MELO3C007096.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C007096.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionF-box protein SKIP19
Locationchr08 : 774343 .. 775048 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGACTATGACTTCACAAAGGAGGGATTGAGTGTAGCAGTTTCGAAACTTCCATTGTTGGAGCATCTTGAAATTGAATCATTTATTATTGTACTTGATCCGGAAACTTTGAGAACTATTGGACGATGTGGCCCTTTATTAAAATCGCTGAAACTGAAAGATTTATGTCATATGTTAGGATTATTTATTTCTTCTGATGAAGACGCACTTGCTATTGCTCAAACTATGCCCAAGTTACATCACCTTGAAATTGTGGGCAATCGCATTACTAACTTTGGTTTGCATGCCCTTCTTGATAGTTGTTCTGATTTACAATCTCTTGACTTACGCAAGTGTAGATATTTAGATTTTGAGGAACGCTTGAAGAAGAAATGTTCTGAAAGGATCAAAACTTTGCGTCTGCCGGCTGACGAACCTGTTAACGGAAGTACCTTCCAATGGTTAACCTCCGGTTTCCCCTACAATTTGCCATTCCCATGATTTCTCTTATCTCAGATTTTTATCTCGATGATGATCTTGGTATGTTTTATTTTTAGAATTGGGGCATTTTTTGTGGTTGATGCGATGAAGTTATTTTGTTAGAAAGGTCGAAACTGGGATAGTTTTGTTAGCTTTGAGTGCTATGTAGTCGAGAATTATTAATATTGATGTGTGCACATCAGGATCAGCAAAAACTCTAAACTCTAATGGTAAAAAGTGGTTA

mRNA sequence

ATGGGAGACTATGACTTCACAAAGGAGGGATTGAGTGTAGCAGTTTCGAAACTTCCATTGTTGGAGCATCTTGAAATTGAATCATTTATTATTGTACTTGATCCGGAAACTTTGAGAACTATTGGACGATGTGGCCCTTTATTAAAATCGCTGAAACTGAAAGATTTATGTCATATGTTAGGATTATTTATTTCTTCTGATGAAGACGCACTTGCTATTGCTCAAACTATGCCCAAGTTACATCACCTTGAAATTGTGGGCAATCGCATTACTAACTTTGGTTTGCATGCCCTTCTTGATAGTTGTTCTGATTTACAATCTCTTGACTTACGCAAGTGTAGATATTTAGATTTTGAGGAACGCTTGAAGAAGAAATGTTCTGAAAGGATCAAAACTTTGCGTCTGCCGGCTGACGAACCTGTTAACGGAAGTACCTTCCAATGGTTAACCTCCGGTTTCCCCTACAATTTGCCATTCCCATGATTTCTCTTATCTCAGATTTTTATCTCGATGATGATCTTGGTATGTTTTATTTTTAGAATTGGGGCATTTTTTGTGGTTGATGCGATGAAGTTATTTTGTTAGAAAGGTCGAAACTGGGATAGTTTTGTTAGCTTTGAGTGCTATGTAGTCGAGAATTATTAATATTGATGTGTGCACATCAGGATCAGCAAAAACTCTAAACTCTAATGGTAAAAAGTGGTTA

Coding sequence (CDS)

ATGGGAGACTATGACTTCACAAAGGAGGGATTGAGTGTAGCAGTTTCGAAACTTCCATTGTTGGAGCATCTTGAAATTGAATCATTTATTATTGTACTTGATCCGGAAACTTTGAGAACTATTGGACGATGTGGCCCTTTATTAAAATCGCTGAAACTGAAAGATTTATGTCATATGTTAGGATTATTTATTTCTTCTGATGAAGACGCACTTGCTATTGCTCAAACTATGCCCAAGTTACATCACCTTGAAATTGTGGGCAATCGCATTACTAACTTTGGTTTGCATGCCCTTCTTGATAGTTGTTCTGATTTACAATCTCTTGACTTACGCAAGTGTAGATATTTAGATTTTGAGGAACGCTTGAAGAAGAAATGTTCTGAAAGGATCAAAACTTTGCGTCTGCCGGCTGACGAACCTGTTAACGGAAGTACCTTCCAATGGTTAACCTCCGGTTTCCCCTACAATTTGCCATTCCCATGA

