MELO3C007252 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007252
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	MLO-like protein
Location	chr8 : 1741459 .. 1743107 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCGTGCTTTCAAAGAGAGATAGCAGATTTGGTAATAGGAGTTTCTGTGGGGGTGTTGGTGCAGTTCATTTGTGGTTATGTTACTCTCCCTCTCTATGCACTTGTAGCTCAGGCAAGTACGCTAAATTGTTCCTCACCTTTCATCAACCAATTTGGTTACATTAAAAAAAAAAAAAAAAAAAAAGGCTTTTAAAACTTTTCTTAAATTTTAATTGTGGTCTTCATATAATGATCCAATATTTGTTCTGAGAATGCTTTTAAAAATGATATATCATTTCAATAATTTAAAAATACATCTAATTAGAATCAATACATGTTTAACAAGTATCGAATGCTGAACTGTTTCAATTAGAGTCAAACATGAATGCATTACCTAGGCTAAAGTGTAGAGCTTTTCGTGAGTATGATCCAATTACATGATTCCTTAACAGTTAACAGTTATAACCTTTTTACTTATGTCATGTACTACCTTAGATTGTAATCTTACTTTCTTTGTCCCTCTCGATTGAGCTCCTTTCTTTCCTTCACACTCTCGTTGTGTTCTTTCCTCATTTTCTCCCTCCCGTGCTTGTAGCCACTGTCTGACCATTCATCATCGATTTTTATAGTCGATTGTGCTTGTACTTTAGACCACCAACTGGGTAGACATCGTCTACATTATTGAACCCTTGAACCCCGTGCTTCTAGCCTTGCCTTGTACCCATTTATCTCGAGTGCGAGAATCGCCAAGGGAGAAACATGAGAATTTGCTCAGCTTCTAATGCTGGAAAATGAGGGGTAAAAAAAAAATAGAAACACGATGATATGAGAAGGTAGTGCGAACAAGAGGGACAAATAAAATATGTATATCGAGTATTATCTAAATCCTTTATAATGCGAGCCATTAGTTTTCATTATATTTTTTAGTTTCGTTGGTCTATAATCATCAAAATTAATTTGCAAATGAACAGTTCATAAATTTTACATAAAATATTAAAAAAAAAAAAAAATAAACAAATATGGTTGGCCAGTACAGTTACTTATCATAATATTTGTTTAAAAAAGATGGGGAGTTCGATGAAGAAAACGGTATTCACGGAGGGGGTGGTTGAAGGCCTGAGGAAATGGCAAGGAAGAGCGAAGAAAAAGGTTGCTCGAAGGCGAAGATCAGGCCAACATGGCTGCGACTACAACTTCTCATCACAGTCGCCGCCGCGTACATCAGTTGACGCCGGCGTTGACTCGCCGCCATCTTTCAGACTGGAGGCGGCGCCGCCCATGGCATCAGTGGATTATTATAATGGTCGTTTACAAGGGGCGGGTGCCAATAATAACAAACAATATAATAATAACAACACCACCACTTGTTCGGCTGCTGTTTCAGTTAGTGGCGATGAGGATAAACTAAAAGGCAAAAAACCAATCGAGGAGGAGGCGGATCACAAACCCATCTCATTGGATGCCTTTGATTGGGCTACCAAAATACACCGTAATTTTTCAAGACATGCAATGTAGTGTGTTTTTATACATTATATATGTTTCTTTTGCTTCATAGAATATGATCTGTATTATATCTTATATGTTTTTGTACATTAATTATATTCTAGTAATATTGGTTTGAATAAATAAATCAATTGCACTAGTGTAAATTTACATCATATTTTCTTC

mRNA sequence

AGATCGTGCTTTCAAAGAGAGATAGCAGATTTGGTAATAGGAGTTTCTGTGGGGGTGTTGGTGCAGTTCATTTGTGGTTATGTTACTCTCCCTCTCTATGCACTTGTAGCTCAGATGGGGAGTTCGATGAAGAAAACGGTATTCACGGAGGGGGTGGTTGAAGGCCTGAGGAAATGGCAAGGAAGAGCGAAGAAAAAGGTTGCTCGAAGGCGAAGATCAGGCCAACATGGCTGCGACTACAACTTCTCATCACAGTCGCCGCCGCGTACATCAGTTGACGCCGGCGTTGACTCGCCGCCATCTTTCAGACTGGAGGCGGCGCCGCCCATGGCATCAGTGGATTATTATAATGGTCGTTTACAAGGGGCGGGTGCCAATAATAACAAACAATATAATAATAACAACACCACCACTTGTTCGGCTGCTGTTTCAGTTAGTGGCGATGAGGATAAACTAAAAGGCAAAAAACCAATCGAGGAGGAGGCGGATCACAAACCCATCTCATTGGATGCCTTTGATTGGGCTACCAAAATACACCGTAATTTTTCAAGACATGCAATGTAGTGTGTTTTTATACATTATATATGTTTCTTTTGCTTCATAGAATATGATCTGTATTATATCTTATATGTTTTTGTACATTAATTATATTCTAGTAATATTGGTTTGAATAAATAAATCAATTGCACTAGTGTAAATTTACATCATATTTTCTTC

Coding sequence (CDS)

ATGGGGAGTTCGATGAAGAAAACGGTATTCACGGAGGGGGTGGTTGAAGGCCTGAGGAAATGGCAAGGAAGAGCGAAGAAAAAGGTTGCTCGAAGGCGAAGATCAGGCCAACATGGCTGCGACTACAACTTCTCATCACAGTCGCCGCCGCGTACATCAGTTGACGCCGGCGTTGACTCGCCGCCATCTTTCAGACTGGAGGCGGCGCCGCCCATGGCATCAGTGGATTATTATAATGGTCGTTTACAAGGGGCGGGTGCCAATAATAACAAACAATATAATAATAACAACACCACCACTTGTTCGGCTGCTGTTTCAGTTAGTGGCGATGAGGATAAACTAAAAGGCAAAAAACCAATCGAGGAGGAGGCGGATCACAAACCCATCTCATTGGATGCCTTTGATTGGGCTACCAAAATACACCGTAATTTTTCAAGACATGCAATGTAG

Protein sequence

MGSSMKKTVFTEGVVEGLRKWQGRAKKKVARRRRSGQHGCDYNFSSQSPPRTSVDAGVDSPPSFRLEAAPPMASVDYYNGRLQGAGANNNKQYNNNNTTTCSAAVSVSGDEDKLKGKKPIEEEADHKPISLDAFDWATKIHRNFSRHAM*

Homology

[Close]

BLAST of MELO3C007252 vs. TrEMBL
Match: A0A0A0KHR5_CUCSA (MLO-like protein OS=Cucumis sativus GN=MLO PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.4e-63
Identity = 133/149 (89.26%), Postives = 137/149 (91.95%), Query Frame = 1


Query: 1   MGSSMKKTVFTEGVVEGLRKWQGRAKKKVARRRRSGQHGCDYNFSSQSPPRTSVDAGVDS 60
           MGSSMKKTVFTEGVVEGLRKW+GRAKKKVARR+R GQHGCDYNF SQSPPRTSVDAGVDS
Sbjct: 397 MGSSMKKTVFTEGVVEGLRKWKGRAKKKVARRQR-GQHGCDYNF-SQSPPRTSVDAGVDS 456

Query: 61  PPSFRLEAAPPMASVDYYNGRLQGAGANNNKQYNNNNTTTCSAAVSVSGDEDKLKGKKPI 120
           PPSFRLEA  PMASVDYY GRLQ AGANNNKQYNNNN  +CSAAVSV+GDEDKLKGKKPI
Sbjct: 457 PPSFRLEAT-PMASVDYY-GRLQLAGANNNKQYNNNN-NSCSAAVSVNGDEDKLKGKKPI 516

Query: 121 EEEADHKPISLDAFDWATKIHRNFSRHAM 150
            EEAD K ISLDAFDWA KIHRNFSRHAM
Sbjct: 517 -EEADQKSISLDAFDWANKIHRNFSRHAM 539

[Close]

BLAST of MELO3C007252 vs. NCBI nr
Match: gi|659078584|ref|XP_008439801.1| (PREDICTED: MLO-like protein 6 [Cucumis melo])

HSP 1 Score: 309.3 bits (791), Expect = 3.7e-81
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


