008106
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription initiation factor IIA subunit 2
Locationchr3 : 611823 .. 622431 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTTTGTTTTAAGAGAAAAAGAAAGAGAAGGGAAGAAAGCCCTAACAATATTCGTTCTCCCTCTCTTTTTCGTGGAACAGCCCCCACTTGAACTTTCAGCCGCCCAAGAAATCCTCTCTCCGACAACCATTAGCAGCGACTACCAGTGACTGAGCGACACTAGAACCACCATCCAGCATCCCATTTCTGTCTTCATCAACCACGCCAGACTCCGAGTTCCAGCGACGGCGGCGCTTACATCCTTCGGTGGCGGTTACCATCGACACCCTGGAAACCCACGCGGTCTGAACACCCTGGAACCGACGTTTTCCTCCCTTTCGGCAAGGTTAGACACTTACCCATTGTTTCAATGTTGGATTTAAGTCACCCACTCCTTAAGGGATCGTTATATATAGGATCGAGCATATTCGAACACCAACAAACAAGGATTTGGGTTGTTTTGAGTAAGAATCAGCGGGTAAACAGTCTAAATTTATTTTCTAACTAGTTTAAGATGCTCTAGACTAGTCTCTAATACTTGGAAGTCCTTTTGTAGGTTTGAAATAGTTTAGGAACTATTATATCACCTTGCAGCAAGGACTCAATTATGTTGTCTTGTTGATTTTTAGTTGTTAGAACCCCGTTTAGAGCCTTTTCAATTGAATTTGTGTAGATGTTTGAATATACGTATGATTAATGTTAGAGAACATAACACATAAGCATAAAACATATTGTAGAGTTTACAATGGAAAGTATTAGAATTCTTGAGAATGTCGATGGCCCTTCGTGGAGTCAGTCAGTTGGGCTGACGTTGACTGAGAGATCAGTGATCTTGGATTATATCAGTTGGACCGGAAAAGAGGTCAGTGGACTTGGATATATCAGTTAGGGGCAATGGAGATCGTTGGTAGCCTCGGATGAAGTCAACAAGGTTGACGGAGTGTGTTGATGATAGTGGATAAAGTCATGTCGATGCACCTGGTCTCAATTAGTTGAGGTCAACGTGTTTGAGGTATTCATTCAGAATTTTTTGTGAGTGTTAAGCTGGAATGTTTACTGAATTTGATTAGTTTGATTTAAAACTACGTATGATATGGTAATCTAATTCATGAGGTTAGCATCATGTGATTGACATTTAAAGTTGTATGTATGTTGTTTGGTGACTGTTCAGCTGTGGGCTAGGGCTACTTACCAGTACAAGTGTCAAGTGTGTATCAACCCCCCACAACATTTTTTAGGTGTTGACGGCTGTTGCGACCTTGGTTATAGCAAAAAGGGAATATAGGAAAGATTGACTATTGGGCACATGCCATTGTCGTGGTCTATTTTCTTTAAAAGATCATTTCATTCCAACATTTGATTATTGAAACTTTGTTTCAGAGTCAAGTAGGTTTTTTCCGTTGGCTTTGAGTCGAGGATTGTAATTGACTTGTTTGGGTTATGTTGTTTGAGTTTGACATTAGTTTTGTTTTGTTTTGTTGAATTTGACTAAATTGATGCTTTGCATATCAATTTAGCATCAATTTAAAAAAAAAAAATTTTTTCATTGAATTTTAAATTGTTTAATAGTTGTTTTAAAGTTGGTAGCATATATATTTACATCGTTACATCACTGAAAGCTTTCTAATGTACCAGAGATAGTAGAGTTAGTTACATGTCGAATATTGGTAACGTTCTCTTGGTTGGAGTTGAAATTTGGGGTCGTTAGAAGTTTCCTTTATTATTATTATTTTATCCTTTTTTAAATTGATCTCTCACTTTATTGCCATATATTTTGCTAGCTTACTCGAATTCCGATGCTATGTTCCAAAATTTTATCATTTTTTTTTTTTTTTTTTTTTTTCAATTGTGGATTGTGTACTTTTCAACTAAAGATGTAGAGGATTGCATAAACAAGTTGAAGGAAGGTATTATCCTCAAGCTGGATTTCAAGAAGGCTTATGATCTCGTCGATTGAGACTTTTTGGATAAGTTGTTGGATGAGTAAGGTTTTGGGTATAAATGGAGAATGTGGTTTGGGGTTGCGTTAGGAAAGTGAACTATTCCATCCTCATTAATGGTACCCCTAAGGGATCTATTTAGGCTTTTAGAGGCTTAAGGCAAGGAGATCATCTATGTCCCTTCTTGTTCGTAATTGTGGTGGATGTTTTAAGTTGTCTCATTTCTAAAGGAGTGGAGGGAAATATTATTGAGCCTTTTTGGGTTGGTTCCGAAAAGGTTGCTTTGTCTCCTTATTTAAGCTTCTAGCTCTATCTGCAAAAGTATCGAGAAGCTTATGAGAGAATTTCTTTGGGAAGGAATGGATGAGGGGAAGAGATCTTATCTGGTTAGTTGGCAGGTAAATGGGTGCCCCGTGAAAGAGGGAGGGTTTGAAATTGGTTACTTAAGGATGTGTAACAAAGCCTTGTTGGCTAAATGGCTTTGGCGTTTTGTCCTTGACCCCAAATCTTTGTGGCATAGGATCATTGTGAGCAAGTATGGCTTTGATCCCTTTCAATGGGTGGCTAAAGGGATTATAGGCGCACATTGTACTCCGTGGAAGGACATCTCGCTTGAGGTCCTTTCTTTCTATGCTTGGACTAGATGCATTGTGGGAGATGGTAAGGAGACCATTTTTCTTTTTGGAAGATCAGTGGGTTGGGGATAGCCCCCCTTCTCCATCTATCCTCATCTTTATCATCTGTCATTTCTTAAAAATCATGCAATCTCTATCTTTTTATTTTGGGTGGGAAGTTCAGTGTCTTTTTCTATCAAATTCCGTTGTCACTTATCCAATAGGGAATCGACGGAAGTGGCCTCCTTTCTTTGCTCGATGAGTGCAACTTTAGGGAGGAAAGGAGGGATGTTTGTGTTTGGAAACCTAATCCTTCGAAGGCTTCTCTTGTAAATCTTTCTTCAAATTGTTGTTAGACCCTCCCATGGTTGTGTGTTGGTTTTTGGCAAGGTTTGGAGGATAAATCTAGTTCTTTATCTAGTAGGTTTTGTTAGGTTGCGTGAGTACCTTGGATGGGCTTGCTAAGAAGATGCCTACGCTTATGGGACCACCCTGTTGTATTCTTTGTCGGAAGGAGGAGGAAAACCTGAACCACCTGCTTTGGGACTGTCACTACGTGAGGTTTGTGTGGTCTTGTTCTTTCAGAAGTTTGGTTTTCAGAGTGCTGGTCAGAGAAAGATCCGTGCCATGATTGAGGAGTTTATCTTGTATCGTCCGCCATTCAGAGAGAAAGGCTGGTTTTTGTTGCTTGCCACGGTGTACGCCATAGTTTGGGGTATTTGAGGTGAAAGGAACAAGAGAGTTTTTAGAGGTTTAGAGGACCCTTCTAATGTTTGGTCCTTAGTTAAGTTCCATATTTCTCTTTGGGCTTCTGTTTGAAGGTTCTTTTTTGTAATTATTCCATTGGTGGAATTTTATTGAGTTGGAAGTATTTCTTGTAGAAAGCTTGTTTTTTGGTGGGCTTGGTTTTTTGTCGGGCATTCTTTTCATTTCTTTTTCAATGAAAGTTGACTATTTTTATTAAAAAAAAAGTAAAACTAGATTTTCTATCTTAGCTAAAGAGCTTCAATATTTTGCAGATCTTGATTTCCGAGAAGAATGGCAACATTTGAACTCTACCGCAGATCAACGATTGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCCATTCAGGTTCTTGTCCAGTTCGATAAGGTATAGCCAAAGCTGTTAGGAGATGTGGTATATTTTTCTATTTGTGTTTAGAATTTAGGTCTTGTTTAATTTAATTTAATTTGTTACTGCTTTTGCAGTCGATGACCGATGCTTTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGTATCTTTTTTTGGCTTAAGAATTTGACAATCTTTAACGCTATAAATTTATGTTGCTAAATAAAGTCAACGTTATAAATTTGAACATATTTTTACTGATCAGAGGAATCGGTTGTGTTTGCCTTGTTTGTAGATTGCTCTGTTTGTGCTCTATTGCATGTCTAGACTTGATCCAGATAATTTTGTCAATAACACATTACATATTTGTACGTCGAATGTATATCTTAGGAACCAAGGTAGTATGGTATAACTTCGTTTCACATTGGTGAGAATGAATGGGATGATCAATGTGGTACTTAAGTGGCTTGGCTCTCCCTCTCCAATAGCTGACTTTTTGTGTGTTGTTCCTCAAGGTGCTTAAGTACCTAACAATGGTATCACAGCTAGTTGTCAACGTTTTGGAGTAGAGTCGGTTGAGGGTTTTGATCGAGTGTGGCTGAGTGAAGTACTATCGGAGTAGCCGCTTGGACGTCGGCTTTTCGGCGATGGGGTATTGTTAGGAACCAATATAGTGTGGGATGTCGGTGACCAATGTGATACTCTAGTGGCTTGACTCTTCCACCCAATAGTTGACTTTTGGGATGTGGTTCTCCAATGTCCTTAAGTACCTAACAGTATAGTGGATATTCTCCCGGTTCTTTTGGTTGCCATGTAGTGACTAGAACCGTGATATAGGAATGAAACAGTGTACAGTATAAAACCATTTGTATTGAGAGATGGTAGTGTTTCTTTAGTGGAGCTTTTGATTTCTATGCGATTTGGTTGGTTTTGTGATAGACCCCTATCATTAAACAACACAGTAGAAGAGTGAAGAAAGCCAATAACTGAAAATAGTCTGTTAATGAGTCGGTTAGAAAAGTTTGTTATGAAAGTAGCATAAATAGCACAGTACCCTGAAGAGTGATTCTTGAAAGATAGAATAACAGGAAGAGTGTTTTGTAATTCGTGGAGGAGTATTACAATCAACAAAAGAATTTTTACTTGATATACATATTCGGGTCCCATCATATTGGTATCAGAGCAGAGCAAGAAAAAAAATGGCAAAGAAGGCTAAAGAGAGATTTGACGCTGTCGAACAAAAGATTATCAACATTCAAGCAGAGTTGAAATGCCTATGTTCAACGGTGAGGATTCTGACACTTGGCTATTTCGTGTAGACAGATATTTTAATATTCACAAATTGACAGATTCCAAAAAGATGACCGTAGCAACAATCAGTTTCGAAGGGCCAACCCTGAATTGGTATAGAGTGCAGAAGAGCAAGAGAAGTTCATGAATTGGTTGAATTTAAAAGAGCAATTACTCGTATGATTTCGATCGGTGAGAGAAGGATCCATTTGCTGTCAGTTCCTAAGAATTCGGCAAGAATCAAGCGTGGAGGAATATCGAAACCAATTTGATAAATTGATGGCACCATTATCAAATCTACAGGATCGAGTGATTGAAGAAACGTTCATGAATGGGCTACTATCATGGATTAAAGCCGAGGTTAAATTTTGTCGACCAAGCCGAAATGATGTTGTTGGTGATGTATAATTAAAATTTACCTTCAACCACCAGCTTAAGCTTTTGGGTGAATTGGCAGTTTAATAGATGCAATTGGCTCAACTCGCAAAAAATCGGGAAATAATCTGAAACGAGGCCAACCTTAAAAGCTATATTGGAGGTAAGTACTCTGCTTCCTCTTCATCTGCTACTAAATCCAGTAATACTTCAGGCGATAAAGGAAATGCCATATTTCCAATAAGGATAATTACTTTAAGAGCAAATCCAACCGGAGAAATAAAGAAAGAAGGTCCATCAAAGAGATTGAGCAATGCAGAATTTCAAGCCAGGAAAGAGAAAGGCCTTTGTTTTCGCTACAATGAGAGATATTCTCATGACCACAAGTGTAAAGCCAGGGAACAAAGAAAATTGAGAATGTACATAGTGAAGAATGATGATGAAGAATTCGAAATTATAGAAGATACCAATTACGAAGAAAAAGAGTTGAAAATGGTAAGAATAGTAGAGGAAGACCAAACTGTAATTCAATTCAGCTGTGGGCCTTTCCAATCTGGACACCATGAAAGTAAGGGGAAAAATCAAGAAAAAAAATGTAGTAGTATTGATAGACTGTGGAGCCACCCACAATTTTATCTCAGAGAAGTTAACCAATGAATTACAATTGATCACAAAGGATACTTCCCACTATGGAGTAATCCTAGGATTTGGTGCAGCAATAAAAGGCAAGGGAATATGTGAATCAATGGAAATAATAATGAGTGAATGGAAGGTAGTAGCCGATTTATTACCATTGGAGCTAGGGGGAGTAGATGTGGAGTTAGGGATGCAATGGCTATACTCCCTAGGAAATGCAGAAGTTGACCGGCGAAACTTGACCACGACCTTCTTACACCAAGGAAGGAAAATAGTCATTAAAGGAGATCCTAGTCTAAACAAAGCAAGCGTAAGCCTGAAGAACATGATAAAATCATGGGAAGATTCTAACCAAGGATTTTTGGTAGAATGCCGATCCATGGAAGGAAATGACTACATCCTCGGAAGAGAGTGAAAATGAAATAGAAGGTTAACAACCGAAGAATTAGTGAGAGTAGTGCTGAAAAGATATGAAGATGTGTTTACATGGCCAGAAGAGCTTCCTCCACAAAGAAACATAGAACATCACATCCACCTCAAACAGGGTACCAACCCAATAAACGTCAGACCATATCGTTATGCCTATCAACAGAAAGCAGAAATGGAGAAACTTGTAGATGAGATGCTGAAATCAGGAATCATTCGCCCTAGTAATAACCCCTACTCCAGCCTAGTCCTATTAGTAAGAAAGAAATATGGGAGTTGGCCCTTCTGTGTAGATTATCGAGCACTGAATAATGCAACCATACTCGATAAATTCCCAATACCAGTGATCGAAGAGCTATTTGACGAATTAAATGGAGCAACCTGATTCTCCAAAATTGACCTAAAAGCAGGATACACTAGATTCAGATGTGCGAAGATGATAATGAGAAAACGGCATTCCCAGCCCATGAAGGTCACTATGAATTCATGGCTATGCCCTTCAGCTTAACCAATGCACCGTCAACATTTCAGTCCTTAATGAATTTAATCTTCAGGCCCATATCTAAGGAAGTTTATGCTGGTATTCTTCGATGATATACTAATCTACAGCAAAGACATAGAAGCTCATCTACAACACTTGGGGCTAGCATTAGAAGTATTAAGAAAGAATGAGTTATATGCAAATCAGAAAAAATGCAGCTTTGCCAAAACAAGGGTTGATTACTTGGGAGTAGAAGTTGACCCTGAAAAAAATTAAGCAATCAAATAATGGCCAGTACCACAGAATGTGCGAGAAGTTCGAGGTTTTCTAGGCCTAACCGGATATTACAGAAAATTTGTTCAACATTATGGCTCAATAGCAGCTCAATTAACACAACTATTGAAGCTTGGAGGATTTAAATGGAATGAGGAAGCCTATGAAGCATTCCAAAAGCTGCAGAATGCCATGATGACACTTCCGGTACTAGCTCTACCAGATTTTAATGCTACCTTTGAAATATAGACAGATGCATCTGGCTAAGGAATAGGTGCAGTGCTGACTCAATCTAAACGCCCCATTGCTTACTTCAGTCACACATTGGCTGTGAGAGATAGAGCCAAACTGGTATACGAAAGGGAACTTATGGTTGTTGTCCTAGCTGTCCAAAGATGGAGATCCTATTTGCTTGCTAGAAAATTTGTAGTCAAAACCGATCAAAGATCGCTAAAGTTCCTGCTAGAACAAAGGGTGATCCAACCTCAATACCAAAAGTGGATAGTCAAGCTCTTAGGCTACTCATTTGAGGTAATATATAAACCTGGAGTAGAAAATAAAGCAGCAGGTGTGCTCTCAAGGATGCCCCTACAGTGCACTTATGCAACTTGACAGCACCTACATTGATTGATCTACTCACAGTCAAAGAAGAGGTGGAAAAAGATGACCATCTACAGAAAATAATGACACAACTTAAGAAGGAAGAAGGAAGCAAGGAAAGTAAGTTCTCCATCCAACAAGAGATGCTGAGATATAAAGACAGGTTGGTCATCTCTAAAGCATCAAAACTGATCCCAACTATACTACACACCTACCATGATTCAGTATTCGGGGGCACTTAGGTTCTTAAAAACCTATAAAAGGTTAGCTGGAGAATTATATAGGGAAGGCATGAAACAAGACGTAAAAAAGTACTGTGAGCAGTGCTTAACCTGTCAGAAAAATAAATCCTTAGCCCTATCTCCTGCAGGTCCTTTGACACCATTGGGGAATACCAAACAGTGTGTGGAGTGATATCTCTATGGACTTCATTGAAGGTCTACCTAAATCCAATGGGTTTGAAGTAATTCTGGTGGTAGTAGATCAGTTCAGTAAGTATGGGAATTTTTTACATTGAAACACCCTTACACTGCCAAAATTGTGGCTGATATCTTCATCAAAGAAGTTGTTAGATTACATGGATACCCTAAATCTATAGTCTCAGATAGAGACAAAGTCTTCCTAAGCAACTTCTGGAAAGAGCTCTTCAAAATGGCAGGAACAAAACTGAACCGAAGCAGATCATACCACCCTCAATCTGACGGGCAAATCGAAGTAGTTAACAGAGGAGTGGAGACATAGCCTTAGGGGCATTAAAAGAAAATCTCAGAATCGCTGATCCTGAAAAGAAGTGCAGATCAAAAAAGAAGAGAAGTAGAATATGCAGTTGGAGATATGGTCTTCTTAAAAATAAAACCCTACAGACAAGTCTCACTAAAGAAGAGAAGGAATTAAAAGCTCTCTCCAAAACTTTTTGGACCCTACAAAATCCTAGAAAGGATTGGTCAAGTGGCATACAGGAAAAAGCATCCATCCATCCCGTGTTCCATATTTCGCAGCTGAAAAAAAATGATGGGGGAACACCAAGCTGAACCAGCAGAATTACCCTACATACTGAGAACCATTAATAGCGTGCAGAACCAGAAGAAGCTTATGGATATCTCAAGAACAAAATTGCCAGATGGGATGTTTTAATCAAGTGGAAAGGACTATCAAGAAATGAAGCAACATGGGAAGATTATGATGAGATCCAGCAGCAATTCCCTAAGTTTCACCTTGAGGACAAGGTGAATTTGGAGAAGGGGTGTAATGATAGACCCCCTATCATTAAACAATACAACAGAAGAGTGAAGAAAGCCAATAACTGAAAATAGTCTGTTAATGAGTTTGTAGAAAATTCGTAGTTAGGAAAGTAGCATAAATAGCACAGTTTGAGAGAGATATTCCTTGTTCATTCTTGAAAGATAGAATAACAGGAAGAGTGTTCTATAATTCGTGGAGGAGTATTACTATCAATAAAAGAATTCTTACTTGATATATATATTCGGGTCCCATCATTTTGTTAATTCTATTCCTTGCTTCGTTGTTTCTTAATTTTAGAAACGTTTTCCCTATGAAATATTGCTCCTTGGATAAGTGATGAAACACCACTTTTTGTTATGAATTCCCTCTTCTATTTAGATTCTGATAAGGGGTACATTCTGGAACTGAGTTTTTTTTTGGTTTTTTTTAACTCAATTCCTTTCTCTCTCTACTGCCTTTCTCTCTTTCAGGAAATTACAGTAAATCTTCTTACAAAATTCTCGTCTCCTTCCTCCTGAATTCTATTAGTATTTATACTAATCTTGCCAGCCTCTAACTAACTCACATGTGAGTGTTATTACAACTAATATAACAAACTAATGTAACAAACTCCAGCTGGTATGACTAACTTTTCCTTCTGCTGTAAACAAATCTAATTGGGGGTCTATCAATAAGTTTCTCTGGAATATACTTTGTAGTTCTTTGTGTTTTGGGAATCTGGGGACAAAGTCATCCCTGTCGTTAGGGAGGTGGCCATATCAGATTCTACGAGTCTTCGGAGTCCACTACCATTGCTTTCAAGTTCTATGTTCAATCCTATGGATGTTGGATTTTCTAACGATACTCAGTTGAACGTTTATCACACACACACATTGTACGAAGGCCATTGCTCTAAAAGAAATTATGAAATCATAATCACACAACAATGGTTATTAGGAGTTGTATAGTTAACATGTGTGACATTTTGTTTATGTCTCAAACACTTTCTTTCTGGTGATTTCTTAATTTCTTTGTCCTCGTACTGTCTTGTCATGCAACAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCCTCATTTAAAAATGAGGATTCCAGTGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAAGCTCTCATACATCAGTTCTATTCAATGAAATTTGCATAGTTATTTGCTGATGATGGAGCGAATTCAGTCACGGTGAGGAGGAAATGACCATCCAGGAAGTGTTTCAAACGTGATTCTGTAAAGTCATCAACCTGAACGGCAAAAAGTTGCATTGACGATACATAGACTGAAATTGGCTTCTAAAGTTGATTACATAACAATTACGCGATCCTTCTTCTAGTTAACGATAATAAAACATGATATATGTTTCCATATTATGCTATTAATTTCTTGTTGTACTAGTTCCTTTGAACCTACTTTCTGTACATTAGAATTCAAATTACCACTTCGAAAGGAATAAACTTGATTGGAACTACTTATTAGTCGTTATTTCAGTATCATTGATGTTAGGTTCGGGAGCAAACATTATTGGATAAT

