MELO3C008031 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008031
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Gag-pro-like protein
Location	chr8 : 6938085 .. 6938477 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACACTTTTCCAAATCCTTCGTAGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGAGGGGGAGAAGTTTGGATGCGCCAACGAGAAGCAGTGTTTATTCCACTCTGAGATAGATGACCATTTCATTGAAGATTGTTGTGAGCTCAAGAATGAGGTACAAAAGTTGATGGATGCAAAGATTCTCTTGGTAGGACAAGTGAGCATGCAAGAAATCGAGGTCGATATGATTATTGATAAGGAAACTTCAAATGATACCTCAATTACAATTATCTCCGAGAATACTATTTCGCCTAATCTATTGGTTTATCAGTGTCCACCAAAATTTGAGTTGAACAATTGGGAGATCAAGAGGACGCTAAAAGTTTCTAAAGGATCACAAAAGTAA

mRNA sequence

ATGAATACACTTTTCCAAATCCTTCGTAGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGAGGGGGAGAAGTTTGGATGCGCCAACGAGAAGCAGTGTTTATTCCACTCTGAGATAGATGACCATTTCATTGAAGATTGTTGTGAGCTCAAGAATGAGGTACAAAAGTTGATGGATGCAAAGATTCTCTTGGTAGGACAAGTGAGCATGCAAGAAATCGAGGTCGATATGATTATTGATAAGGAAACTTCAAATGATACCTCAATTACAATTATCTCCGAGAATACTATTTCGCCTAATCTATTGGTTTATCAGTGTCCACCAAAATTTGAGTTGAACAATTGGGAGATCAAGAGGACGCTAAAAGTTTCTAAAGGATCACAAAAGTAA

Coding sequence (CDS)

ATGAATACACTTTTCCAAATCCTTCGTAGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGAGGGGGAGAAGTTTGGATGCGCCAACGAGAAGCAGTGTTTATTCCACTCTGAGATAGATGACCATTTCATTGAAGATTGTTGTGAGCTCAAGAATGAGGTACAAAAGTTGATGGATGCAAAGATTCTCTTGGTAGGACAAGTGAGCATGCAAGAAATCGAGGTCGATATGATTATTGATAAGGAAACTTCAAATGATACCTCAATTACAATTATCTCCGAGAATACTATTTCGCCTAATCTATTGGTTTATCAGTGTCCACCAAAATTTGAGTTGAACAATTGGGAGATCAAGAGGACGCTAAAAGTTTCTAAAGGATCACAAAAGTAA

Protein sequence

MNTLFQILRRAGYLSPRFNNDEGEKFGCANEKQCLFHSEIDDHFIEDCCELKNEVQKLMDAKILLVGQVSMQEIEVDMIIDKETSNDTSITIISENTISPNLLVYQCPPKFELNNWEIKRTLKVSKGSQK*

Homology

[Close]

BLAST of MELO3C008031 vs. TrEMBL
Match: A0A0A0KSJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528440 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-11
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 1  MNTLFQILRRAGYLSPRFNNDEGEKFG--CANEKQCLFHSEIDDHFIEDCCELKNEVQKL 60
          M  LFQI   AGY+  R + D+G   G    N+K CLFH    +H IE C E + EVQKL
Sbjct: 1  MRILFQIPHEAGYI--RLSVDDGNVDGKESINKKTCLFHLGTCEHSIETCSEFRFEVQKL 60

Query: 61 MDAKILLVGQVSMQEIEVDMIID 82
          MDAKIL+V Q ++QE E+D+I D
Sbjct: 61 MDAKILIVSQTNIQETEIDVIFD 81

[Close]

BLAST of MELO3C008031 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 1


Query: 1   MNTLFQILRRAGYLSPRFNNDEGEKFGCANEKQCLFHSEIDDHFIEDCCELKNEVQKLMD 60
           MNTLFQIL  AGYLSPRFNND+GEK GC N+++CLF+ E +DH IEDCCE KN VQKLMD
Sbjct: 431 MNTLFQILHGAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMD 490

Query: 61  AKILLVGQVSMQEIEVDMIID----KETSNDTSI---TIISENTISPNLLVYQCPPK 111
           AKILLVGQ+SMQEIEV+MI D    K+TSN+T+     ++      P+++ Y   PK
Sbjct: 491 AKILLVGQISMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIMSYIQKPK 547

[Close]

BLAST of MELO3C008031 vs. NCBI nr
Match: gi|700196230|gb|KGN51407.1| (hypothetical protein Csa_5G528440 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 6.0e-11
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 1  MNTLFQILRRAGYLSPRFNNDEGEKFG--CANEKQCLFHSEIDDHFIEDCCELKNEVQKL 60
          M  LFQI   AGY+  R + D+G   G    N+K CLFH    +H IE C E + EVQKL
Sbjct: 1  MRILFQIPHEAGYI--RLSVDDGNVDGKESINKKTCLFHLGTCEHSIETCSEFRFEVQKL 60

Query: 61 MDAKILLVGQVSMQEIEVDMIID 82
          MDAKIL+V Q ++QE E+D+I D
Sbjct: 61 MDAKILIVSQTNIQETEIDVIFD 81

The following BLAST results are available for this feature:

BLAST of MELO3C008031 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSJ3_CUCSA	4.2e-11	50.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528440 PE=4 SV=1	[more]

BLAST of MELO3C008031 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122237\|ref\|XP_008461036.1\|	1.5e-30	61.54	PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo]	[more]
gi\|700196230\|gb\|KGN51407.1\|	6.0e-11	50.60	hypothetical protein Csa_5G528440 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008031T1	MELO3C008031T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008031	Wax gourd	mewgoB654
MELO3C008031	Cucumber (Gy14) v1	cgymeB132
MELO3C008031	Cucurbita maxima (Rimu)	cmameB609
MELO3C008031	Cucurbita maxima (Rimu)	cmameB799
MELO3C008031	Cucurbita moschata (Rifu)	cmomeB598
MELO3C008031	Cucurbita moschata (Rifu)	cmomeB783
MELO3C008031	Wild cucumber (PI 183967)	cpimeB513
MELO3C008031	Cucumber (Chinese Long) v2	cumeB153
MELO3C008031	Cucumber (Chinese Long) v2	cumeB508
MELO3C008031	Watermelon (Charleston Gray)	mewcgB516
MELO3C008031	Watermelon (97103) v1	mewmB571
MELO3C008031	Cucurbita pepo (Zucchini)	cpemeB069
MELO3C008031	Cucurbita pepo (Zucchini)	cpemeB458
MELO3C008031	Bottle gourd (USVL1VR-Ls)	lsimeB150
MELO3C008031	Cucumber (Gy14) v2	cgybmeB446
MELO3C008031	Silver-seed gourd	carmeB0242
MELO3C008031	Silver-seed gourd	carmeB0806
MELO3C008031	Cucumber (Chinese Long) v3	cucmeB521
MELO3C008031	Watermelon (97103) v2	mewmbB516