MELO3C006825 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006825
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranslation initiation factor IF-1
Locationchr6 : 6424462 .. 6424701 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAGCAAAAAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAACGATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCAACATAGTTTTATCCATATACTAGGTAATAGAGAGTAAAAAAATTCAGTAAGTTGTTACAATTCAATCAGGACCAAAAGGCGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

mRNA sequence

ATGAAAGAGCAAAAAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAACGATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCAACATAGTTTTATCCATATACTAGTAAGTTGTTACAATTCAATCAGGACCAAAAGGCGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

Coding sequence (CDS)

ATGAAAGAGCAAAAAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAACGATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCAACATAGTTTTATCCATATACTAGTAAGTTGTTACAATTCAATCAGGACCAAAAGGCGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

Protein sequence

MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVSCYNSIRTKRRIIYRLRNKDSND*
Homology
[Close]
BLAST of MELO3C006825 vs. Swiss-Prot
Match: IF1C_CUCSA (Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus GN=infA PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-30
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL----VSCYNSIRT 60
          MKEQKRISE LITESLTNDMFWVCL+NEDPILGYVSGRI+HSFIHIL    VSCY+S RT
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 KRRIIYRLRNKDSND 72
          +RRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]
BLAST of MELO3C006825 vs. Swiss-Prot
Match: IF1C_SPIOL (Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea GN=infA PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-19
Identity = 56/79 (70.89%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYN 60
          MKEQK I EGLITESL N MFWV LDNEDPILGYVSGRI+ S I IL        VS Y+
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRILPGDRVKIEVSRYD 60

Query: 61 SIRTKRRIIYRLRNKDSND 72
          S  T+ RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]
BLAST of MELO3C006825 vs. Swiss-Prot
Match: IF1C_NUPAD (Translation initiation factor IF-1, chloroplastic OS=Nuphar advena GN=infA PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-19
Identity = 55/79 (69.62%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYN 60
          MKEQK I EGLITESL N MFWV LDNED +LGYVSGRI+ SFI IL        VS Y+
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 SIRTKRRIIYRLRNKDSND 72
          S  T+ RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]
BLAST of MELO3C006825 vs. Swiss-Prot
Match: IF1C_CABCA (Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana GN=infA PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-19
Identity = 55/79 (69.62%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYN 60
          MKEQK I EGLITESL N MFWV LDNED +LGYVSGRI+ SFI IL        VS Y+
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 SIRTKRRIIYRLRNKDSND 72
          S  T+ RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]
BLAST of MELO3C006825 vs. Swiss-Prot
Match: IF1C_NYMAL (Translation initiation factor IF-1, chloroplastic OS=Nymphaea alba GN=infA PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-19
Identity = 55/79 (69.62%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYN 60
          MKEQK I EGLITESL N MFWV LDNED +LGYVSGRI+ SFI IL        VS Y+
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 SIRTKRRIIYRLRNKDSND 72
          S  T+ RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]
BLAST of MELO3C006825 vs. TrEMBL
Match: G3ETT2_CUCME (Translational initiation factor 1 OS=Cucumis melo subsp. melo GN=infA PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 6.4e-30
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL----VSCYNSIRT 60
          MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL    VSCY+S RT
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 KRRIIYRLRNKDSND 72
          +RRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]
BLAST of MELO3C006825 vs. TrEMBL
Match: X2F7S7_LAGSI (Translational initiation factor 1 (Fragment) OS=Lagenaria siceraria GN=infA PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.6e-18
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 1 

Query: 8  SEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL----VSCYNSIRTKRRII 62
          SEGLITESLTN MFWVCLDNEDPILGYVSGRI+HSFIHIL    VSCY+S RTK RII
Sbjct: 1  SEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILVKISVSCYDSTRTKGRII 58

[Close]
BLAST of MELO3C006825 vs. TrEMBL
Match: C4P3M5_SIMCH (Translation initiation factor IF-1, chloroplastic OS=Simmondsia chinensis GN=infA PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.6e-18
Identity = 57/79 (72.15%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYN 60
          MKEQK I EGLITESL N MFWV LDNED ILGYVSGRI+ SFI IL        VS Y+
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDLILGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 SIRTKRRIIYRLRNKDSND 72
          S  TK RIIYRLRNKDSND
Sbjct: 61 S--TKGRIIYRLRNKDSND 77