mRNA sequence

GAATTTTGTTTTAAGAGAAAAAGAAAGAGAAGGGAAGAAAGCCCTAACAATATTCGTTCTCCCTCTCTTTTTCGTGGAACAGCCCCCACTTGAACTTTCAGCCGCCCAAGAAATCCTCTCTCCGACAACCATTAGCAGCGACTACCAGTGACTGAGCGACACTAGAACCACCATCCAGCATCCCATTTCTGTCTTCATCAACCACGCCAGACTCCGAGTTCCAGCGACGGCGGCGCTTACATCCTTCGGTGGCGGTTACCATCGACACCCTGGAAACCCACGCGGTCTGAACACCCTGGAACCGACGTTTTCCTCCCTTTCGGCAAGATCTTGATTTCCGAGAAGAATGGCAACATTTGAACTCTACCGCAGATCAACGATTGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCCATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACCGATGCTTTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCCTCATTTAAAAATGAGGATTCCAGTGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAAGCTCTCATACATCAGTTCTATTCAATGAAATTTGCATAGTTATTTGCTGATGATGGAGCGAATTCAGTCACGGTGAGGAGGAAATGACCATCCAGGAAGTGTTTCAAACGTGATTCTGTAAAGTCATCAACCTGAACGGCAAAAAGTTGCATTGACGATACATAGACTGAAATTGGCTTCTAAAGTTGATTACATAACAATTACGCGATCCTTCTTCTAGTTAACGATAATAAAACATGATATATGTTTCCATATTATGCTATTAATTTCTTGTTGTACTAGTTCCTTTGAACCTACTTTCTGTACATTAGAATTCAAATTACCACTTCGAAAGGAATAAACTTGATTGGAACTACTTATTAGTCGTTATTTCAGTATCATTGATGTTAGGTTCGGGAGCAAACATTATTGGATAAT