Query: 1   MGSSMKKTVFTEGVVEGLRKWQGRAKKKVARRRRSGQHGCDYNFSSQSPPRTSVDAGVDS 60
           MGSSMKKTVFTEGVVEGLRKWQGRAKKKVARRRRSGQHGCDYNFSSQSPPRTSVDAGVDS
Sbjct: 397 MGSSMKKTVFTEGVVEGLRKWQGRAKKKVARRRRSGQHGCDYNFSSQSPPRTSVDAGVDS 456

Query: 61  PPSFRLEAAPPMASVDYYNGRLQGAGANNNKQYNNNNTTTCSAAVSVSGDEDKLKGKKPI 120
           PPSFRLEAAPPMASVDYYNGRLQGAGANNNKQYNNNNTTTCSAAVSVSGDEDKLKGKKPI
Sbjct: 457 PPSFRLEAAPPMASVDYYNGRLQGAGANNNKQYNNNNTTTCSAAVSVSGDEDKLKGKKPI 516

Query: 121 EEEADHKPISLDAFDWATKIHRNFSRHAM 150
           EEEADHKPISLDAFDWATKIHRNFSRHAM
Sbjct: 517 EEEADHKPISLDAFDWATKIHRNFSRHAM 545

[Close]

BLAST of MELO3C007252 vs. NCBI nr
Match: gi|449434318|ref|XP_004134943.1| (PREDICTED: MLO-like protein 12 isoform X1 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 7.7e-63
Identity = 133/149 (89.26%), Postives = 137/149 (91.95%), Query Frame = 1


Query: 1   MGSSMKKTVFTEGVVEGLRKWQGRAKKKVARRRRSGQHGCDYNFSSQSPPRTSVDAGVDS 60
           MGSSMKKTVFTEGVVEGLRKW+GRAKKKVARR+R GQHGCDYNF SQSPPRTSVDAGVDS
Sbjct: 397 MGSSMKKTVFTEGVVEGLRKWKGRAKKKVARRQR-GQHGCDYNF-SQSPPRTSVDAGVDS 456

Query: 61  PPSFRLEAAPPMASVDYYNGRLQGAGANNNKQYNNNNTTTCSAAVSVSGDEDKLKGKKPI 120
           PPSFRLEA  PMASVDYY GRLQ AGANNNKQYNNNN  +CSAAVSV+GDEDKLKGKKPI
Sbjct: 457 PPSFRLEAT-PMASVDYY-GRLQLAGANNNKQYNNNN-NSCSAAVSVNGDEDKLKGKKPI 516

Query: 121 EEEADHKPISLDAFDWATKIHRNFSRHAM 150
            EEAD K ISLDAFDWA KIHRNFSRHAM
Sbjct: 517 -EEADQKSISLDAFDWANKIHRNFSRHAM 539

[Close]

BLAST of MELO3C007252 vs. NCBI nr
Match: gi|778720974|ref|XP_011658228.1| (PREDICTED: MLO-like protein 12 isoform X2 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 7.7e-63
Identity = 133/149 (89.26%), Postives = 137/149 (91.95%), Query Frame = 1


Query: 1   MGSSMKKTVFTEGVVEGLRKWQGRAKKKVARRRRSGQHGCDYNFSSQSPPRTSVDAGVDS 60
           MGSSMKKTVFTEGVVEGLRKW+GRAKKKVARR+R GQHGCDYNF SQSPPRTSVDAGVDS
Sbjct: 371 MGSSMKKTVFTEGVVEGLRKWKGRAKKKVARRQR-GQHGCDYNF-SQSPPRTSVDAGVDS 430

Query: 61  PPSFRLEAAPPMASVDYYNGRLQGAGANNNKQYNNNNTTTCSAAVSVSGDEDKLKGKKPI 120
           PPSFRLEA  PMASVDYY GRLQ AGANNNKQYNNNN  +CSAAVSV+GDEDKLKGKKPI
Sbjct: 431 PPSFRLEAT-PMASVDYY-GRLQLAGANNNKQYNNNN-NSCSAAVSVNGDEDKLKGKKPI 490

