MELO3C006932.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006932.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 7477445 .. 7477865 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTTATTGTTGTCGATGTCAAACCCAAGGTGCAAGCATTATCCAAGCAAGCCCATGTGAGTACATCAACTTGACATCTCGCTCTTACTCCTTGTCCGACAGTCGGACGTGGCACTCCGATCAAATCCCTCCACCAAGCATAAAGTAATCGCAAGTCCTCTCGTATCGCCAAGGACAAGCACGCCTAGACTATGCCAACAACAAGGTACAAGCATTATCCGACCAAGCCCATCCGAGTACATCAACTCGACATCCCGCTCTCACTCCCCACCGGACGATCGGACGTGGCACTCCAACGATGTCAACACCTCAAGCATATGTGCCCATGATAGGTGCAATGTGCTTGAAAGGTCGACGTCACGGCATAGGGGTACCTCCGCGCCCCGCCCATGCAGGCAGATCGCCCCTCCTATATAG

mRNA sequence

ATGACTTTTATTGTTGTCGATGTCAAACCCAAGGTGCAAGCATTATCCAAGCAAGCCCATTCGGACGTGGCACTCCGATCAAATCCCTCCACCAAGCATAAAGTAATCGCAAGTCCTCTCGTATCGCCAAGGACAAGCACGCCTAGACTATGCCAACAACAAGGTACAAGCATTATCCGACCAAGCCCATCCGAGTACATCAACTCGACATCCCGCTCTCACTCCCCACCGGACGATCGGACGTGGCACTCCAACGATGTCAACACCTCAAGCATATGTGCCCATGATAGGTGCAATGTGCTTGAAAGGTCGACGTCACGGCATAGGGGTACCTCCGCGCCCCGCCCATGCAGGCAGATCGCCCCTCCTATATAG

Coding sequence (CDS)

ATGACTTTTATTGTTGTCGATGTCAAACCCAAGGTGCAAGCATTATCCAAGCAAGCCCATTCGGACGTGGCACTCCGATCAAATCCCTCCACCAAGCATAAAGTAATCGCAAGTCCTCTCGTATCGCCAAGGACAAGCACGCCTAGACTATGCCAACAACAAGGTACAAGCATTATCCGACCAAGCCCATCCGAGTACATCAACTCGACATCCCGCTCTCACTCCCCACCGGACGATCGGACGTGGCACTCCAACGATGTCAACACCTCAAGCATATGTGCCCATGATAGGTGCAATGTGCTTGAAAGGTCGACGTCACGGCATAGGGGTACCTCCGCGCCCCGCCCATGCAGGCAGATCGCCCCTCCTATATAG

Protein sequence

MTFIVVDVKPKVQALSKQAHSDVALRSNPSTKHKVIASPLVSPRTSTPRLCQQQGTSIIRPSPSEYINSTSRSHSPPDDRTWHSNDVNTSSICAHDRCNVLERSTSRHRGTSAPRPCRQIAPPI

Homology

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BLAST of MELO3C006932.2 vs. NCBI nr
Match: WP_061496626.1 (hypothetical protein [Legionella pneumophila])

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 45/96 (46.88%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 7   DVKPKVQALSKQAHSDVA-----------------LRSNPSTKHKVIASPLVSPRTSTPR 66
           D   KVQA SKQ H   +                  R NPSTK + I   LVS RTS P+
Sbjct: 59  DAHNKVQASSKQPHPSTSTRLPALTPHPTLGEKPTFRPNPSTKQEAIERHLVSSRTSNPK 118

Query: 67  LCQQQGTSIIRPSPSEYINSTSRSHSPPDDRTWHSN 86
              QQ  SII+ SPS+ INSTSRSHSPPD    HS+
Sbjct: 119 RHPQQSASIIQASPSKQINSTSRSHSPPDVGAQHSD 154

The following BLAST results are available for this feature:

BLAST of MELO3C006932.2 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_061496626.1	3.9e-08	46.88	hypothetical protein [Legionella pneumophila]	[more]

BLAST of MELO3C006932.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C006932.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006932.2 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006932.2.1	MELO3C006932.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..124

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006932.2	Cucumber (Gy14) v2	cgybmedB201
MELO3C006932.2	Cucumber (Gy14) v1	cgymedB142
MELO3C006932.2	Cucumber (Gy14) v1	cgymedB431
MELO3C006932.2	Cucumber (Gy14) v1	cgymedB496
MELO3C006932.2	Cucurbita maxima (Rimu)	cmamedB344
MELO3C006932.2	Cucurbita maxima (Rimu)	cmamedB432
MELO3C006932.2	Cucurbita maxima (Rimu)	cmamedB661
MELO3C006932.2	Cucurbita moschata (Rifu)	cmomedB331
MELO3C006932.2	Cucurbita moschata (Rifu)	cmomedB421
MELO3C006932.2	Cucurbita moschata (Rifu)	cmomedB649
MELO3C006932.2	Cucurbita moschata (Rifu)	cmomedB944
MELO3C006932.2	Cucurbita pepo (Zucchini)	cpemedB050
MELO3C006932.2	Cucurbita pepo (Zucchini)	cpemedB233
MELO3C006932.2	Cucurbita pepo (Zucchini)	cpemedB835
MELO3C006932.2	Wild cucumber (PI 183967)	cpimedB224
MELO3C006932.2	Wild cucumber (PI 183967)	cpimedB246
MELO3C006932.2	Cucumber (Chinese Long) v2	cumedB223
MELO3C006932.2	Cucumber (Chinese Long) v2	cumedB245
MELO3C006932.2	Melon (DHL92) v3.6.1	medmedB148
MELO3C006932.2	Watermelon (Charleston Gray)	medwcgB416
MELO3C006932.2	Watermelon (97103) v1	medwmB447
MELO3C006932.2	Silver-seed gourd	carmedB0722
MELO3C006932.2	Silver-seed gourd	carmedB0743
MELO3C006932.2	Silver-seed gourd	carmedB0975
MELO3C006932.2	Cucumber (Chinese Long) v3	cucmedB230
MELO3C006932.2	Cucumber (Chinese Long) v3	cucmedB253
MELO3C006932.2	Cucumber (Chinese Long) v3	cucmedB407
MELO3C006932.2	Watermelon (97103) v2	medwmbB423
MELO3C006932.2	Watermelon (97103) v2	medwmbB436
MELO3C006932.2	Wax gourd	medwgoB543