MELO3C007017 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007017
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	MADS-box transcription factor
Location	chr8 : 215217 .. 215411 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGAAAAATCGCAATCAGGAGAATAGAGAATCGGACGACAAGGCAAGTTACATTCTCGAAGCGGAGAGGCGGTCTGTTCAAGAAGACCCATGAACTTTCTGTTTTATGTGATGCTCAGATCGCTCTCATCGTCTTCTCCAGCAACGGCAAATTGTTCGAATACTGTACTCAAACAACATGGTATTAA

mRNA sequence

ATGGGAAGAGGAAAAATCGCAATCAGGAGAATAGAGAATCGGACGACAAGGCAAGTTACATTCTCGAAGCGGAGAGGCGGTCTGTTCAAGAAGACCCATGAACTTTCTGTTTTATGTGATGCTCAGATCGCTCTCATCGTCTTCTCCAGCAACGGCAAATTGTTCGAATACTGTACTCAAACAACATGGTATTAA

Coding sequence (CDS)

ATGGGAAGAGGAAAAATCGCAATCAGGAGAATAGAGAATCGGACGACAAGGCAAGTTACATTCTCGAAGCGGAGAGGCGGTCTGTTCAAGAAGACCCATGAACTTTCTGTTTTATGTGATGCTCAGATCGCTCTCATCGTCTTCTCCAGCAACGGCAAATTGTTCGAATACTGTACTCAAACAACATGGTATTAA

Protein sequence

MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQTTWY*

Homology

[Close]

BLAST of MELO3C007017 vs. Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-22
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKI ++RIEN+T+RQVTFSKRR GL KKTHELSVLCDAQI LI+FSS GKLFEYC+Q
Sbjct: 4  MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

[Close]

BLAST of MELO3C007017 vs. Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.0e-21
Identity = 48/59 (81.36%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCT 60
          MGRGKI ++RIEN T+RQVTFSKRR GL KKTHELSVLCDAQI LIVFS+ GKL EYCT
Sbjct: 1  MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCT 59

[Close]

BLAST of MELO3C007017 vs. Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.6e-20
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKI I+RIEN T RQVTFSKRRGGL KK HELSVLCDA++ LI+FSS+GKLFEY + 
Sbjct: 1  MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61 TT 63
          ++
Sbjct: 61 SS 62

[Close]

BLAST of MELO3C007017 vs. Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-19
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKI I+RIEN T RQVTFSKRRGGL KK +EL+VLCDA++ +++FSS GK+FEYC+ 
Sbjct: 1  MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]

BLAST of MELO3C007017 vs. Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.9e-19
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRG++ ++RIEN+  RQVTFSKRR GL KK HE+SVLCDA++ALIVFSS GKLFEY T 
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query: 61 T 62
          +
Sbjct: 61 S 61

[Close]

BLAST of MELO3C007017 vs. TrEMBL
Match: B9I4N6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14770g PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-21
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAI RIENRT RQVTFSKRRGGLFKKTHELSVLCDA+I LI+FSSNGKL+E+C +
Sbjct: 1  MGRGKIAITRIENRTARQVTFSKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCNE 60

Query: 61 TT 63
          ++
Sbjct: 61 SS 62

[Close]

BLAST of MELO3C007017 vs. TrEMBL
Match: B9HGK3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07620g PE=4 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-20
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAIRRIEN+TTRQVTFSKRR GL KKTHELSVLCDAQI LI+FSS GKL +YCT+
Sbjct: 1  MGRGKIAIRRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60

[Close]

BLAST of MELO3C007017 vs. TrEMBL
Match: A0A0D2TWH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G069000 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-20
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAI+RIEN+TTRQVTFSKRR GL KKTHELSVLCDAQI LI+FSS GK+ +YCTQ
Sbjct: 1  MGRGKIAIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCTQ 60

[Close]

BLAST of MELO3C007017 vs. TrEMBL
Match: A0A0D2W3J3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G069000 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-20
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAI+RIEN+TTRQVTFSKRR GL KKTHELSVLCDAQI LI+FSS GK+ +YCTQ
Sbjct: 1  MGRGKIAIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCTQ 60

[Close]