Query: 121 EEEADHKPISLDAFDWATKIHRNFSRHAM 150
            EEAD K ISLDAFDWA KIHRNFSRHAM
Sbjct: 491 -EEADQKSISLDAFDWANKIHRNFSRHAM 513

The following BLAST results are available for this feature:

BLAST of MELO3C007252 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHR5_CUCSA	5.4e-63	89.26	MLO-like protein OS=Cucumis sativus GN=MLO PE=3 SV=1	[more]

BLAST of MELO3C007252 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078584\|ref\|XP_008439801.1\|	3.7e-81	100.00	PREDICTED: MLO-like protein 6 [Cucumis melo]	[more]
gi\|449434318\|ref\|XP_004134943.1\|	7.7e-63	89.26	PREDICTED: MLO-like protein 12 isoform X1 [Cucumis sativus]	[more]
gi\|778720974\|ref\|XP_011658228.1\|	7.7e-63	89.26	PREDICTED: MLO-like protein 12 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004326	Mlo

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007252T1	MELO3C007252T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004326	Mlo-related protein	PFAM	PF03094	Mlo	coord: 1..46 score: 6.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007252	Cla009651	Watermelon (97103) v1	mewmB572
MELO3C007252	ClCG01G023340	Watermelon (Charleston Gray)	mewcgB515
MELO3C007252	Bhi03G000277	Wax gourd	mewgoB635
MELO3C007252	CSPI06G34990	Wild cucumber (PI 183967)	cpimeB512
MELO3C007252	Cucsa.046560	Cucumber (Gy14) v1	cgymeB027
MELO3C007252	CmaCh03G012970	Cucurbita maxima (Rimu)	cmameB618
MELO3C007252	CmoCh03G012940	Cucurbita moschata (Rifu)	cmomeB606
MELO3C007252	Lsi01G002800	Bottle gourd (USVL1VR-Ls)	lsimeB149
MELO3C007252	Cp4.1LG10g05200	Cucurbita pepo (Zucchini)	cpemeB061
MELO3C007252	CsaV3_6G050470	Cucumber (Chinese Long) v3	cucmeB520

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007252	Silver-seed gourd	carmeB0554
MELO3C007252	Silver-seed gourd	carmeB0642
MELO3C007252	Silver-seed gourd	carmeB0931
MELO3C007252	Cucumber (Chinese Long) v3	cucmeB092
MELO3C007252	Cucumber (Chinese Long) v3	cucmeB162
MELO3C007252	Watermelon (97103) v2	mewmbB515
MELO3C007252	Watermelon (97103) v2	mewmbB530
MELO3C007252	Wax gourd	mewgoB633
MELO3C007252	Wax gourd	mewgoB665
MELO3C007252	Melon (DHL92) v3.5.1	memeB075
MELO3C007252	Melon (DHL92) v3.5.1	memeB059
MELO3C007252	Cucumber (Gy14) v1	cgymeB201
MELO3C007252	Cucurbita maxima (Rimu)	cmameB211
MELO3C007252	Cucurbita maxima (Rimu)	cmameB381
MELO3C007252	Cucurbita maxima (Rimu)	cmameB798
MELO3C007252	Cucurbita moschata (Rifu)	cmomeB195
MELO3C007252	Cucurbita moschata (Rifu)	cmomeB373
MELO3C007252	Cucurbita moschata (Rifu)	cmomeB782
MELO3C007252	Wild cucumber (PI 183967)	cpimeB086
MELO3C007252	Wild cucumber (PI 183967)	cpimeB160
MELO3C007252	Cucumber (Chinese Long) v2	cumeB083
MELO3C007252	Cucumber (Chinese Long) v2	cumeB507
MELO3C007252	Watermelon (Charleston Gray)	mewcgB523
MELO3C007252	Watermelon (97103) v1	mewmB562
MELO3C007252	Cucurbita pepo (Zucchini)	cpemeB457
MELO3C007252	Cucurbita pepo (Zucchini)	cpemeB485
MELO3C007252	Bottle gourd (USVL1VR-Ls)	lsimeB228
MELO3C007252	Cucumber (Gy14) v2	cgybmeB076
MELO3C007252	Cucumber (Gy14) v2	cgybmeB137
MELO3C007252	Cucumber (Gy14) v2	cgybmeB445