Protein sequence

MGDYDFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP
Homology
[Close]
BLAST of MELO3C007096.2 vs. NCBI nr
Match: XP_011658525.1 (PREDICTED: putative F-box/LRR-repeat protein 23 [Cucumis sativus] >KGN49440.1 hypothetical protein Csa_6G525270 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 129/155 (83.23%), Postives = 138/155 (89.03%), Query Frame = 0 

Query: 6   FTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFIS 65
           FTKE L VAVS+LPLLEHLEI+SFII LDPETLRTIGRC  LLKSLKLK+LC+ +G   S
Sbjct: 121 FTKEVLGVAVSELPLLEHLEIQSFIIGLDPETLRTIGRCCHLLKSLKLKELCY-IGFISS 180

Query: 66  SDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKK 125
           SDEDALAIA+TMP LHHLEIVGN ITNFGLHALLDSCS LQSLDLRKC YLDF+E LKKK
Sbjct: 181 SDEDALAIAETMPNLHHLEIVGNSITNFGLHALLDSCSGLQSLDLRKCMYLDFDEHLKKK 240

Query: 126 CSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 161
           C +RIKTLRLP  EPV+GSTFQWLTSGFPYNLPFP
Sbjct: 241 CYQRIKTLRLPY-EPVDGSTFQWLTSGFPYNLPFP 273

[Close]
BLAST of MELO3C007096.2 vs. NCBI nr
Match: XP_008439579.1 (PREDICTED: putative F-box/LRR-repeat protein 9 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 0 

Query: 10  GLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKL-KDLCHMLGLFISSDE 69
           GL  AVSKLPLLE LEI  F+   D +TL T+G C PLLKSLKL +  C   G+    D 
Sbjct: 119 GLIKAVSKLPLLEQLEI--FLCCFDAKTLGTVGMCCPLLKSLKLNQQFCTGKGMV--CDR 178

Query: 70  DALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKCSE 129
           +A+AIA+TMPKL HL+I+GN +++ GL A+LD C+DL+SLDLR+C  L FE +L K C E
Sbjct: 179 EAIAIAKTMPKLRHLQILGNALSDKGLQAILDGCTDLESLDLRQCFNLKFEGQLGKVCVE 238

Query: 130 RIKTLRLPAD 139
           +IKTL +P D
Sbjct: 239 KIKTLHMPHD 244

[Close]
BLAST of MELO3C007096.2 vs. NCBI nr
Match: XP_022925897.1 (F-box protein SKIP19-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 129.8 bits (325), Expect = 8.3e-27
Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = 0 

Query: 9   EGLSVAVSKLPLLEHLEIE--SFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 68
           EGL  AVSKLPLLE LEI   SF    D ETL T+G+C PLLKSLKL    +     +  
Sbjct: 131 EGLIKAVSKLPLLEDLEISFGSF----DVETLETLGQCRPLLKSLKLNRQFYRR---VEC 190

Query: 69  DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKC 128
           D+ ALAIA+ MP L HL+I GN +TN GL A+LD C DL+SLDLR+C  L+   +L  KC
Sbjct: 191 DKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNLNLAGQLGAKC 250

Query: 129 SERIKTLRLPAD 139
           SE+IK LRLP D
Sbjct: 251 SEKIKNLRLPHD 255

[Close]
BLAST of MELO3C007096.2 vs. NCBI nr
Match: XP_022925898.1 (F-box protein SKIP19-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 129.8 bits (325), Expect = 8.3e-27
Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = 0 

Query: 9   EGLSVAVSKLPLLEHLEIE--SFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 68
           EGL  AVSKLPLLE LEI   SF    D ETL T+G+C PLLKSLKL    +     +  
Sbjct: 131 EGLIKAVSKLPLLEDLEISFGSF----DVETLETLGQCRPLLKSLKLNRQFYRR---VEC 190

Query: 69  DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKC 128
           D+ ALAIA+ MP L HL+I GN +TN GL A+LD C DL+SLDLR+C  L+   +L  KC
Sbjct: 191 DKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNLNLAGQLGAKC 250

