MELO3C007316 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C007316
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTransmembrane protein, putative
Locationchr8 : 2143279 .. 2144085 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCTCATTTAGCCTTTCGGAGCATCCAACACTTCAACACCAACAACAACAAAAAAAAAAAAAAAAATCTTTTACTTCTTCTTAAACTGATATCTCTAGAAGATGGGTGAAGAAGCTAAGATGATGAACAACATCAACGGTCAGAGATTGGGAAGGAGAATTTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCTATCTTCTCTAACAGTCACAGTACTCAACAACAACATTGAACATTTAGATAGACACAAACGTACATAGCTTCTATGTAATTTTGAGGTTGAAGAGATTAAGGTTGTAAATTTGTAGTGATATCAATGTCAATTTTATAACTTTTCAACTATTCCTTGTAATGCTTCAACTTTTCTCTATCCTTCAACTTTTCTCTATGAATTGGGGGAGAAACACCAAAAATGAAAGAATCAAATCTGTCTAATTCTAAGAAATGGGTAACAGAAAAAAGAGGAAAAACTAAAAGAATTTTGTGGTTATTGGTGAAGTTTAACCGATCCGGGAGTTGTCTCTGCCGAATACAAGAGTGGTAGCCCAGTTGACAGCCACATAAAACCTGTTTCTCCAGCTGATTACACGAGTCAGATATGCAGATCGCCATATGAGCCAACTCAAGAACCCTGCTAGTGATATGCCTTTTGCATCCTGTTAATACCCACAATCCAAAAACATTTCACGACCCCAAAGTTATTGATATTTGAATAAATCAAGATTGATTGTTTTTTTCTTTTTACCTTGGACTGGCGTAGAT

mRNA sequence

CCACCTCATTTAGCCTTTCGGAGCATCCAACACTTCAACACCAACAACAACAAAAAAAAAAAAAAAAATCTTTTACTTCTTCTTAAACTGATATCTCTAGAAGATGGGTGAAGAAGCTAAGATGATGAACAACATCAACGGTCAGAGATTGGGAAGGAGAATTTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCTATCTTCTCTAACAGTCACAGTACTCAACAACAACATTGAACATTTAGATAGACACAAACGTACATAGCTTCTATGTAATTTTGAGGTTGAAGAGATTAAGGTTGTAAATTTGTAGTGATATCAATGTCAATTTTATAACTTTTCAACTATTCCTTGTAATGCTTCAACTTTTCTCTATCCTTCAACTTTTCTCTATGAATTGGGGGAGAAACACCAAAAATGAAAGAATCAAATCTGTCTAATTCTAAGAAATGGGTAACAGAAAAAAGAGGAAAAACTAAAAGAATTTTGTGGTTATTGGTGAAGTTTAACCGATCCGGGAGTTGTCTCTGCCGAATACAAGAGTGGTAGCCCAGTTGACAGCCACATAAAACCTGTTTCTCCAGCTGATTACACGAGTCAGATATGCAGATCGCCATATGAGCCAACTCAAGAACCCTGCTAGTGATATGCCTTTTGCATCCTGTTAATACCCACAATCCAAAAACATTTCACGACCCCAAAGTTATTGATATTTGAATAAATCAAGATTGATTGTTTTTTTCTTTTTACCTTGGACTGGCGTAGAT

Coding sequence (CDS)

ATGGGTGAAGAAGCTAAGATGATGAACAACATCAACGGTCAGAGATTGGGAAGGAGAATTTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCTATCTTCTCTAACAGTCACAGTACTCAACAACAACATTGA

Protein sequence

MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH*
Homology
[Close]
BLAST of MELO3C007316 vs. TrEMBL
Match: B9S603_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062910 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-07
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 1 

Query: 8  MNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQ 56
          M  ++ +++ RR+SGR IPKRGQVK+GI+VGLA +V SIFS+SHS+++
Sbjct: 6  MGMMSDRKVSRRLSGRPIPKRGQVKVGIVVGLAHSVASIFSHSHSSRR 53

[Close]
BLAST of MELO3C007316 vs. NCBI nr
Match: gi|223539321|gb|EEF40912.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-07
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 1 

Query: 8  MNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQ 56
          M  ++ +++ RR+SGR IPKRGQVK+GI+VGLA +V SIFS+SHS+++
Sbjct: 6  MGMMSDRKVSRRLSGRPIPKRGQVKVGIVVGLAHSVASIFSHSHSSRR 53