BLAST of MELO3C007017 vs. TrEMBL
Match: A0A0B0PPB3_GOSAR (Protein TRANSPARENT TESTA 16-like protein OS=Gossypium arboreum GN=F383_33609 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-20
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAI+RIEN+TTRQVTFSKRR GL KKTHELSVLCDAQI LI+FSS GK+ +YCTQ
Sbjct: 1  MGRGKIAIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCTQ 60

[Close]

BLAST of MELO3C007017 vs. TAIR10
Match: AT5G60910.1 (AT5G60910.1 AGAMOUS-like 8)

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-20
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRG++ ++RIEN+  RQVTFSKRR GL KK HE+SVLCDA++ALIVFSS GKLFEY T 
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query: 61 T 62
          +
Sbjct: 61 S 61

[Close]

BLAST of MELO3C007017 vs. TAIR10
Match: AT1G69120.1 (AT1G69120.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-19
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRG++ ++RIEN+  RQVTFSKRR GL KK HE+SVLCDA++AL+VFS  GKLFEY T 
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61 T 62
          +
Sbjct: 61 S 61

[Close]

BLAST of MELO3C007017 vs. TAIR10
Match: AT5G23260.2 (AT5G23260.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-19
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKI I++IEN+T RQVTFSKRR GL KKT ELS+LCDA I LIVFS+ GKL E+C++
Sbjct: 1  MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSE 60

[Close]

BLAST of MELO3C007017 vs. TAIR10
Match: AT1G24260.2 (AT1G24260.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-19
Identity = 38/62 (61.29%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRG++ ++RIEN+  RQVTF+KRR GL KK +ELSVLCDA++ALI+FS+ GKL+E+C+ 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 TT 63
          ++
Sbjct: 61 SS 62

[Close]

BLAST of MELO3C007017 vs. TAIR10
Match: AT2G22540.1 (AT2G22540.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-19
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          M R KI IR+I+N T RQVTFSKRR GLFKK  ELSVLCDA +ALI+FSS GKLFE+C+ 
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61 T 62
          +
Sbjct: 61 S 61

[Close]

BLAST of MELO3C007017 vs. NCBI nr
Match: gi|778721776|ref|XP_004134531.2| (PREDICTED: MADS-box protein FBP24 isoform X1 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ
Sbjct: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60

Query: 61 TT 63
          TT
Sbjct: 61 TT 62

[Close]

BLAST of MELO3C007017 vs. NCBI nr
Match: gi|659077936|ref|XP_008439462.1| (PREDICTED: MADS-box protein FBP24 isoform X1 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ
Sbjct: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60

Query: 61 TT 63
          TT
Sbjct: 61 TT 62

[Close]

BLAST of MELO3C007017 vs. NCBI nr
Match: gi|778721794|ref|XP_011658354.1| (PREDICTED: MADS-box protein FBP24 isoform X6 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ
Sbjct: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60

Query: 61 TT 63
          TT
Sbjct: 61 TT 62

[Close]

BLAST of MELO3C007017 vs. NCBI nr
Match: gi|659077944|ref|XP_008439466.1| (PREDICTED: MADS-box protein FBP24 isoform X5 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ
Sbjct: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60

Query: 61 TT 63
          TT
Sbjct: 61 TT 62

[Close]

BLAST of MELO3C007017 vs. NCBI nr
Match: gi|778721783|ref|XP_011658351.1| (PREDICTED: MADS-box protein FBP24 isoform X3 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60
          MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ
Sbjct: 1  MGRGKIAIRRIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCTQ 60

Query: 61 TT 63
          TT
Sbjct: 61 TT 62

The following BLAST results are available for this feature:

BLAST of MELO3C007017 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FBP24_PETHY	2.2e-22	81.67	MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1	[more]
DEF21_ANTMA	7.0e-21	81.36	MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1	[more]
GGM13_GNEGN	4.6e-20	74.19	MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1	[more]
MAD29_ORYSJ	1.3e-19	70.49	MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 ...	[more]
AGL8_ARATH	3.9e-19	70.49	Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1	[more]