Query: 129 SERIKTLRLPAD 139
           SE+IK LRLP D
Sbjct: 251 SEKIKNLRLPHD 255

[Close]
BLAST of MELO3C007096.2 vs. NCBI nr
Match: XP_023543623.1 (F-box protein SKIP19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 8.3e-27
Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = 0 

Query: 9   EGLSVAVSKLPLLEHLEIE--SFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 68
           EGL  AVSKLPLLE LEI   SF    D ETL T+G+C PLLKSLKL    +     +  
Sbjct: 131 EGLIKAVSKLPLLEDLEISFGSF----DVETLETLGQCRPLLKSLKLNRQFYRR---VEC 190

Query: 69  DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKC 128
           D+ ALAIA+ MP L HL+I GN +TN GL A+LD C DL+SLDLR+C  L+   +L  KC
Sbjct: 191 DKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNLNLAGQLGAKC 250

Query: 129 SERIKTLRLPAD 139
           SE+IK LRLP D
Sbjct: 251 SEKIKNLRLPHD 255

[Close]
BLAST of MELO3C007096.2 vs. TAIR10
Match: AT4G05470.1 (RNI-like superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 2.9e-26
Identity = 68/163 (41.72%), Postives = 93/163 (57.06%), Query Frame = 0 

Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF--- 66
           TK G+  A++K+PLLE LE+    I LD   L+ IG   P LK+LKL  L  +       
Sbjct: 153 TKLGVVNAIAKIPLLETLEVTHSCIKLD---LKAIGHACPQLKTLKLNSLGRLWPASDKY 212

Query: 67  ----------ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKC 126
                     +  D+DALAIA++MPKLHHL+++ NR+TN GL+A+LD C  L+ LD+RKC
Sbjct: 213 DSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKC 272

Query: 127 RYLDFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYN 157
             +     L+K+C E IK LR P D           T+ +PYN
Sbjct: 273 FRISLVGNLEKRCLEMIKELRRPGDS----------TADYPYN 302

[Close]
BLAST of MELO3C007096.2 vs. TAIR10
Match: AT4G05475.1 (RNI-like superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-23
Identity = 68/161 (42.24%), Postives = 93/161 (57.76%), Query Frame = 0 

Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 66
           T +G+   + KLPLLE L I    I LD   L+ IG   P LK+LKL  L   L   IS 
Sbjct: 147 TNKGVMNGIEKLPLLETLVIFHSSIKLD---LKAIGHACPQLKTLKLNSLGSELAHDISQ 206

Query: 67  ---------DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQS-LDLRKCRYL 126
                    D+DALAIA++MPKL HL+++GN +TN GL+A+LD C  L+  LD+RKC  +
Sbjct: 207 VGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNI 266

Query: 127 DFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNL 158
           +    L+K+C +RIK LR P D           T+ +PY++
Sbjct: 267 NLVGNLEKRCMKRIKELRRPHDS----------TADYPYSI 294

[Close]
BLAST of MELO3C007096.2 vs. TAIR10
Match: AT4G05490.1 (RNI-like superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-23
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 0 

Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 66
           T  G+  A+ KLPLLE LE+      ++ E  +TIG+  P LK+LKL      L     S
Sbjct: 137 TSVGIFEAIVKLPLLEELEL--LYCSIEEEHFKTIGQACPNLKTLKLVGFWSHLN---ES 196

Query: 67  DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKC 126
           D DALAIA TMP L HL+++ N +TN GL+A+LD C  L+ LDLR+C  ++    L+++C
Sbjct: 197 DNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQC 256

Query: 127 SERIKTLRLPAD 139
            ERIK  R P D
Sbjct: 257 LERIKDFRCPND 263

[Close]
BLAST of MELO3C007096.2 vs. TAIR10
Match: AT5G52480.1 (RNI-like superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-22
Identity = 64/154 (41.56%), Postives = 92/154 (59.74%), Query Frame = 0 

Query: 5   DFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFI 64
           + T +G   AV KLP+LE LE+    I L  E+++  G   P LK+L L  L      ++
Sbjct: 63  EITDDGFVQAVVKLPMLEELEVSG--ISLSGESMKLAGLSCPNLKTLMLNRL-----FYL 122