[Close]
BLAST of MELO3C006825 vs. TrEMBL
Match: M1KEY7_XIPCA (Translation initiation factor IF-1 OS=Xiphidium caeruleum GN=infA PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-17
Identity = 56/79 (70.89%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYN 60
          MKEQK I EGLITESL N MFWV LDNED ILGYVSGRI+ SFI IL        VS Y+
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLILGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 SIRTKRRIIYRLRNKDSND 72
          S  T+ RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]
BLAST of MELO3C006825 vs. TrEMBL
Match: A0A067YPV6_NYMME (Translation initiation factor IF-1, chloroplastic OS=Nymphaea mexicana GN=infA PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 55/79 (69.62%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYN 60
          MKEQK I EGLITESL N MFWV LDNED +LGYVSGRI+ SFI IL        VS Y+
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 SIRTKRRIIYRLRNKDSND 72
          S  T+ RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]
BLAST of MELO3C006825 vs. TAIR10
Match: AT4G11175.1 (AT4G11175.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 60.5 bits (145), Expect = 5.0e-10
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1 

Query: 5   KRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYNSIRT 64
           K + EGL+TESL N MF V L+N D ILGY+ G+I+ +FI IL        +S Y+S  T
Sbjct: 72  KTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEMSVYDS--T 131

Query: 65  KRRIIYRLRNKD 69
           K RII+R+ ++D
Sbjct: 132 KGRIIFRMSSRD 141

[Close]
BLAST of MELO3C006825 vs. NCBI nr
Match: gi|346578226|ref|YP_004841818.1| (translational initiation factor 1 [Cucumis melo subsp. melo])

HSP 1 Score: 137.5 bits (345), Expect = 9.2e-30
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL----VSCYNSIRT 60
          MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL    VSCY+S RT
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 KRRIIYRLRNKDSND 72
          +RRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]
BLAST of MELO3C006825 vs. NCBI nr
Match: gi|156630932|sp|A5J1W9.1|IF1C_CUCSA (RecName: Full=Translation initiation factor IF-1, chloroplastic)

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-28
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL----VSCYNSIRT 60
          MKEQKRISE LITESLTNDMFWVCL+NEDPILGYVSGRI+HSFIHIL    VSCY+S RT
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 KRRIIYRLRNKDSND 72
          +RRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]
BLAST of MELO3C006825 vs. NCBI nr
Match: gi|595645256|gb|AHM88719.1| (translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 97.8 bits (242), Expect = 8.1e-18
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 1 

Query: 8  SEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL----VSCYNSIRTKRRII 62
          SEGLITESLTN MFWVCLDNEDPILGYVSGRI+HSFIHIL    VSCY+S RTK RII
Sbjct: 1  SEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILVKISVSCYDSTRTKGRII 58

[Close]
BLAST of MELO3C006825 vs. NCBI nr
Match: gi|237861975|gb|ACR24641.1| (initiation factor IF1 (chloroplast) [Simmondsia chinensis])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 57/79 (72.15%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYN 60
          MKEQK I EGLITESL N MFWV LDNED ILGYVSGRI+ SFI IL        VS Y+
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDLILGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 SIRTKRRIIYRLRNKDSND 72
          S  TK RIIYRLRNKDSND
Sbjct: 61 S--TKGRIIYRLRNKDSND 77

[Close]
BLAST of MELO3C006825 vs. NCBI nr
Match: gi|126022794|ref|NP_054969.2| (translation initiation factor 1 [Spinacia oleracea])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 56/79 (70.89%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL--------VSCYN 60
          MKEQK I EGLITESL N MFWV LDNEDPILGYVSGRI+ S I IL        VS Y+
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRILPGDRVKIEVSRYD 60

Query: 61 SIRTKRRIIYRLRNKDSND 72
          S  T+ RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