BLAST of MELO3C007017 vs. TrEMBL


Match Name	E-value	Identity	Description
B9I4N6_POPTR	1.3e-21	82.26	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14770g PE=4 SV=1	[more]
B9HGK3_POPTR	1.4e-20	85.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07620g PE=4 SV=2	[more]
A0A0D2TWH7_GOSRA	2.4e-20	83.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G069000 PE=4 SV=1	[more]
A0A0D2W3J3_GOSRA	2.4e-20	83.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G069000 PE=4 SV=1	[more]
A0A0B0PPB3_GOSAR	2.4e-20	83.33	Protein TRANSPARENT TESTA 16-like protein OS=Gossypium arboreum GN=F383_33609 PE...	[more]

BLAST of MELO3C007017 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60910.1	2.2e-20	70.49	AGAMOUS-like 8	[more]
AT1G69120.1	1.1e-19	67.21	K-box region and MADS-box transcription factor family protein	[more]
AT5G23260.2	2.4e-19	71.67	K-box region and MADS-box transcription factor family protein	[more]
AT1G24260.2	4.1e-19	61.29	K-box region and MADS-box transcription factor family protein	[more]
AT2G22540.1	4.1e-19	70.49	K-box region and MADS-box transcription factor family protein	[more]

BLAST of MELO3C007017 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778721776\|ref\|XP_004134531.2\|	2.5e-26	100.00	PREDICTED: MADS-box protein FBP24 isoform X1 [Cucumis sativus]	[more]
gi\|659077936\|ref\|XP_008439462.1\|	2.5e-26	100.00	PREDICTED: MADS-box protein FBP24 isoform X1 [Cucumis melo]	[more]
gi\|778721794\|ref\|XP_011658354.1\|	2.5e-26	100.00	PREDICTED: MADS-box protein FBP24 isoform X6 [Cucumis sativus]	[more]
gi\|659077944\|ref\|XP_008439466.1\|	2.5e-26	100.00	PREDICTED: MADS-box protein FBP24 isoform X5 [Cucumis melo]	[more]
gi\|778721783\|ref\|XP_011658351.1\|	2.5e-26	100.00	PREDICTED: MADS-box protein FBP24 isoform X3 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:2000029	regulation of proanthocyanidin biosynthetic process
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0044702	single organism reproductive process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0048316	seed development
biological_process	GO:0080155	regulation of double fertilization forming a zygote and endosperm
biological_process	GO:0008360	regulation of cell shape
biological_process	GO:0048481	plant ovule development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007017T1	MELO3C007017T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 2.2E-29coord: 38..59 score: 2.2E-29coord: 3..23 score: 2.2
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 score: 9.4
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 1.5
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 31
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..61 score: 3.53
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..59 score: 3.4
None	No IPR available	PANTHER	PTHR11945:SF242	PROTEIN TRANSPARENT TESTA 16	coord: 2..59 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007017	Cla009883	Watermelon (97103) v1	mewmB572
MELO3C007017	ClCG01G025680	Watermelon (Charleston Gray)	mewcgB515
MELO3C007017	Cla97C01G025830	Watermelon (97103) v2	mewmbB515
MELO3C007017	Bhi03G000210	Wax gourd	mewgoB650
MELO3C007017	CSPI06G37450	Wild cucumber (PI 183967)	cpimeB512
MELO3C007017	CmaCh03G014930	Cucurbita maxima (Rimu)	cmameB618
MELO3C007017	CmaCh07G000200	Cucurbita maxima (Rimu)	cmameB798
MELO3C007017	CmoCh07G000240	Cucurbita moschata (Rifu)	cmomeB782
MELO3C007017	CmoCh03G014950	Cucurbita moschata (Rifu)	cmomeB606
MELO3C007017	Lsi01G000270	Bottle gourd (USVL1VR-Ls)	lsimeB149
MELO3C007017	Cp4.1LG10g06750	Cucurbita pepo (Zucchini)	cpemeB061
MELO3C007017	Cp4.1LG19g05350	Cucurbita pepo (Zucchini)	cpemeB457
MELO3C007017	CsGy6G036830	Cucumber (Gy14) v2	cgybmeB445
MELO3C007017	Carg24612	Silver-seed gourd	carmeB1040
MELO3C007017	Carg14933	Silver-seed gourd	carmeB0725
MELO3C007017	CsaV3_6G052910	Cucumber (Chinese Long) v3	cucmeB520

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007017	Cucumber (Chinese Long) v2	cumeB507
MELO3C007017	Cucumber (Gy14) v1	cgymeB027