Query: 65  SSDE---DALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEER 124
           SSD+   DA+AIA++MPKL HL++ GN++T  GL+A+LD C  L+ LDLR+C  ++    
Sbjct: 123 SSDDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC--INLVGN 182

Query: 125 LKKKCSERIKTLR-----LPADEPVNGST--FQW 149
           L+K+C E+IK LR       AD P +  T  F W
Sbjct: 183 LEKRCFEKIKDLRRHNDSTSADYPFSFETYYFHW 207

[Close]
BLAST of MELO3C007096.2 vs. TAIR10
Match: AT4G05460.1 (RNI-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 7.5e-22
Identity = 59/134 (44.03%), Postives = 87/134 (64.93%), Query Frame = 0 

Query: 7   TKEGLSVAVSKLPLLEHLEIE--SFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFI 66
           T +G   AV KLP LE LE+   SF +    E+LR +G+C   +K+LKL           
Sbjct: 129 TDDGFVEAVVKLP-LEELELSYCSFSV----ESLRVVGQCCLNMKTLKLNKHPQK----- 188

Query: 67  SSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKK 126
            +D+DALAIA+TMPKL HL++ GN +++ GL+A+LD+CS+L+ LDLR+C  ++    L+K
Sbjct: 189 ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQK 248

Query: 127 KCSERIKTLRLPAD 139
           +C E +K +R P D
Sbjct: 249 RCFESVKVVRHPND 252

[Close]
BLAST of MELO3C007096.2 vs. Swiss-Prot
Match: sp|Q9S9V9|FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 63/135 (46.67%), Postives = 90/135 (66.67%), Query Frame = 0 

Query: 4   YDFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF 63
           +  T EG++ AVSK+PLLE+LE+     +   E+LR IGR  P LK+LKL     ++   
Sbjct: 288 FPITDEGVAKAVSKVPLLEYLEVS--YCLFSGESLRDIGRSCPNLKTLKLNRAPEIMFSN 347

Query: 64  ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLK 123
              D++A AIA++MP+L HL+++GN +TN GL+A+LD C  L+ LDLR+C  ++    LK
Sbjct: 348 SGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLK 407

Query: 124 KKCSERIKTLRLPAD 139
           K+C ERIK LR P D
Sbjct: 408 KRCFERIKDLRCPND 420

[Close]
BLAST of MELO3C007096.2 vs. Swiss-Prot
Match: sp|Q9M0U8|FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.3e-25
Identity = 68/163 (41.72%), Postives = 93/163 (57.06%), Query Frame = 0 

Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF--- 66
           TK G+  A++K+PLLE LE+    I LD   L+ IG   P LK+LKL  L  +       
Sbjct: 153 TKLGVVNAIAKIPLLETLEVTHSCIKLD---LKAIGHACPQLKTLKLNSLGRLWPASDKY 212

Query: 67  ----------ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKC 126
                     +  D+DALAIA++MPKLHHL+++ NR+TN GL+A+LD C  L+ LD+RKC
Sbjct: 213 DSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKC 272

Query: 127 RYLDFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYN 157
             +     L+K+C E IK LR P D           T+ +PYN
Sbjct: 273 FRISLVGNLEKRCLEMIKELRRPGDS----------TADYPYN 302

[Close]
BLAST of MELO3C007096.2 vs. Swiss-Prot
Match: sp|Q9M0U7|FB221_ARATH (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-22
Identity = 68/161 (42.24%), Postives = 93/161 (57.76%), Query Frame = 0 

Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 66
           T +G+   + KLPLLE L I    I LD   L+ IG   P LK+LKL  L   L   IS 
Sbjct: 147 TNKGVMNGIEKLPLLETLVIFHSSIKLD---LKAIGHACPQLKTLKLNSLGSELAHDISQ 206

Query: 67  ---------DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQS-LDLRKCRYL 126
                    D+DALAIA++MPKL HL+++GN +TN GL+A+LD C  L+  LD+RKC  +
Sbjct: 207 VGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNI 266

Query: 127 DFEERLKKKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNL 158
           +    L+K+C +RIK LR P D           T+ +PY++
Sbjct: 267 NLVGNLEKRCMKRIKELRRPHDS----------TADYPYSI 294

