MELO3C008030 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008030
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-directed DNA polymerase, putative
Location	chr8 : 6936573 .. 6936899 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTTGTCAAGACATTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTGGAAGAGGAAAGAGTGTTGCGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGCTAGAAGACATGCCTGCATACCCTCCAGGTTTTACTCTGCAAAGGTTGTCTAGTCCTCGCATGACTTATCCTACACAAAATCCTAATCCGATCACCCAACAGGAAAACCATGTGAGCGATCCAATGTCTACTCCAATTACAGAAATTGGTAAGAAAATTTCGGAAGAGTAG

mRNA sequence

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTTGTCAAGACATTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTGGAAGAGGAAAGAGTGTTGCGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGCTAGAAGACATGCCTGCATACCCTCCAGGTTTTACTCTGCAAAGGTTGTCTAGTCCTCGCATGACTTATCCTACACAAAATCCTAATCCGATCACCCAACAGGAAAACCATGTGAGCGATCCAATGTCTACTCCAATTACAGAAATTGGTAAGAAAATTTCGGAAGAGTAG

Coding sequence (CDS)

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTTGTCAAGACATTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTGGAAGAGGAAAGAGTGTTGCGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGCTAGAAGACATGCCTGCATACCCTCCAGGTTTTACTCTGCAAAGGTTGTCTAGTCCTCGCATGACTTATCCTACACAAAATCCTAATCCGATCACCCAACAGGAAAACCATGTGAGCGATCCAATGTCTACTCCAATTACAGAAATTGGTAAGAAAATTTCGGAAGAGTAG

Protein sequence

MDEQTNDQVQAVCQDIEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYPPGFTLQRLSSPRMTYPTQNPNPITQQENHVSDPMSTPITEIGKKISEE*

Homology

[Close]

BLAST of MELO3C008030 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 3.3e-47
Identity = 99/108 (91.67%), Postives = 100/108 (92.59%), Query Frame = 1


Query: 1   MDEQTNDQVQAVCQDIEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAV QD+EGLKDQLAKILELLT GRGKSV GISSQVEVDLNQVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTIGRGKSVTGISSQVEVDLNQVLEDMPAYP 60

Query: 61  PGFTLQRLSSPRMTYPTQNPNPITQQENHVSDPMSTPITEIGKKISEE 109
           PGFT QR SSPRMTY TQNPNPITQQENHVSDPMSTPITE GKKI EE
Sbjct: 61  PGFTPQRSSSPRMTYSTQNPNPITQQENHVSDPMSTPITESGKKILEE 108

[Close]

BLAST of MELO3C008030 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-45
Identity = 97/108 (89.81%), Postives = 100/108 (92.59%), Query Frame = 1


Query: 1   MDEQTNDQVQAVCQDIEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAV QD+EGLKDQLAKILEL TTGR KSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELFTTGRRKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61  PGFTLQRLSSPRMTYPTQNPNPITQQENHVSDPMSTPITEIGKKISEE 109
            GFT QR SSPRMTYPTQNPNPITQQ +HVSDPMSTPIT+ GKKISEE
Sbjct: 61  IGFTPQRSSSPRMTYPTQNPNPITQQTDHVSDPMSTPITKSGKKISEE 108

[Close]

BLAST of MELO3C008030 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-40
Identity = 92/111 (82.88%), Postives = 97/111 (87.39%), Query Frame = 1


Query: 1   MDEQTNDQVQAVCQDIEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60
           MDEQ+NDQVQAV QD+EGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDM  YP
Sbjct: 1   MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61  PGFTLQRLSSPRM---TYPTQNPNPITQQENHVSDPMSTPITEIGKKISEE 109
           PGFT Q+ SSPR+   TYPTQNPN  TQQ  HVSDP+ST ITE GKKISEE
Sbjct: 61  PGFTPQQSSSPRIVDRTYPTQNPNTTTQQAVHVSDPISTLITEGGKKISEE 111

[Close]

BLAST of MELO3C008030 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 8.1e-38
Identity = 91/115 (79.13%), Postives = 95/115 (82.61%), Query Frame = 1


Query: 1   MDEQTNDQVQAVCQDIEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAV QD+EGLKDQLAKILELLTTGRGKSVAG SSQVEVDLNQVLED+ AYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61  PGFTLQRLSSPRM---TYPTQ----NPNPITQQENHVSDPMSTPITEIGKKISEE 109
           P FT QR SSPRM   TYPT     NPN  TQQ  HVSD +STPIT+ GKKISEE
Sbjct: 61  PSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQQAAHVSDLISTPITKSGKKISEE 115

[Close]

BLAST of MELO3C008030 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-29
Identity = 74/93 (79.57%), Postives = 77/93 (82.80%), Query Frame = 1


Query: 1  MDEQTNDQVQAVCQDIEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVCQD+EGL+DQL KILELLTTGRGK+VAG SSQVEVDLNQVLEDM AY 
Sbjct: 1  MDEQTNDQVQAVCQDVEGLEDQLKKILELLTTGRGKNVAGTSSQVEVDLNQVLEDMSAYL 60

Query: 61 PGFTLQRLSSPRM---TYPTQ----NPNPITQQ 87
          PGFT QR SSPRM   TYPT     NPN  TQQ
Sbjct: 61 PGFTPQRSSSPRMVDRTYPTSFPMPNPNTTTQQ 93

The following BLAST results are available for this feature:

BLAST of MELO3C008030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093710\|ref\|XP_008447676.1\|	3.3e-47	91.67	PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo]	[more]
gi\|659130442\|ref\|XP_008465174.1\|	1.1e-45	89.81	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]
gi\|659114599\|ref\|XP_008457136.1\|	1.8e-40	82.88	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me...	[more]
gi\|659102853\|ref\|XP_008452348.1\|	8.1e-38	79.13	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo]	[more]
gi\|659122237\|ref\|XP_008461036.1\|	1.8e-29	79.57	PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008030T1	MELO3C008030T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008030	Cucumber (Chinese Long) v3	cucmeB521
MELO3C008030	Watermelon (97103) v2	mewmbB516
MELO3C008030	Wax gourd	mewgoB654
MELO3C008030	Cucumber (Gy14) v1	cgymeB132
MELO3C008030	Cucurbita maxima (Rimu)	cmameB609
MELO3C008030	Cucurbita maxima (Rimu)	cmameB799
MELO3C008030	Cucurbita moschata (Rifu)	cmomeB598
MELO3C008030	Cucurbita moschata (Rifu)	cmomeB783
MELO3C008030	Wild cucumber (PI 183967)	cpimeB513
MELO3C008030	Cucumber (Chinese Long) v2	cumeB153
MELO3C008030	Cucumber (Chinese Long) v2	cumeB508
MELO3C008030	Watermelon (Charleston Gray)	mewcgB516
MELO3C008030	Watermelon (97103) v1	mewmB571
MELO3C008030	Cucurbita pepo (Zucchini)	cpemeB069
MELO3C008030	Cucurbita pepo (Zucchini)	cpemeB458
MELO3C008030	Bottle gourd (USVL1VR-Ls)	lsimeB150
MELO3C008030	Cucumber (Gy14) v2	cgybmeB446
MELO3C008030	Silver-seed gourd	carmeB0242
MELO3C008030	Silver-seed gourd	carmeB0806