MELO3C007276.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C007276.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionAP2/B3-like transcriptional factor family protein, putative
Locationchr08 : 1896267 .. 1896647 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAATTACAAGCAGAAGCAGCTGCAACAATTTAGTTTGTCGTCAAATATAGATGATCAGGTTAAAGACGAAGAAGAAGATGCTTCTTTGGCTTTGTTGATCGAAGAGCTTAAACACAAAGCTGAAGACCACCACAGCCATCCCCCGCCCTATTTCGCTACTAATCTACCCAACAATGCTATGATTCATTCCACAAATAATATCAATTATAAGGAACAAGTAATATTAGATGATTTCCAAGGGATTAATAATGGTAATAATAATGGTAATGTGGGGTTTGAAGATTGCTTTGGAGGCCTTGATACTCTTCCTGAAGTCAGTGGATTCAAGTTCCCTCTTTTTGACTATTTCCCCGGTAATAATGGCACAACCTGA

mRNA sequence

ATGGAAGAAAATTACAAGCAGAAGCAGCTGCAACAATTTAGTTTGTCGTCAAATATAGATGATCAGGTTAAAGACGAAGAAGAAGATGCTTCTTTGGCTTTGTTGATCGAAGAGCTTAAACACAAAGCTGAAGACCACCACAGCCATCCCCCGCCCTATTTCGCTACTAATCTACCCAACAATGCTATGATTCATTCCACAAATAATATCAATTATAAGGAACAAGTAATATTAGATGATTTCCAAGGGATTAATAATGGTAATAATAATGGTAATGTGGGGTTTGAAGATTGCTTTGGAGGCCTTGATACTCTTCCTGAAGTCAGTGGATTCAAGTTCCCTCTTTTTGACTATTTCCCCGGTAATAATGGCACAACCTGA

Coding sequence (CDS)

ATGGAAGAAAATTACAAGCAGAAGCAGCTGCAACAATTTAGTTTGTCGTCAAATATAGATGATCAGGTTAAAGACGAAGAAGAAGATGCTTCTTTGGCTTTGTTGATCGAAGAGCTTAAACACAAAGCTGAAGACCACCACAGCCATCCCCCGCCCTATTTCGCTACTAATCTACCCAACAATGCTATGATTCATTCCACAAATAATATCAATTATAAGGAACAAGTAATATTAGATGATTTCCAAGGGATTAATAATGGTAATAATAATGGTAATGTGGGGTTTGAAGATTGCTTTGGAGGCCTTGATACTCTTCCTGAAGTCAGTGGATTCAAGTTCCCTCTTTTTGACTATTTCCCCGGTAATAATGGCACAACCTGA

Protein sequence

MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPNNAMIHSTNNINYKEQVILDDFQGINNGNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDYFPGNNGTT
Homology
[Close]
BLAST of MELO3C007276.2 vs. NCBI nr
Match: KGN49235.1 (hypothetical protein Csa_6G517430 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 2.9e-51
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 0 

Query: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60
           MEE+YKQKQ QQFSLSSNI+DQVKDEEEDASLALLIEELKHKAEDHHSHP  +F  N P 
Sbjct: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60

Query: 61  NAMIHSTNNINYKEQVILDDFQGINNGN---NNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           N MI+STN+INYKEQ+ILDDFQGINN N   NNGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120

Query: 121 YFPGNNGT 126
           YF  NNGT
Sbjct: 121 YFTSNNGT 128

[Close]
BLAST of MELO3C007276.2 vs. NCBI nr
Match: XP_011658520.1 (PREDICTED: B3 domain-containing transcription factor LEC2 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 2.4e-45
Identity = 99/128 (77.34%), Postives = 105/128 (82.03%), Query Frame = 0 

Query: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60
           MEE+YK          SNI+DQVKDEEEDASLALLIEELKHKAEDHHSHP  +F  N P 
Sbjct: 287 MEEDYKXXXXXXXXXXSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 346

Query: 61  NAMIHSTNNINYKEQVILDDFQGINNGN---NNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           N MI+STN+INYKEQ+ILDDFQGINN N   NNGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 347 NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 406

Query: 121 YFPGNNGT 126
           YF  NNGT
Sbjct: 407 YFTSNNGT 414

[Close]
BLAST of MELO3C007276.2 vs. NCBI nr
Match: XP_022142260.1 (B3 domain-containing transcription factor LEC2-like [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 7.0e-05
Identity = 28/41 (68.29%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 78  LDDFQGINNGNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDY 119
           LD +Q INN  NN N GFEDCFGGLD LPEV  F   LFDY
Sbjct: 140 LDHYQSINNNYNNSN-GFEDCFGGLDPLPEVGRFNCSLFDY 179

[Close]
BLAST of MELO3C007276.2 vs. NCBI nr
Match: XP_022978701.1 (B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima] >XP_022978702.1 B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima] >XP_022978703.1 B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 79  DDFQGINNGNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDY 119
           +D Q +N        G EDCF GLDTLPEVSGFKFPLFDY
Sbjct: 260 EDLQAVN--------GLEDCFRGLDTLPEVSGFKFPLFDY 291

[Close]
BLAST of MELO3C007276.2 vs. NCBI nr
Match: XP_022978700.1 (B3 domain-containing transcription factor LEC2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 79  DDFQGINNGNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDY 119
           +D Q +N        G EDCF GLDTLPEVSGFKFPLFDY
Sbjct: 411 EDLQAVN--------GLEDCFRGLDTLPEVSGFKFPLFDY 442