[Close]
BLAST of MELO3C007096.2 vs. Swiss-Prot
Match: sp|Q9M0U6|FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.5e-22
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 0 

Query: 7   TKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFISS 66
           T  G+  A+ KLPLLE LE+      ++ E  +TIG+  P LK+LKL      L     S
Sbjct: 137 TSVGIFEAIVKLPLLEELEL--LYCSIEEEHFKTIGQACPNLKTLKLVGFWSHLN---ES 196

Query: 67  DEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKC 126
           D DALAIA TMP L HL+++ N +TN GL+A+LD C  L+ LDLR+C  ++    L+++C
Sbjct: 197 DNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQC 256

Query: 127 SERIKTLRLPAD 139
            ERIK  R P D
Sbjct: 257 LERIKDFRCPND 263

[Close]
BLAST of MELO3C007096.2 vs. Swiss-Prot
Match: sp|Q9M0U9|SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-20
Identity = 59/134 (44.03%), Postives = 87/134 (64.93%), Query Frame = 0 

Query: 7   TKEGLSVAVSKLPLLEHLEIE--SFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFI 66
           T +G   AV KLP LE LE+   SF +    E+LR +G+C   +K+LKL           
Sbjct: 129 TDDGFVEAVVKLP-LEELELSYCSFSV----ESLRVVGQCCLNMKTLKLNKHPQK----- 188

Query: 67  SSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKK 126
            +D+DALAIA+TMPKL HL++ GN +++ GL+A+LD+CS+L+ LDLR+C  ++    L+K
Sbjct: 189 ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQK 248

Query: 127 KCSERIKTLRLPAD 139
           +C E +K +R P D
Sbjct: 249 RCFESVKVVRHPND 252

[Close]
BLAST of MELO3C007096.2 vs. TrEMBL
Match: tr|A0A0A0KI84|A0A0A0KI84_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525270 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.5e-64
Identity = 129/155 (83.23%), Postives = 138/155 (89.03%), Query Frame = 0 

Query: 6   FTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLFIS 65
           FTKE L VAVS+LPLLEHLEI+SFII LDPETLRTIGRC  LLKSLKLK+LC+ +G   S
Sbjct: 121 FTKEVLGVAVSELPLLEHLEIQSFIIGLDPETLRTIGRCCHLLKSLKLKELCY-IGFISS 180

Query: 66  SDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKK 125
           SDEDALAIA+TMP LHHLEIVGN ITNFGLHALLDSCS LQSLDLRKC YLDF+E LKKK
Sbjct: 181 SDEDALAIAETMPNLHHLEIVGNSITNFGLHALLDSCSGLQSLDLRKCMYLDFDEHLKKK 240

Query: 126 CSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 161
           C +RIKTLRLP  EPV+GSTFQWLTSGFPYNLPFP
Sbjct: 241 CYQRIKTLRLPY-EPVDGSTFQWLTSGFPYNLPFP 273

[Close]
BLAST of MELO3C007096.2 vs. TrEMBL
Match: tr|A0A1S3AZR6|A0A1S3AZR6_CUCME (putative F-box/LRR-repeat protein 9 OS=Cucumis melo OX=3656 GN=LOC103484332 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 0 

Query: 10  GLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKL-KDLCHMLGLFISSDE 69
           GL  AVSKLPLLE LEI  F+   D +TL T+G C PLLKSLKL +  C   G+    D 
Sbjct: 119 GLIKAVSKLPLLEQLEI--FLCCFDAKTLGTVGMCCPLLKSLKLNQQFCTGKGMV--CDR 178

Query: 70  DALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKCSE 129
           +A+AIA+TMPKL HL+I+GN +++ GL A+LD C+DL+SLDLR+C  L FE +L K C E
Sbjct: 179 EAIAIAKTMPKLRHLQILGNALSDKGLQAILDGCTDLESLDLRQCFNLKFEGQLGKVCVE 238

Query: 130 RIKTLRLPAD 139
           +IKTL +P D
Sbjct: 239 KIKTLHMPHD 244

[Close]
BLAST of MELO3C007096.2 vs. TrEMBL
Match: tr|A0A2P2JMC0|A0A2P2JMC0_RHIMU (Uncharacterized protein MANES_14G135100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 74/157 (47.13%), Postives = 97/157 (61.78%), Query Frame = 0 