Coding sequence (CDS)

ATGGCAACATTTGAACTCTACCGCAGATCAACGATTGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCCATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACCGATGCTTTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCCTCATTTAAAAATGAGGATTCCAGTGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ*
Homology
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BLAST of MELO3C008106 vs. Swiss-Prot
Match: T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-48
Identity = 93/106 (87.74%), Postives = 101/106 (95.28%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106 vs. Swiss-Prot
Match: T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-48
Identity = 93/106 (87.74%), Postives = 101/106 (95.28%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

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BLAST of MELO3C008106 vs. Swiss-Prot
Match: T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 3.8e-48
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMT+ALESQVK+KV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

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BLAST of MELO3C008106 vs. Swiss-Prot
Match: T2AG_SCHPO (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=toa2 PE=3 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-27
Identity = 53/99 (53.54%), Postives = 78/99 (78.79%), Query Frame = 1 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMT+AL  +V+S++T KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSK 103
            TYRFCD VWTFI+++ SF+ ++ + T  +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

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BLAST of MELO3C008106 vs. Swiss-Prot
Match: T2AG_ONCMY (Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.5e-25
Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 1 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHL 63
           ++LYR +T+G  L E+LDE++Q   ++P+LA+QVL+QFDK++  AL ++V+++V  KG L
Sbjct: 3   YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSL 62

Query: 64  HTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSK 103
           +TYRFCDNVWTF+L D  F+       V ++KIVACD K
Sbjct: 63  NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101

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BLAST of MELO3C008106 vs. TrEMBL
Match: A0A0A0LMF8_CUCSA (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401990 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.4e-51
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106 vs. TrEMBL
Match: A0A0A0LQ01_CUCSA (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401490 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106 vs. TrEMBL
Match: M5XZ20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012329mg PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.4e-49
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IK
Sbjct: 68  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 127

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDS ETVGR+KIVACDSKLL+Q
Sbjct: 128 GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 173

[Close]
BLAST of MELO3C008106 vs. TrEMBL
Match: A5AJ11_VITVI (Transcription initiation factor IIA subunit 2 OS=Vitis vinifera GN=VIT_18s0001g07830 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-49
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNE+S E VGR+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEESQENVGRVKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106 vs. TrEMBL
Match: A0A0B2QX53_GLYSO (Transcription initiation factor IIA subunit 2 OS=Glycine soja GN=glysoja_019479 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 9.2e-49
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDS E VGR+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106 vs. TAIR10
Match: AT4G24440.1 (AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S))

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-49
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMT+ALESQVK+KV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106 vs. NCBI nr
Match: gi|659081192|ref|XP_008441202.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106 vs. NCBI nr
Match: gi|449441770|ref|XP_004138655.1| (PREDICTED: transcription initiation factor IIA subunit 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 6.3e-51
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106 vs. NCBI nr
Match: gi|449441772|ref|XP_004138656.1| (PREDICTED: transcription initiation factor IIA subunit 2-like [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 5.3e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106 vs. NCBI nr
Match: gi|645224670|ref|XP_008219223.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Prunus mume])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 100/106 (94.34%), Postives = 105/106 (99.06%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSSETVGR+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSSETVGRVKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106 vs. NCBI nr
Match: gi|596288514|ref|XP_007225949.1| (hypothetical protein PRUPE_ppa012329mg [Prunus persica])

HSP 1 Score: 202.6 bits (514), Expect = 3.5e-49
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IK
Sbjct: 68  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 127

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDS ETVGR+KIVACDSKLL+Q
Sbjct: 128 GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 173

