MELO3C007102.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007102.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr08 : 803893 .. 804096 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATCGAGAAAACAAGAAAACAAATGAAACCAATCAACAGGGCTGGGCAACACCAAGAAATCGACGAAGATCAAGTTAATGCGGGAACAGTCTGGCTGGAGAAATGTGACCTGAAATTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAACCGGAAAGGACCGAGAACGAAGCTATCATGTTAGATTGA

mRNA sequence

ATGGTGATCGAGAAAACAAGAAAACAAATGAAACCAATCAACAGGGCTGGGCAACACCAAGAAATCGACGAAGATCAAGTTAATGCGGGAACAGTCTGGCTGGAGAAATGTGACCTGAAATTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAACCGGAAAGGACCGAGAACGAAGCTATCATGTTAGATTGA

Coding sequence (CDS)

ATGGTGATCGAGAAAACAAGAAAACAAATGAAACCAATCAACAGGGCTGGGCAACACCAAGAAATCGACGAAGATCAAGTTAATGCGGGAACAGTCTGGCTGGAGAAATGTGACCTGAAATTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAACCGGAAAGGACCGAGAACGAAGCTATCATGTTAGATTGA

Protein sequence

MVIEKTRKQMKPINRAGQHQEIDEDQVNAGTVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD

Homology

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BLAST of MELO3C007102.2 vs. NCBI nr
Match: KGN49433.1 (hypothetical protein Csa_6G524700 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-21
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 10 MKPINRAGQHQEIDEDQVNAG-TVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 68
          MKPINRAGQHQ I EDQVNAG TVW+EKCDLKFRLNTQMEGPININE ERTENEAIMLD
Sbjct: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

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BLAST of MELO3C007102.2 vs. TrEMBL
Match: tr|A0A0A0KIR4|A0A0A0KIR4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.5e-21
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 10 MKPINRAGQHQEIDEDQVNAG-TVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 68
          MKPINRAGQHQ I EDQVNAG TVW+EKCDLKFRLNTQMEGPININE ERTENEAIMLD
Sbjct: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

The following BLAST results are available for this feature:

BLAST of MELO3C007102.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49433.1	3.7e-21	91.53	hypothetical protein Csa_6G524700 [Cucumis sativus]	[more]

BLAST of MELO3C007102.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C007102.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C007102.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIR4\|A0A0A0KIR4_CUCSA	2.5e-21	91.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007102.2.1	MELO3C007102.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007102.2	Csa6G524700	Cucumber (Chinese Long) v2	cumedB486
MELO3C007102.2	CSPI06G36610	Wild cucumber (PI 183967)	cpimedB496
MELO3C007102.2	ClCG01G024930	Watermelon (Charleston Gray)	medwcgB510
MELO3C007102.2	Bhi03G000112	Wax gourd	medwgoB657
MELO3C007102.2	CsaV3_6G052090	Cucumber (Chinese Long) v3	cucmedB508

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007102.2	Cucumber (Gy14) v2	cgybmedB442
MELO3C007102.2	Cucurbita maxima (Rimu)	cmamedB233
MELO3C007102.2	Cucumber (Gy14) v1	cgymedB025
MELO3C007102.2	Cucurbita maxima (Rimu)	cmamedB704
MELO3C007102.2	Cucurbita maxima (Rimu)	cmamedB897
MELO3C007102.2	Cucurbita moschata (Rifu)	cmomedB217
MELO3C007102.2	Cucurbita moschata (Rifu)	cmomedB695
MELO3C007102.2	Cucurbita moschata (Rifu)	cmomedB886
MELO3C007102.2	Cucurbita pepo (Zucchini)	cpemedB081
MELO3C007102.2	Cucurbita pepo (Zucchini)	cpemedB540
MELO3C007102.2	Cucurbita pepo (Zucchini)	cpemedB572
MELO3C007102.2	Bottle gourd (USVL1VR-Ls)	lsimedB156
MELO3C007102.2	Bottle gourd (USVL1VR-Ls)	lsimedB239
MELO3C007102.2	Watermelon (Charleston Gray)	medwcgB518
MELO3C007102.2	Watermelon (97103) v1	medwmB549
MELO3C007102.2	Watermelon (97103) v1	medwmB561
MELO3C007102.2	Silver-seed gourd	carmedB0312
MELO3C007102.2	Silver-seed gourd	carmedB0736
MELO3C007102.2	Watermelon (97103) v2	medwmbB507