Query: 4   YDFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF 63
           Y  T +GLS   +K PLLE LEI      L  E+L  +GRC PLL++LKL    + L   
Sbjct: 142 YSITDDGLSGLAAKAPLLEELEIS--YCSLSKESLEVVGRCCPLLRTLKLNCQGYKLP-H 201

Query: 64  ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLK 123
           I  DE+ALAIA+TMP LHHL+I GN++TN G+ A+LD C  L+SLDLR+C  ++ E    
Sbjct: 202 IECDEEALAIARTMPGLHHLQIFGNKLTNDGVQAILDGCPHLESLDLRQCFNVNLEGNFG 261

Query: 124 KKCSERIKTLRLPADEPVNGSTFQWLTSGFPYNLPFP 161
           K+CSERIK LR P D           T+ +P++L  P
Sbjct: 262 KRCSERIKDLRRPDDS----------TNDYPFDLEIP 285

[Close]
BLAST of MELO3C007096.2 vs. TrEMBL
Match: tr|A0A1R3JC55|A0A1R3JC55_9ROSI (Eukaryotic translation initiation factor 3 subunit B OS=Corchorus olitorius OX=93759 GN=COLO4_17667 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.2e-27
Identity = 69/135 (51.11%), Postives = 90/135 (66.67%), Query Frame = 0 

Query: 4   YDFTKEGLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKLKDLCHMLGLF 63
           YD + EGLS AVSKLPLLE LEI  ++     + +  + RC PLLK+LK      +    
Sbjct: 759 YDISNEGLSEAVSKLPLLEELEI--YVSHTYKDAIEAVVRCCPLLKTLKYNQQ-GIRDAS 818

Query: 64  ISSDEDALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLK 123
              DE+ALAIAQ MP LHHL ++GNR+TN GL A+LD C  L+SLDLRKC +++ E  L 
Sbjct: 819 YRDDEEALAIAQNMPGLHHLRLIGNRLTNHGLQAILDGCPHLESLDLRKCFHVNLEGDLG 878

Query: 124 KKCSERIKTLRLPAD 139
           K+C+++IK LR P D
Sbjct: 879 KRCAQQIKNLRRPND 890

[Close]
BLAST of MELO3C007096.2 vs. TrEMBL
Match: tr|A0A0A0KM43|A0A0A0KM43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525290 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.5e-26
Identity = 73/130 (56.15%), Postives = 86/130 (66.15%), Query Frame = 0 

Query: 10  GLSVAVSKLPLLEHLEIESFIIVLDPETLRTIGRCGPLLKSLKL-KDLCHMLGLFISSDE 69
           GL  A SKLPLLE LEI  F+   D  TL T+GRC PLLKSLKL +  C   G  +  D 
Sbjct: 119 GLIKAASKLPLLEQLEI--FLCCFDSRTLGTVGRCCPLLKSLKLNQQFC--TGKGMECDR 178

Query: 70  DALAIAQTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKCRYLDFEERLKKKCSE 129
           +ALAIA+TMPKL HL+I GN +T+ GL A+L+ C DL+SLDLR C  L FE  L   C+E
Sbjct: 179 EALAIAKTMPKLRHLQIFGNALTDKGLQAILNGCPDLESLDLRHCFNLKFEGELGNMCAE 238