The following BLAST results are available for this feature:
BLAST of MELO3C008106 vs. Swiss-Prot
Match NameE-valueIdentityDescription
T2AG_ORYSJ2.2e-4887.74Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN... [more]
T2AG_ORYSI2.2e-4887.74Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=T... [more]
T2AG_ARATH3.8e-4887.74Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S... [more]
T2AG_SCHPO3.7e-2753.54Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra... [more]
T2AG_ONCMY4.5e-2550.51Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss GN=gtf2a2 P... [more]
BLAST of MELO3C008106 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMF8_CUCSA4.4e-5197.17Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401990... [more]
A0A0A0LQ01_CUCSA3.7e-5096.23Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401490... [more]
M5XZ20_PRUPE2.4e-4993.40Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012329mg PE=4 SV=1[more]
A5AJ11_VITVI4.1e-4993.40Transcription initiation factor IIA subunit 2 OS=Vitis vinifera GN=VIT_18s0001g0... [more]
A0A0B2QX53_GLYSO9.2e-4992.45Transcription initiation factor IIA subunit 2 OS=Glycine soja GN=glysoja_019479 ... [more]
BLAST of MELO3C008106 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24440.12.2e-4987.74 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA... [more]
BLAST of MELO3C008106 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081192|ref|XP_008441202.1|4.4e-52100.00PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo][more]
gi|449441770|ref|XP_004138655.1|6.3e-5197.17PREDICTED: transcription initiation factor IIA subunit 2 isoform X1 [Cucumis sat... [more]
gi|449441772|ref|XP_004138656.1|5.3e-5096.23PREDICTED: transcription initiation factor IIA subunit 2-like [Cucumis sativus][more]
gi|645224670|ref|XP_008219223.1|1.2e-4994.34PREDICTED: transcription initiation factor IIA subunit 2 [Prunus mume][more]
gi|596288514|ref|XP_007225949.1|3.5e-4993.40hypothetical protein PRUPE_ppa012329mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003194TFIIA_gsu
IPR009083TFIIA_a-hlx
IPR009088TFIIA_b-brl
IPR015871TFIIA_gsu_C
IPR015872TFIIA_gsu_N
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005840 ribosome
cellular_component GO:0005672 transcription factor TFIIA complex
molecular_function GO:0003743 translation initiation factor activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU54312melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008106T1MELO3C008106T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU54312MU54312transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003194Transcription initiation factor IIA, gamma subunitPIRPIRSF009415TFIIA_gamma_humcoord: 1..106
score: 3.0
IPR003194Transcription initiation factor IIA, gamma subunitPANTHERPTHR10966TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 1..106
score: 8.6
IPR009083Transcription factor IIA, helicalunknownSSF47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 4..54
score: 2.07
IPR009088Transcription factor IIA, beta-barrelGENE3DG3DSA:2.30.18.10coord: 55..103
score: 3.2
IPR009088Transcription factor IIA, beta-barrelunknownSSF50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 52..102
score: 4.97
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 53..101
score: 1.3
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPRODOMPD009224coord: 1..50
score: 8.0
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalGENE3DG3DSA:1.10.287.190coord: 1..54
score: 5.2
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 4..49
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008106Silver-seed gourdcarmeB0023
MELO3C008106Silver-seed gourdcarmeB1051
MELO3C008106Cucumber (Chinese Long) v3cucmeB121
MELO3C008106Watermelon (97103) v2mewmbB279
MELO3C008106Wax gourdmewgoB341
MELO3C008106Cucumber (Gy14) v1cgymeB100
MELO3C008106Cucurbita maxima (Rimu)cmameB267
MELO3C008106Cucurbita maxima (Rimu)cmameB679
MELO3C008106Cucurbita moschata (Rifu)cmomeB258
MELO3C008106Cucurbita moschata (Rifu)cmomeB671
MELO3C008106Wild cucumber (PI 183967)cpimeB116
MELO3C008106Cucumber (Chinese Long) v2cumeB115
MELO3C008106Watermelon (Charleston Gray)mewcgB273
MELO3C008106Watermelon (97103) v1mewmB332
MELO3C008106Cucurbita pepo (Zucchini)cpemeB167
MELO3C008106Cucurbita pepo (Zucchini)cpemeB400
MELO3C008106Bottle gourd (USVL1VR-Ls)lsimeB259
MELO3C008106Cucumber (Gy14) v2cgybmeB099