[Close]
BLAST of MELO3C007276.2 vs. TrEMBL
Match: tr|A0A0A0KHN2|A0A0A0KHN2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517430 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.9e-51
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 0 

Query: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60
           MEE+YKQKQ QQFSLSSNI+DQVKDEEEDASLALLIEELKHKAEDHHSHP  +F  N P 
Sbjct: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60

Query: 61  NAMIHSTNNINYKEQVILDDFQGINNGN---NNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           N MI+STN+INYKEQ+ILDDFQGINN N   NNGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120

Query: 121 YFPGNNGT 126
           YF  NNGT
Sbjct: 121 YFTSNNGT 128

The following BLAST results are available for this feature:
BLAST of MELO3C007276.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49235.12.9e-5184.38hypothetical protein Csa_6G517430 [Cucumis sativus][more]
XP_011658520.12.4e-4577.34PREDICTED: B3 domain-containing transcription factor LEC2 [Cucumis sativus][more]
XP_022142260.17.0e-0568.29B3 domain-containing transcription factor LEC2-like [Momordica charantia][more]
XP_022978701.12.0e-0465.00B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima] >XP... [more]
XP_022978700.12.0e-0465.00B3 domain-containing transcription factor LEC2 isoform X1 [Cucurbita maxima][more]
BLAST of MELO3C007276.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C007276.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C007276.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHN2|A0A0A0KHN2_CUCSA1.9e-5184.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517430 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007276.2.1MELO3C007276.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C007276.2Csa6G517430Cucumber (Chinese Long) v2cumedB486
MELO3C007276.2CSPI06G34700Wild cucumber (PI 183967)cpimedB496
MELO3C007276.2CsaV3_6G050200Cucumber (Chinese Long) v3cucmedB508
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C007276.2Cucumber (Gy14) v2cgybmedB072
MELO3C007276.2Cucumber (Gy14) v2cgybmedB442
MELO3C007276.2Cucurbita maxima (Rimu)cmamedB233
MELO3C007276.2Cucumber (Gy14) v1cgymedB025
MELO3C007276.2Cucumber (Gy14) v1cgymedB188
MELO3C007276.2Cucumber (Gy14) v1cgymedB199
MELO3C007276.2Cucurbita maxima (Rimu)cmamedB047
MELO3C007276.2Cucurbita maxima (Rimu)cmamedB441
MELO3C007276.2Cucurbita maxima (Rimu)cmamedB521
MELO3C007276.2Cucurbita maxima (Rimu)cmamedB564
MELO3C007276.2Cucurbita maxima (Rimu)cmamedB704
MELO3C007276.2Cucurbita maxima (Rimu)cmamedB897
MELO3C007276.2Cucurbita moschata (Rifu)cmomedB038
MELO3C007276.2Cucurbita moschata (Rifu)cmomedB217
MELO3C007276.2Cucurbita moschata (Rifu)cmomedB428
MELO3C007276.2Cucurbita moschata (Rifu)cmomedB510
MELO3C007276.2Cucurbita moschata (Rifu)cmomedB695
MELO3C007276.2Cucurbita moschata (Rifu)cmomedB886
MELO3C007276.2Cucurbita pepo (Zucchini)cpemedB054
MELO3C007276.2Cucurbita pepo (Zucchini)cpemedB081
MELO3C007276.2Cucurbita pepo (Zucchini)cpemedB540
MELO3C007276.2Cucurbita pepo (Zucchini)cpemedB572
MELO3C007276.2Wild cucumber (PI 183967)cpimedB076
MELO3C007276.2Wild cucumber (PI 183967)cpimedB320
MELO3C007276.2Cucumber (Chinese Long) v2cumedB077
MELO3C007276.2Cucumber (Chinese Long) v2cumedB318
MELO3C007276.2Melon (DHL92) v3.6.1medmedB074
MELO3C007276.2Bottle gourd (USVL1VR-Ls)lsimedB156
MELO3C007276.2Bottle gourd (USVL1VR-Ls)lsimedB239
MELO3C007276.2Watermelon (Charleston Gray)medwcgB507
MELO3C007276.2Watermelon (Charleston Gray)medwcgB510
MELO3C007276.2Watermelon (Charleston Gray)medwcgB518
MELO3C007276.2Watermelon (97103) v1medwmB549
MELO3C007276.2Watermelon (97103) v1medwmB561
MELO3C007276.2Watermelon (97103) v1medwmB584
MELO3C007276.2Silver-seed gourdcarmedB0156
MELO3C007276.2Silver-seed gourdcarmedB0180
MELO3C007276.2Silver-seed gourdcarmedB0560
MELO3C007276.2Silver-seed gourdcarmedB0652
MELO3C007276.2Silver-seed gourdcarmedB0937
MELO3C007276.2Cucumber (Chinese Long) v3cucmedB085
MELO3C007276.2Cucumber (Chinese Long) v3cucmedB326
MELO3C007276.2Watermelon (97103) v2medwmbB507
MELO3C007276.2Watermelon (97103) v2medwmbB515
MELO3C007276.2Watermelon (97103) v2medwmbB523
MELO3C007276.2Wax gourdmedwgoB641
MELO3C007276.2Wax gourdmedwgoB680