Query: 130 RIKTLRLPAD 139
            IK L LP D
Sbjct: 239 NIKILHLPHD 244

The following BLAST results are available for this feature:
BLAST of MELO3C007096.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658525.13.8e-6483.23PREDICTED: putative F-box/LRR-repeat protein 23 [Cucumis sativus] >KGN49440.1 hy... [more]
XP_008439579.12.2e-2756.15PREDICTED: putative F-box/LRR-repeat protein 9 [Cucumis melo][more]
XP_022925897.18.3e-2756.82F-box protein SKIP19-like isoform X1 [Cucurbita moschata][more]
XP_022925898.18.3e-2756.82F-box protein SKIP19-like isoform X2 [Cucurbita moschata][more]
XP_023543623.18.3e-2756.82F-box protein SKIP19-like [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C007096.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G05470.12.9e-2641.72RNI-like superfamily protein[more]
AT4G05475.11.0e-2342.24RNI-like superfamily protein[more]
AT4G05490.13.0e-2345.45RNI-like superfamily protein[more]
AT5G52480.12.0e-2241.56RNI-like superfamily protein[more]
AT4G05460.17.5e-2244.03RNI-like superfamily protein[more]
BLAST of MELO3C007096.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9S9V9|FBL23_ARATH1.8e-2546.67Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE... [more]
sp|Q9M0U8|FBL21_ARATH5.3e-2541.72Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE... [more]
sp|Q9M0U7|FB221_ARATH1.9e-2242.24Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE... [more]
sp|Q9M0U6|FBL22_ARATH5.5e-2245.45Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE... [more]
sp|Q9M0U9|SKI19_ARATH1.3e-2044.03F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1[more]
BLAST of MELO3C007096.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KI84|A0A0A0KI84_CUCSA2.5e-6483.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525270 PE=4 SV=1[more]
tr|A0A1S3AZR6|A0A1S3AZR6_CUCME1.4e-2756.15putative F-box/LRR-repeat protein 9 OS=Cucumis melo OX=3656 GN=LOC103484332 PE=4... [more]
tr|A0A2P2JMC0|A0A2P2JMC0_RHIMU2.5e-2747.13Uncharacterized protein MANES_14G135100 OS=Rhizophora mucronata OX=61149 PE=4 SV... [more]
tr|A0A1R3JC55|A0A1R3JC55_9ROSI7.2e-2751.11Eukaryotic translation initiation factor 3 subunit B OS=Corchorus olitorius OX=9... [more]
tr|A0A0A0KM43|A0A0A0KM43_CUCSA3.5e-2656.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525290 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007096.2.1MELO3C007096.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3DG3DSA:3.80.10.10coord: 2..144
e-value: 5.9E-19
score: 69.7
NoneNo IPR availablePANTHERPTHR44078:SF5F-BOX PROTEIN SKIP19-RELATEDcoord: 5..139
NoneNo IPR availablePANTHERPTHR44078FAMILY NOT NAMEDcoord: 5..139
NoneNo IPR availableSUPERFAMILYSSF52047RNI-likecoord: 14..116

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C007096.2Bhi03G000122Wax gourdmedwgoB657
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C007096.2Silver-seed gourdcarmedB0312
MELO3C007096.2Silver-seed gourdcarmedB0736
MELO3C007096.2Cucumber (Chinese Long) v3cucmedB508
MELO3C007096.2Watermelon (97103) v2medwmbB507
MELO3C007096.2Cucumber (Gy14) v2cgybmedB442
MELO3C007096.2Cucurbita maxima (Rimu)cmamedB233
MELO3C007096.2Cucumber (Gy14) v1cgymedB025
MELO3C007096.2Cucurbita maxima (Rimu)cmamedB704
MELO3C007096.2Cucurbita maxima (Rimu)cmamedB897
MELO3C007096.2Cucurbita moschata (Rifu)cmomedB217
MELO3C007096.2Cucurbita moschata (Rifu)cmomedB695
MELO3C007096.2Cucurbita moschata (Rifu)cmomedB886
MELO3C007096.2Cucurbita pepo (Zucchini)cpemedB081
MELO3C007096.2Cucurbita pepo (Zucchini)cpemedB540
MELO3C007096.2Cucurbita pepo (Zucchini)cpemedB572
MELO3C007096.2Wild cucumber (PI 183967)cpimedB496
MELO3C007096.2Cucumber (Chinese Long) v2cumedB486
MELO3C007096.2Bottle gourd (USVL1VR-Ls)lsimedB156
MELO3C007096.2Bottle gourd (USVL1VR-Ls)lsimedB239
MELO3C007096.2Watermelon (Charleston Gray)medwcgB510
MELO3C007096.2Watermelon (Charleston Gray)medwcgB518
MELO3C007096.2Watermelon (97103) v1medwmB549
MELO3C007096.2Watermelon (97103) v1medwmB561