The following BLAST results are available for this feature:
BLAST of MELO3C007316 vs. TrEMBL
Match NameE-valueIdentityDescription
B9S603_RICCO6.1e-0758.33Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062910 PE=4 SV=1[more]
BLAST of MELO3C007316 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223539321|gb|EEF40912.1|8.8e-0758.33conserved hypothetical protein [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45275melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007316T1MELO3C007316T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45275MU45275transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36615FAMILY NOT NAMEDcoord: 1..55
score: 8.4
NoneNo IPR availablePANTHERPTHR36615:SF2SUBFAMILY NOT NAMEDcoord: 1..55
score: 8.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C007316Cla001354Watermelon (97103) v1mewmB572
MELO3C007316Bhi03G000366Wax gourdmewgoB635
MELO3C007316CmaCh07G002710Cucurbita maxima (Rimu)cmameB798
MELO3C007316CmaCh03G004820Cucurbita maxima (Rimu)cmameB622
MELO3C007316CmoCh03G005010Cucurbita moschata (Rifu)cmomeB613
MELO3C007316Lsi01G003500Bottle gourd (USVL1VR-Ls)lsimeB149
MELO3C007316Carg07803Silver-seed gourdcarmeB0642
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C007316Cucumber (Gy14) v1cgymeB027
MELO3C007316Cucumber (Gy14) v1cgymeB201
MELO3C007316Cucumber (Gy14) v1cgymeB249
MELO3C007316Cucurbita maxima (Rimu)cmameB211
MELO3C007316Cucurbita maxima (Rimu)cmameB381
MELO3C007316Cucurbita maxima (Rimu)cmameB611
MELO3C007316Cucurbita moschata (Rifu)cmomeB195
MELO3C007316Cucurbita moschata (Rifu)cmomeB373
MELO3C007316Cucurbita moschata (Rifu)cmomeB476
MELO3C007316Cucurbita moschata (Rifu)cmomeB600
MELO3C007316Cucurbita moschata (Rifu)cmomeB782
MELO3C007316Wild cucumber (PI 183967)cpimeB086
MELO3C007316Wild cucumber (PI 183967)cpimeB512
MELO3C007316Wild cucumber (PI 183967)cpimeB575
MELO3C007316Cucumber (Chinese Long) v2cumeB083
MELO3C007316Cucumber (Chinese Long) v2cumeB507
MELO3C007316Cucumber (Chinese Long) v2cumeB564
MELO3C007316Watermelon (Charleston Gray)mewcgB515
MELO3C007316Watermelon (Charleston Gray)mewcgB519
MELO3C007316Watermelon (Charleston Gray)mewcgB524
MELO3C007316Watermelon (97103) v1mewmB563
MELO3C007316Watermelon (97103) v1mewmB597
MELO3C007316Cucurbita pepo (Zucchini)cpemeB065
MELO3C007316Cucurbita pepo (Zucchini)cpemeB071
MELO3C007316Cucurbita pepo (Zucchini)cpemeB457
MELO3C007316Cucurbita pepo (Zucchini)cpemeB485
MELO3C007316Cucurbita pepo (Zucchini)cpemeB707
MELO3C007316Bottle gourd (USVL1VR-Ls)lsimeB119
MELO3C007316Bottle gourd (USVL1VR-Ls)lsimeB228
MELO3C007316Cucumber (Gy14) v2cgybmeB076
MELO3C007316Cucumber (Gy14) v2cgybmeB445
MELO3C007316Silver-seed gourdcarmeB0034
MELO3C007316Silver-seed gourdcarmeB0153
MELO3C007316Silver-seed gourdcarmeB0866
MELO3C007316Silver-seed gourdcarmeB0917
MELO3C007316Silver-seed gourdcarmeB0918
MELO3C007316Silver-seed gourdcarmeB0931
MELO3C007316Cucumber (Chinese Long) v3cucmeB092
MELO3C007316Cucumber (Chinese Long) v3cucmeB520
MELO3C007316Watermelon (97103) v2mewmbB515
MELO3C007316Watermelon (97103) v2mewmbB531
MELO3C007316Wax gourdmewgoB666
MELO3C007316Melon (DHL92) v3.5.1memeB075
MELO3C007316Melon (DHL92) v3.5.1memeB100