The following BLAST results are available for this feature:
BLAST of MELO3C006825 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF1C_CUCSA2.4e-3086.67Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus GN=infA PE=... [more]
IF1C_SPIOL1.1e-1970.89Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea GN=infA P... [more]
IF1C_NUPAD1.9e-1969.62Translation initiation factor IF-1, chloroplastic OS=Nuphar advena GN=infA PE=3 ... [more]
IF1C_CABCA1.9e-1969.62Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana GN=infA... [more]
IF1C_NYMAL1.9e-1969.62Translation initiation factor IF-1, chloroplastic OS=Nymphaea alba GN=infA PE=3 ... [more]
BLAST of MELO3C006825 vs. TrEMBL
Match NameE-valueIdentityDescription
G3ETT2_CUCME6.4e-3090.67Translational initiation factor 1 OS=Cucumis melo subsp. melo GN=infA PE=4 SV=1[more]
X2F7S7_LAGSI5.6e-1884.48Translational initiation factor 1 (Fragment) OS=Lagenaria siceraria GN=infA PE=4... [more]
C4P3M5_SIMCH9.6e-1872.15Translation initiation factor IF-1, chloroplastic OS=Simmondsia chinensis GN=inf... [more]
M1KEY7_XIPCA1.6e-1770.89Translation initiation factor IF-1 OS=Xiphidium caeruleum GN=infA PE=3 SV=1[more]
A0A067YPV6_NYMME2.1e-1769.62Translation initiation factor IF-1, chloroplastic OS=Nymphaea mexicana GN=infA P... [more]
BLAST of MELO3C006825 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G11175.15.0e-1048.61 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of MELO3C006825 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|346578226|ref|YP_004841818.1|9.2e-3090.67translational initiation factor 1 [Cucumis melo subsp. melo][more]
gi|156630932|sp|A5J1W9.1|IF1C_CUCSA3.9e-2886.67RecName: Full=Translation initiation factor IF-1, chloroplastic[more]
gi|595645256|gb|AHM88719.1|8.1e-1884.48translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria][more]
gi|237861975|gb|ACR24641.1|1.4e-1772.15initiation factor IF1 (chloroplast) [Simmondsia chinensis][more]
gi|126022794|ref|NP_054969.2|1.8e-1770.89translation initiation factor 1 [Spinacia oleracea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006825T1MELO3C006825T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 2..49
score: 7.6
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 2..63
score: 9.43
NoneNo IPR availablePANTHERPTHR33370FAMILY NOT NAMEDcoord: 2..70
score: 1.2
NoneNo IPR availablePANTHERPTHR33370:SF1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 2..70
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006825Wax gourdmewgoB529
MELO3C006825Melon (DHL92) v3.5.1memeB015
MELO3C006825Cucumber (Gy14) v1cgymeB439
MELO3C006825Cucumber (Gy14) v1cgymeB497
MELO3C006825Cucurbita maxima (Rimu)cmameB278
MELO3C006825Cucurbita maxima (Rimu)cmameB296
MELO3C006825Cucurbita maxima (Rimu)cmameB579
MELO3C006825Cucurbita maxima (Rimu)cmameB582
MELO3C006825Cucurbita maxima (Rimu)cmameB692
MELO3C006825Cucurbita maxima (Rimu)cmameB853
MELO3C006825Cucurbita moschata (Rifu)cmomeB269
MELO3C006825Cucurbita moschata (Rifu)cmomeB289
MELO3C006825Cucurbita moschata (Rifu)cmomeB567
MELO3C006825Cucurbita moschata (Rifu)cmomeB570
MELO3C006825Cucurbita moschata (Rifu)cmomeB685
MELO3C006825Cucurbita moschata (Rifu)cmomeB835
MELO3C006825Wild cucumber (PI 183967)cpimeB230
MELO3C006825Wild cucumber (PI 183967)cpimeB400
MELO3C006825Wild cucumber (PI 183967)cpimeB403
MELO3C006825Cucumber (Chinese Long) v2cumeB236
MELO3C006825Cucumber (Chinese Long) v2cumeB405
MELO3C006825Watermelon (Charleston Gray)mewcgB422
MELO3C006825Watermelon (Charleston Gray)mewcgB427
MELO3C006825Watermelon (97103) v1mewmB461
MELO3C006825Watermelon (97103) v1mewmB481
MELO3C006825Cucurbita pepo (Zucchini)cpemeB177
MELO3C006825Cucurbita pepo (Zucchini)cpemeB190
MELO3C006825Cucurbita pepo (Zucchini)cpemeB414
MELO3C006825Cucurbita pepo (Zucchini)cpemeB697
MELO3C006825Cucurbita pepo (Zucchini)cpemeB701
MELO3C006825Bottle gourd (USVL1VR-Ls)lsimeB036
MELO3C006825Bottle gourd (USVL1VR-Ls)lsimeB379
MELO3C006825Cucumber (Gy14) v2cgybmeB200
MELO3C006825Cucumber (Gy14) v2cgybmeB350
MELO3C006825Cucumber (Gy14) v2cgybmeB353
MELO3C006825Silver-seed gourdcarmeB0381
MELO3C006825Silver-seed gourdcarmeB0859
MELO3C006825Silver-seed gourdcarmeB0911
MELO3C006825Cucumber (Chinese Long) v3cucmeB236
MELO3C006825Cucumber (Chinese Long) v3cucmeB414
MELO3C006825Cucumber (Chinese Long) v3cucmeB415
MELO3C006825Watermelon (97103) v2mewmbB424
MELO3C006825Watermelon (97103) v2mewmbB434